# SpatialData-DB datasets, shard eb

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-breast-wraoxirj7af1czhx0000"></a>
## Human breast

- uid: `wRaoXIRJ7aF1cZhX0000`
- Page: /datasets/visium-spatial-gene-expression-breast-wraoxirj7af1czhx0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 1,376
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210616
- Publication: https://doi.org/10.1158/0008-5472.CAN-22-2682
- Collections: [geo-gse210616](/collections/md/8.md#geo-gse210616)
- Load: `Catalog().dataset("wRaoXIRJ7aF1cZhX0000").to_sdata()`


<a id="10x-xenium-brain-xlnawdtjensscfch0000"></a>
## Mouse brain

- uid: `XlNAWdtjenSSCFCH0000`
- Page: /datasets/10x-xenium-brain-xlnawdtjensscfch0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 111,183
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8253805
- Publication: https://doi.org/10.1016/j.celrep.2024.115194
- Collections: [geo-gse266689](/collections/md/6.md#geo-gse266689)
- Load: `Catalog().dataset("XlNAWdtjenSSCFCH0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-5jaolmlyxp3za90n0000"></a>
## Human breast

- uid: `5jAOlMlYxP3zA90N0000`
- Page: /datasets/visium-spatial-gene-expression-breast-5jaolmlyxp3za90n0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 1,564
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE213688
- Publication: https://doi.org/10.1016/j.labinv.2023.100258
- Collections: [geo-gse213688](/collections/md/5.md#geo-gse213688)
- Load: `Catalog().dataset("5jAOlMlYxP3zA90N0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-m2hteulwlt4zxhek0000"></a>
## Human liver

- uid: `m2hTEulwlT4ZXHEK0000`
- Page: /datasets/visium-spatial-gene-expression-liver-m2hteulwlt4zxhek0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 1,987
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245908
- Publication: https://doi.org/10.1016/j.celrep.2024.113773
- Collections: [geo-gse245908](/collections/md/f.md#geo-gse245908)
- Load: `Catalog().dataset("m2hTEulwlT4ZXHEK0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-8vlh13yl5w6dz5ez0000"></a>
## Human kidney

- uid: `8vLh13yl5w6dZ5EZ0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-8vlh13yl5w6dz5ez0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: pauci-immune glomerulonephritis with ANCA
- Modality: RNA
- Observations (spots): 624
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250138
- Publication: https://doi.org/10.1038/s41467-024-52525-w
- Collections: [geo-gse250138](/collections/md/e.md#geo-gse250138)
- Load: `Catalog().dataset("8vLh13yl5w6dZ5EZ0000").to_sdata()`


<a id="10x-xenium-pancreas-ufioalxhktlsi5fo0000"></a>
## Human pancreas

- uid: `UFIoalxHktLSI5fo0000`
- Page: /datasets/10x-xenium-pancreas-ufioalxhktlsi5fo0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic adenocarcinoma
- Modality: RNA
- Observations (cells): 238,408
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9372005
- Publication: https://doi.org/10.1038/s41467-026-68976-2
- Collections: [geo-gse313662](/collections/md/2.md#geo-gse313662)
- Load: `Catalog().dataset("UFIoalxHktLSI5fo0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-i744eybnorinl2q40001"></a>
## Human dorsolateral prefrontal cortex

- uid: `i744eYbnOriNl2q40001`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-i744eybnorinl2q40001/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: major depressive disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("i744eYbnOriNl2q40001").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-b9mjkywpfjxocbiy0000"></a>
## Human pancreas

- uid: `B9MJKyWPfjxoCBIy0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-b9mjkywpfjxocbiy0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,567
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669
- Publication: https://doi.org/10.1172/jci.insight.191595
- Collections: [geo-gse294669](/collections/md/e.md#geo-gse294669)
- Load: `Catalog().dataset("B9MJKyWPfjxoCBIy0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-h0ojj7ib0vwrs4pm0000"></a>
## Mouse heart

- uid: `h0ojj7Ib0vwRS4pm0000`
- Page: /datasets/visium-spatial-gene-expression-heart-h0ojj7ib0vwrs4pm0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Modality: RNA
- Observations (spots): 3,406
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("h0ojj7Ib0vwRS4pm0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-wlqb4wjx1cnj2ggs0000"></a>
## Human lung

- uid: `WLqB4WJx1cnj2ggs0000`
- Page: /datasets/visium-spatial-gene-expression-lung-wlqb4wjx1cnj2ggs0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: COVID-19
- Modality: RNA
- Observations (spots): 4,768
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE271370
- Collections: [geo-gse271370](/collections/md/5.md#geo-gse271370)
- Load: `Catalog().dataset("WLqB4WJx1cnj2ggs0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-nis6phoukpogimuh0000"></a>
## Mouse lung

- uid: `nIs6pHoUKpoGImUh0000`
- Page: /datasets/visium-spatial-gene-expression-lung-nis6phoukpogimuh0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: lung cancer
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295967
- Collections: [geo-gse295967](/collections/md/1.md#geo-gse295967)
- Load: `Catalog().dataset("nIs6pHoUKpoGImUh0000").to_sdata()`


