# SpatialData-DB datasets, shard e5

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-colon-9nf1a8zepcev4tfo0000"></a>
## Rat colon

- uid: `9NF1A8ZePCev4tfo0000`
- Page: /datasets/visium-spatial-gene-expression-colon-9nf1a8zepcev4tfo0000/
- Technology: Visium
- Organism: rat
- Tissue: colon
- Condition: adenocarcinoma
- Modality: RNA
- Observations (spots): 1,428
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211895
- Publication: https://doi.org/10.1016/j.crmeth.2022.100340
- Collections: [geo-gse211895](/collections/md/d.md#geo-gse211895)
- Load: `Catalog().dataset("9NF1A8ZePCev4tfo0000").to_sdata()`


<a id="visium-spatial-gene-expression-head-of-femur-6qsv3u7rqnbjyiar0000"></a>
## Human head of femur

- uid: `6Qsv3u7rqNbjyIAr0000`
- Page: /datasets/visium-spatial-gene-expression-head-of-femur-6qsv3u7rqnbjyiar0000/
- Technology: Visium
- Organism: human
- Tissue: head of femur
- Condition: osteoarthritis
- Modality: RNA
- Observations (spots): 14,400
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342703
- Collections: [geo-gse342703](/collections/md/3.md#geo-gse342703)
- Load: `Catalog().dataset("6Qsv3u7rqNbjyIAr0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-vzl6d5uoogwadafz0000"></a>
## Human liver

- uid: `VZl6d5uoogwaDAFz0000`
- Page: /datasets/visium-spatial-gene-expression-liver-vzl6d5uoogwadafz0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 2,848
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE268427
- Publication: https://doi.org/10.1038/s42003-024-07043-2
- Collections: [geo-gse268427](/collections/md/c.md#geo-gse268427)
- Load: `Catalog().dataset("VZl6d5uoogwaDAFz0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-u1iooaxk1wznspod0000"></a>
## Mouse brain

- uid: `u1iooaxK1wznSPOd0000`
- Page: /datasets/visium-spatial-gene-expression-brain-u1iooaxk1wznspod0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,002
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41587-023-01937-y
- Publication: https://doi.org/10.1038/s41587-023-01937-y
- Collections: [doi-10-1038-s41587-023-01937-y](/collections/md/b.md#doi-10-1038-s41587-023-01937-y)
- Load: `Catalog().dataset("u1iooaxK1wznSPOd0000").to_sdata()`


<a id="visium-hd-bone-element-bzknjoca9mr3ci030000"></a>
## Human bone element

- uid: `BzKNJocA9Mr3Ci030000`
- Page: /datasets/visium-hd-bone-element-bzknjoca9mr3ci030000/
- Technology: Visium HD
- Organism: human
- Tissue: bone element
- Condition: Ewing sarcoma
- Modality: RNA
- Observations (bins): 46,513
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9556001
- Publication: https://doi.org/10.1038/s41591-026-04340-7
- Collections: [geo-gse322640](/collections/md/a.md#geo-gse322640)
- Load: `Catalog().dataset("BzKNJocA9Mr3Ci030000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-spsg8maxlblz0yoi0000"></a>
## Human basal ganglion

- uid: `spsg8maXlBLZ0Yoi0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-spsg8maxlblz0yoi0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 78,174
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("spsg8maXlBLZ0Yoi0000").to_sdata()`


<a id="visium-spatial-gene-expression-saphenous-vein-fjub19s57c49cizn0000"></a>
## Human saphenous vein

- uid: `FJub19S57c49cIZN0000`
- Page: /datasets/visium-spatial-gene-expression-saphenous-vein-fjub19s57c49cizn0000/
- Technology: Visium
- Organism: human
- Tissue: saphenous vein
- Modality: RNA
- Observations (spots): 4,965
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310351
- Publication: https://doi.org/10.1152/ajpheart.00653.2025
- Collections: [geo-gse310351](/collections/md/a.md#geo-gse310351)
- Load: `Catalog().dataset("FJub19S57c49cIZN0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-aocdk6zrtlt3pb5g0000"></a>
## Human brain

- uid: `aoCDk6ZRtLt3Pb5G0000`
- Page: /datasets/visium-spatial-gene-expression-brain-aocdk6zrtlt3pb5g0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 2,499
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235672
- Publication: https://doi.org/10.1038/s43018-023-00598-9
- Collections: [geo-gse235672](/collections/md/b.md#geo-gse235672)
- Load: `Catalog().dataset("aoCDk6ZRtLt3Pb5G0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-kfiu82eyghqtz58t0000"></a>
## Human skin of body

- uid: `kFiU82EYgHQtz58T0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-kfiu82eyghqtz58t0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous melanoma
- Modality: RNA
- Observations (spots): 14,210
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298774
- Publication: https://doi.org/10.1158/0008-5472.CAN-25-2934
- Collections: [geo-gse298774](/collections/md/2.md#geo-gse298774)
- Load: `Catalog().dataset("kFiU82EYgHQtz58T0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-dnmjzh19on2hg1sl0000"></a>
## Mouse brain

- uid: `dnmjZh19oN2hG1sL0000`
- Page: /datasets/visium-spatial-gene-expression-brain-dnmjzh19on2hg1sl0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 1,660
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("dnmjZh19oN2hG1sL0000").to_sdata()`


