# SpatialData-DB datasets, shard df

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-ovary-2j5hraf9rr69dazj0000"></a>
## Human ovary

- uid: `2J5hRAf9Rr69DAZj0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-2j5hraf9rr69dazj0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian cancer
- Modality: RNA
- Observations (spots): 4,674
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/human-ovarian-cancer-11-mm-capture-area-ffpe-2-standard
- Load: `Catalog().dataset("2J5hRAf9Rr69DAZj0000").to_sdata()`


<a id="visium-hd-lymph-node-magbfufx70u7nxkk0000"></a>
## Human lymph node

- uid: `MagBfufx70u7nxkK0000`
- Page: /datasets/visium-hd-lymph-node-magbfufx70u7nxkk0000/
- Technology: Visium HD
- Organism: human
- Tissue: lymph node
- Modality: RNA
- Observations (bins): 351,076
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-libraries-human-lymph-node-v4
- Load: `Catalog().dataset("MagBfufx70u7nxkK0000").to_sdata()`


<a id="visium-spatial-gene-expression-temporal-cortex-27etuxcdoxmyo1xm0000"></a>
## Human temporal cortex

- uid: `27etuxcDOXMyO1xM0000`
- Page: /datasets/visium-spatial-gene-expression-temporal-cortex-27etuxcdoxmyo1xm0000/
- Technology: Visium
- Organism: human
- Tissue: temporal cortex
- Modality: RNA
- Observations (spots): 12,985
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE293896
- Publication: https://doi.org/10.1007/s00401-026-02981-z
- Collections: [geo-gse293896](/collections/md/f.md#geo-gse293896)
- Load: `Catalog().dataset("27etuxcDOXMyO1xM0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-r8njqlocvnihgrz50000"></a>
## Mouse spinal cord

- uid: `R8NJQloCVnIhGRZ50000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-r8njqlocvnihgrz50000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 303
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("R8NJQloCVnIhGRZ50000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-2e1u9uzou6du7paa0000"></a>
## Human prostate gland

- uid: `2E1u9UZOu6du7PAa0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-2e1u9uzou6du7paa0000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostatic acinar adenocarcinoma
- Modality: RNA
- Observations (spots): 3,856
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-022-05023-2
- Publication: https://doi.org/10.1038/s41586-022-05023-2
- Collections: [doi-10-1038-s41586-022-05023-2](/collections/md/5.md#doi-10-1038-s41586-022-05023-2)
- Load: `Catalog().dataset("2E1u9UZOu6du7PAa0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-4gcjpnqqplwip7et0000"></a>
## Human brain

- uid: `4GCjpNqQpLWiP7et0000`
- Page: /datasets/visium-spatial-gene-expression-brain-4gcjpnqqplwip7et0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: brain glioma
- Modality: RNA
- Observations (spots): 2,028
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242352
- Publication: https://doi.org/10.1038/s41467-025-59805-z
- Collections: [geo-gse242352](/collections/md/d.md#geo-gse242352)
- Load: `Catalog().dataset("4GCjpNqQpLWiP7et0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-uentkiphjr5extbu0000"></a>
## Mouse liver

- uid: `uENTkIpHjr5exTbU0000`
- Page: /datasets/visium-spatial-gene-expression-liver-uentkiphjr5extbu0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: malaria
- Modality: RNA
- Observations (spots): 2,999
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE268068
- Publication: https://doi.org/10.1038/s41467-024-51418-2
- Collections: [geo-gse268068](/collections/md/b.md#geo-gse268068)
- Load: `Catalog().dataset("uENTkIpHjr5exTbU0000").to_sdata()`


<a id="visium-spatial-gene-expression-mammary-gland-gur4lldnnpfm5c6e0000"></a>
## Rat mammary gland

- uid: `GuR4lldNNpFm5C6e0000`
- Page: /datasets/visium-spatial-gene-expression-mammary-gland-gur4lldnnpfm5c6e0000/
- Technology: Visium
- Organism: rat
- Tissue: mammary gland
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 1,648
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253585
- Publication: https://doi.org/10.1016/j.ccell.2026.03.015
- Collections: [geo-gse253585](/collections/md/8.md#geo-gse253585)
- Load: `Catalog().dataset("GuR4lldNNpFm5C6e0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-tpp0rkjbcjvol6he0000"></a>
## Mouse lung