<a id="10x-xenium-brain-dckbcbzz0ar5ycrk0000"></a>
## Human brain

- uid: `DcKbCBZz0AR5YCRk0000`
- Page: /datasets/10x-xenium-brain-dckbcbzz0ar5ycrk0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: atypical teratoid rhabdoid tumor
- Modality: RNA
- Observations (cells): 126,189
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283843
- Publication: https://doi.org/10.1093/neuonc/noaf179
- Load: `Catalog().dataset("DcKbCBZz0AR5YCRk0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-bs6nmwhjgwnepdqz0000"></a>
## Human lung

- uid: `BS6nMWHJGwNepDqz0000`
- Page: /datasets/visium-spatial-gene-expression-lung-bs6nmwhjgwnepdqz0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: COVID-19
- Modality: RNA
- Observations (spots): 3,643
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE271370
- Collections: [geo-gse271370](/collections/md/5.md#geo-gse271370)
- Load: `Catalog().dataset("BS6nMWHJGwNepDqz0000").to_sdata()`


<a id="visium-spatial-gene-expression-unknown-5znfrpquolyicrpm0000"></a>
## Human unknown

- uid: `5ZNFRpquOLYicRPM0000`
- Page: /datasets/visium-spatial-gene-expression-unknown-5znfrpquolyicrpm0000/
- Technology: Visium
- Organism: human
- Tissue: unknown
- Condition: diffuse large B-cell lymphoma
- Modality: RNA
- Observations (spots): 3,225
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9980514
- Collections: [geo-gse344506](/collections/md/1.md#geo-gse344506)
- Load: `Catalog().dataset("5ZNFRpquOLYicRPM0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-ehy6ce9swgfz0kc50000"></a>
## Mouse kidney

- uid: `eHY6Ce9SwGfZ0Kc50000`
- Page: /datasets/visium-spatial-gene-expression-kidney-ehy6ce9swgfz0kc50000/
- Technology: Visium
- Organism: mouse
- Tissue: kidney
- Condition: acute kidney failure
- Modality: RNA
- Observations (spots): 3,393
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8323122
- Collections: [geo-gse269622](/collections/md/f.md#geo-gse269622)
- Load: `Catalog().dataset("eHY6Ce9SwGfZ0Kc50000").to_sdata()`


<a id="10x-xenium-skin-of-body-26fo6idsilpxq0mx0000"></a>
## Human skin of body

- uid: `26Fo6iDsILpxQ0MX0000`
- Page: /datasets/10x-xenium-skin-of-body-26fo6idsilpxq0mx0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous neuroendocrine carcinoma
- Modality: RNA
- Observations (cells): 51,539
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326660
- Publication: https://doi.org/10.1126/scitranslmed.aea8773
- Collections: [geo-gse326660](/collections/md/a.md#geo-gse326660)
- Load: `Catalog().dataset("26Fo6iDsILpxQ0MX0000").to_sdata()`


<a id="visium-spatial-gene-expression-mesenteric-artery-jecz0wmr6qpuproj0000"></a>
## Human mesenteric artery

- uid: `jECz0WMr6QPUprOJ0000`
- Page: /datasets/visium-spatial-gene-expression-mesenteric-artery-jecz0wmr6qpuproj0000/
- Technology: Visium
- Organism: human
- Tissue: mesenteric artery
- Modality: RNA
- Observations (spots): 711
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE293427
- Publication: https://doi.org/10.1126/scitranslmed.adu3761
- Collections: [geo-gse293427](/collections/md/7.md#geo-gse293427)
- Load: `Catalog().dataset("jECz0WMr6QPUprOJ0000").to_sdata()`


<a id="10x-xenium-skin-of-back-cz1ctokidcxou1y40000"></a>
## Mouse skin of back

- uid: `CZ1cTOkiDCxOU1y40000`
- Page: /datasets/10x-xenium-skin-of-back-cz1ctokidcxou1y40000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: skin of back
- Modality: RNA
- Observations (cells): 182,402
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE280069
- Publication: https://doi.org/10.1172/jci.insight.182844
- Collections: [geo-gse280069](/collections/md/6.md#geo-gse280069)
- Load: `Catalog().dataset("CZ1cTOkiDCxOU1y40000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-km7y8x7yvf6rznuv0000"></a>
## Human skin of body

- uid: `Km7Y8x7YVF6rzNuV0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-km7y8x7yvf6rznuv0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: systemic sclerosis
- Modality: RNA
- Observations (spots): 907
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7932818
- Collections: [geo-gse249279](/collections/md/3.md#geo-gse249279)
- Load: `Catalog().dataset("Km7Y8x7YVF6rzNuV0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-8pwctjnxxi3lioyn0000"></a>
## Mouse brain

- uid: `8pWCtjnxxI3lIoyn0000`
- Page: /datasets/visium-spatial-gene-expression-brain-8pwctjnxxi3lioyn0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE243140
- Collections: [geo-gse243140](/collections/md/5.md#geo-gse243140)
- Load: `Catalog().dataset("8pWCtjnxxI3lIoyn0000").to_sdata()`