<a id="mibi-tof-lung-k0qqpzhitq0i2py40000"></a>
## Human lung

- uid: `K0qqPZHItq0I2pY40000`
- Page: /datasets/mibi-tof-lung-k0qqpzhitq0i2py40000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lung
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 298
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("K0qqPZHItq0I2pY40000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-xs7tw92zqag99irp0000"></a>
## Mouse heart

- uid: `xS7tw92zqAg99iRP0000`
- Page: /datasets/visium-spatial-gene-expression-heart-xs7tw92zqag99irp0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Modality: RNA
- Observations (spots): 1,374
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5691527
- Collections: [geo-gse188888](/collections/md/7.md#geo-gse188888)
- Load: `Catalog().dataset("xS7tw92zqAg99iRP0000").to_sdata()`


<a id="10x-xenium-ascending-aorta-tqbmzjoaligqwsmn0000"></a>
## Human ascending aorta

- uid: `TqBMZjoaLIGQwSMN0000`
- Page: /datasets/10x-xenium-ascending-aorta-tqbmzjoaligqwsmn0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: ascending aorta
- Condition: temporal arteritis
- Modality: RNA
- Observations (cells): 45,520
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306150
- Publication: https://doi.org/10.1172/jci.insight.200255
- Collections: [geo-gse306150](/collections/md/6.md#geo-gse306150)
- Load: `Catalog().dataset("TqBMZjoaLIGQwSMN0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-pmsss6prqdbwhd3c0000"></a>
## Human lung

- uid: `pMSSS6prqdBwHd3C0000`
- Page: /datasets/visium-spatial-gene-expression-lung-pmsss6prqdbwhd3c0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,623
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8452858
- Collections: [geo-gse274557](/collections/md/1.md#geo-gse274557)
- Load: `Catalog().dataset("pMSSS6prqdBwHd3C0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-wcv1aqwqeizyzipw0000"></a>
## Mouse brain

- uid: `wCv1aQWqeIzYziPW0000`
- Page: /datasets/visium-spatial-gene-expression-brain-wcv1aqwqeizyzipw0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,083
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("wCv1aQWqeIzYziPW0000").to_sdata()`


<a id="merfish-brain-p7v2mueinqzci2qi0000"></a>
## Mouse brain

- uid: `P7V2MUEInQZcI2qi0000`
- Page: /datasets/merfish-brain-p7v2mueinqzci2qi0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 18,874
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("P7V2MUEInQZcI2qi0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-ymowmxqsuhmvpkxc0000"></a>
## Macaque basal ganglion

- uid: `yMowMXqSUHMVpkXC0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-ymowmxqsuhmvpkxc0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 62,660
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("yMowMXqSUHMVpkXC0000").to_sdata()`


<a id="10x-xenium-kidney-z4ctoynfig0qqjdz0000"></a>
## Human kidney

- uid: `z4ctOYNfig0qQJdZ0000`
- Page: /datasets/10x-xenium-kidney-z4ctoynfig0qqjdz0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Modality: RNA
- Observations (cells): 11,229
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302264
- Load: `Catalog().dataset("z4ctOYNfig0qQJdZ0000").to_sdata()`


<a id="10x-xenium-kidney-w1bzvhwcfhpd4pid0000"></a>
## Human kidney

- uid: `W1bZvhwcfHpd4PID0000`
- Page: /datasets/10x-xenium-kidney-w1bzvhwcfhpd4pid0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Condition: IgA glomerulonephritis
- Modality: RNA
- Observations (cells): 30,802
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE264334
- Publication: https://doi.org/10.1038/s41586-024-07563-1
- Load: `Catalog().dataset("W1bZvhwcfHpd4PID0000").to_sdata()`


<a id="merfish-brain-lfmdyagxjwb67dbz0000"></a>
## Mouse brain

- uid: `LfMdYAGXJwB67DBZ0000`
- Page: /datasets/merfish-brain-lfmdyagxjwb67dbz0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 8,829
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("LfMdYAGXJwB67DBZ0000").to_sdata()`


<a id="vizgen-merscope-brain-w9b1axhz7yywqojy0000"></a>
## Mouse brain

- uid: `w9B1aXHZ7yyWQOJY0000`
- Page: /datasets/vizgen-merscope-brain-w9b1axhz7yywqojy0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 99,681
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("w9B1aXHZ7yyWQOJY0000").to_sdata()`


<a id="mibi-tof-breast-axh6sthxzk8dg6hf0000"></a>
## Human breast

- uid: `axH6SthxzK8Dg6hF0000`
- Page: /datasets/mibi-tof-breast-axh6sthxzk8dg6hf0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,192
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("axH6SthxzK8Dg6hF0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-baxfusapijtuy30x0000"></a>
## Human kidney

- uid: `BAXfUsApIjtUy30x0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-baxfusapijtuy30x0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 9,072
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-03-15_20h47m52s
- Load: `Catalog().dataset("BAXfUsApIjtUy30x0000").to_sdata()`


<a id="mibi-tof-breast-fijpxegbzfaw4eq60000"></a>
## Human breast

- uid: `fIjPXeGbZfAw4EQ60000`
- Page: /datasets/mibi-tof-breast-fijpxegbzfaw4eq60000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,906
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("fIjPXeGbZfAw4EQ60000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-lung-wgytpbdfe8avcwht0000"></a>
## Human lung

- uid: `WGYtpBdFe8avCwht0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-lung-wgytpbdfe8avcwht0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: lung
- Modality: Metabolomics
- Observations: 27,846
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2024-02-21_07h50m59s
- Load: `Catalog().dataset("WGYtpBdFe8avCwht0000").to_sdata()`