- uid: `tpp0RkjBcjvol6HE0000`
- Page: /datasets/visium-spatial-gene-expression-lung-tpp0rkjbcjvol6he0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: lung adenocarcinoma
- Modality: RNA
- Observations (spots): 3,693
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202159
- Publication: https://doi.org/10.1038/s41590-023-01504-2
- Collections: [geo-gse215361](/collections/md/1.md#geo-gse215361)
- Load: `Catalog().dataset("tpp0RkjBcjvol6HE0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-mvpbuf5bpx5a1cbz0000"></a>
## Mouse prostate gland

- uid: `MVpBuF5BPx5a1cbz0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-mvpbuf5bpx5a1cbz0000/
- Technology: Visium
- Organism: mouse
- Tissue: prostate gland
- Modality: RNA
- Observations (spots): 2,385
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295043
- Publication: https://doi.org/10.1016/j.neo.2025.101230
- Collections: [geo-gse295043](/collections/md/d.md#geo-gse295043)
- Load: `Catalog().dataset("MVpBuF5BPx5a1cbz0000").to_sdata()`


<a id="10x-xenium-small-intestine-8pqrcuvlftyobkpy0000"></a>
## Mouse small intestine

- uid: `8pqRCuVLftyOBKPy0000`
- Page: /datasets/10x-xenium-small-intestine-8pqrcuvlftyobkpy0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: small intestine
- Modality: RNA
- Observations (cells): 575,811
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8964409
- Publication: https://doi.org/10.1038/s41586-026-10531-6
- Collections: [geo-gse296053](/collections/md/8.md#geo-gse296053)
- Load: `Catalog().dataset("8pqRCuVLftyOBKPy0000").to_sdata()`


<a id="visium-spatial-gene-expression-lymph-node-e3vtozcj8zj8w1lx0000"></a>
## Human lymph node

- uid: `E3vtOZcj8Zj8w1lx0000`
- Page: /datasets/visium-spatial-gene-expression-lymph-node-e3vtozcj8zj8w1lx0000/
- Technology: Visium
- Organism: human
- Tissue: lymph node
- Modality: RNA
- Observations (spots): 3,384
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE276542
- Publication: https://doi.org/10.1080/2162402X.2026.2660418
- Collections: [geo-gse276542](/collections/md/2.md#geo-gse276542)
- Load: `Catalog().dataset("E3vtOZcj8Zj8w1lx0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-9qzxxydwcakhvse30000"></a>
## Mouse brain

- uid: `9qZxxydWcAkhvsE30000`
- Page: /datasets/visium-spatial-gene-expression-brain-9qzxxydwcakhvse30000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: malaria
- Modality: RNA
- Observations (spots): 2,202
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("9qZxxydWcAkhvsE30000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-ccyeuwkk2zc3dgmx0000"></a>
## Mouse brain

- uid: `cCyEUWkK2zC3Dgmx0000`
- Page: /datasets/visium-spatial-gene-expression-brain-ccyeuwkk2zc3dgmx0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,835
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("cCyEUWkK2zC3Dgmx0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-enncuejhem5xdu3w0000"></a>
## Human pancreas

- uid: `ENNcUEjHEM5XdU3W0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-enncuejhem5xdu3w0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,776
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("ENNcUEjHEM5XdU3W0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-ktzoke6y4apmme9m0000"></a>
## Mouse intestine

- uid: `Ktzoke6Y4APmme9m0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-ktzoke6y4apmme9m0000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 2,691
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
- Publication: https://doi.org/10.1038/s41586-024-08216-z
- Collections: [geo-gse245274](/collections/md/1.md#geo-gse245274)
- Load: `Catalog().dataset("Ktzoke6Y4APmme9m0000").to_sdata()`


<a id="10x-xenium-oropharynx-3ozobrlnv3h134030000"></a>
## Human oropharynx

- uid: `3OzoBrlnv3h134030000`
- Page: /datasets/10x-xenium-oropharynx-3ozobrlnv3h134030000/
- Technology: 10x Xenium
- Organism: human
- Tissue: oropharynx
- Condition: oropharynx squamous cell carcinoma
- Modality: RNA
- Observations (cells): 39,583
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300147
- Publication: https://doi.org/10.1126/sciimmunol.aec3133
- Load: `Catalog().dataset("3OzoBrlnv3h134030000").to_sdata()`


<a id="10x-xenium-heart-xukjj3xgo1rdqmme0000"></a>
## Human heart

- uid: `xUKJj3xGO1RDqMmE0000`
- Page: /datasets/10x-xenium-heart-xukjj3xgo1rdqmme0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: heart
- Condition: heart failure
- Modality: RNA
- Observations (cells): 8,945
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310386
- Load: `Catalog().dataset("xUKJj3xGO1RDqMmE0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreatic-lymph-node-geger1lelshsjjln0000"></a>
## Human pancreatic lymph node