<a id="10x-xenium-ovary-9gj73j25dg5hbi4d0001"></a>
## Human ovary

- uid: `9gj73j25dg5HbI4d0001`
- Page: /datasets/10x-xenium-ovary-9gj73j25dg5hbi4d0001/
- Technology: 10x Xenium
- Organism: human
- Tissue: ovary
- Condition: ovarian cancer
- Modality: RNA
- Observations (cells): 200,900
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/xenium-comparison-fresh-frozen-human-ovarian-cancer
- Collections: [10x-xenium-comparison-fresh-frozen-human-ovarian-cancer](/collections/md/5.md#10x-xenium-comparison-fresh-frozen-human-ovarian-cancer)
- Load: `Catalog().dataset("9gj73j25dg5HbI4d0001").to_sdata()`


<a id="visium-spatial-gene-expression-ectocervix-elupqkcgw7xiwiub0000"></a>
## Human ectocervix

- uid: `ELUPqkcgW7XiWiub0000`
- Page: /datasets/visium-spatial-gene-expression-ectocervix-elupqkcgw7xiwiub0000/
- Technology: Visium
- Organism: human
- Tissue: ectocervix
- Modality: RNA
- Observations (spots): 1,005
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9053849
- Collections: [geo-gse300112](/collections/md/2.md#geo-gse300112)
- Load: `Catalog().dataset("ELUPqkcgW7XiWiub0000").to_sdata()`


<a id="merfish-brain-otjums7ahumqeeha0000"></a>
## Mouse brain

- uid: `OtJuMS7aHUMqEEha0000`
- Page: /datasets/merfish-brain-otjums7ahumqeeha0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 26,395
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("OtJuMS7aHUMqEEha0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-0em9ghp0oulkunw90000"></a>
## Mouse kidney

- uid: `0EM9ghp0OULKuNW90000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-0em9ghp0oulkunw90000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: kidney
- Modality: Metabolomics
- Observations: 12,125
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-07-23_23h36m29s
- Load: `Catalog().dataset("0EM9ghp0OULKuNW90000").to_sdata()`


<a id="vizgen-merscope-brain-vvkwgmv3javejmwo0000"></a>
## Mouse brain

- uid: `VVKWgmv3JAvEJmWO0000`
- Page: /datasets/vizgen-merscope-brain-vvkwgmv3javejmwo0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 98,539
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("VVKWgmv3JAvEJmWO0000").to_sdata()`


<a id="mibi-tof-brain-251aodb4oqi8d1vc0000"></a>
## Human brain

- uid: `251aOdb4OQI8d1Vc0000`
- Page: /datasets/mibi-tof-brain-251aodb4oqi8d1vc0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: brain
- Condition: glioma
- Modality: protein
- Observations: 1,280
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1579
- Collections: [bia-s-biad1579](/collections/md/2.md#bia-s-biad1579)
- Load: `Catalog().dataset("251aOdb4OQI8d1Vc0000").to_sdata()`


<a id="vizgen-merscope-brain-0hju6ziazncwzg0s0000"></a>
## Mouse brain

- uid: `0HJu6ZiAzNCwzg0s0000`
- Page: /datasets/vizgen-merscope-brain-0hju6ziazncwzg0s0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 277,689
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269617
- Load: `Catalog().dataset("0HJu6ZiAzNCwzg0s0000").to_sdata()`


<a id="10x-xenium-bone-marrow-n222wctadace6kxz0000"></a>
## Human bone marrow

- uid: `N222WctAdaCe6kxz0000`
- Page: /datasets/10x-xenium-bone-marrow-n222wctadace6kxz0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: bone marrow
- Condition: monoclonal gammopathy of uncertain significance
- Modality: RNA
- Observations (cells): 162,109
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299207
- Publication: https://doi.org/10.1182/blood.2025028896
- Load: `Catalog().dataset("N222WctAdaCe6kxz0000").to_sdata()`


<a id="10x-xenium-dorsolateral-prefrontal-cortex-oe8ytrsioeqbgv6n0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `OE8YtRSIoeqBgV6n0000`
- Page: /datasets/10x-xenium-dorsolateral-prefrontal-cortex-oe8ytrsioeqbgv6n0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (cells): 53,201
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307404
- Load: `Catalog().dataset("OE8YtRSIoeqBgV6n0000").to_sdata()`


<a id="10x-xenium-heart-3bbawygsasgsxjli0000"></a>
## Human heart

- uid: `3bbaWyGSASGsXJlI0000`
- Page: /datasets/10x-xenium-heart-3bbawygsasgsxjli0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: heart
- Condition: cardiac sarcoidosis
- Modality: RNA
- Observations (cells): 162,196
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319771
- Publication: https://doi.org/10.1161/CIRCULATIONAHA.126.079304
- Load: `Catalog().dataset("3bbaWyGSASGsXJlI0000").to_sdata()`