- uid: `gEGeR1LelsHSJJLn0000`
- Page: /datasets/visium-spatial-gene-expression-pancreatic-lymph-node-geger1lelshsjjln0000/
- Technology: Visium
- Organism: human
- Tissue: pancreatic lymph node
- Condition: type 1 diabetes mellitus
- Modality: RNA
- Observations (spots): 1,528
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296626
- Publication: https://doi.org/10.1101/2025.05.19.654940
- Collections: [geo-gse296626](/collections/md/0.md#geo-gse296626)
- Load: `Catalog().dataset("gEGeR1LelsHSJJLn0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-beak1dbv8roimjvz0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `beak1DbV8rOImJvZ0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-beak1dbv8roimjvz0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,991
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("beak1DbV8rOImJvZ0000").to_sdata()`


<a id="10x-xenium-kidney-4aa7meigbu5btyg60000"></a>
## Human kidney

- uid: `4aa7meIGBU5btyG60000`
- Page: /datasets/10x-xenium-kidney-4aa7meigbu5btyg60000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Condition: diabetic kidney disease
- Modality: RNA
- Observations (cells): 20,472
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286186
- Collections: [geo-gse286184](/collections/md/4.md#geo-gse286184)
- Load: `Catalog().dataset("4aa7meIGBU5btyG60000").to_sdata()`


<a id="10x-xenium-kidney-f5aa0qofwu5kqsqp0000"></a>
## Human kidney

- uid: `F5aA0qoFwU5KqSQP0000`
- Page: /datasets/10x-xenium-kidney-f5aa0qofwu5kqsqp0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Condition: diabetic kidney disease
- Modality: RNA
- Observations (cells): 27,155
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286186
- Collections: [geo-gse286184](/collections/md/4.md#geo-gse286184)
- Load: `Catalog().dataset("F5aA0qoFwU5KqSQP0000").to_sdata()`


<a id="visium-spatial-gene-expression-peritoneum-nfbjorcxbjhlh5gx0000"></a>
## Human peritoneum

- uid: `NFBjOrcXbjhLh5gx0000`
- Page: /datasets/visium-spatial-gene-expression-peritoneum-nfbjorcxbjhlh5gx0000/
- Technology: Visium
- Organism: human
- Tissue: peritoneum
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 3,226
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8452870
- Collections: [geo-gse274557](/collections/md/1.md#geo-gse274557)
- Load: `Catalog().dataset("NFBjOrcXbjhLh5gx0000").to_sdata()`


<a id="merfish-brain-lihtbhylu2yyuxhi0000"></a>
## Mouse brain

- uid: `lIHtbhylU2yYUXhi0000`
- Page: /datasets/merfish-brain-lihtbhylu2yyuxhi0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 50,070
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-3.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-3](/collections/md/6.md#abc-zhuang-abca-3)
- Load: `Catalog().dataset("lIHtbhylU2yYUXhi0000").to_sdata()`


<a id="10x-xenium-tail-xx4x85iimlxcioph0000"></a>
## Ambystoma mexicanum tail

- uid: `xX4x85iImlxcIoPH0000`
- Page: /datasets/10x-xenium-tail-xx4x85iimlxcioph0000/
- Technology: 10x Xenium
- Organism: ambystoma mexicanum
- Tissue: tail
- Modality: RNA
- Observations (cells): 2,287
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313338
- Load: `Catalog().dataset("xX4x85iImlxcIoPH0000").to_sdata()`


<a id="vizgen-merscope-middle-temporal-gyrus-qoznselagyapviz20000"></a>
## Human middle temporal gyrus

- uid: `qOZnsELaGyaPViZ20000`
- Page: /datasets/vizgen-merscope-middle-temporal-gyrus-qoznselagyapviz20000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: middle temporal gyrus
- Modality: RNA
- Observations (cells): 18,439
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://portal.brain-map.org/explore/seattle-alzheimers-disease
- Publication: https://doi.org/10.1038/s41593-024-01774-5
- Collections: [seaad-mtg-merfish](/collections/md/6.md#seaad-mtg-merfish)
- Load: `Catalog().dataset("qOZnsELaGyaPViZ20000").to_sdata()`


<a id="vizgen-merscope-middle-temporal-gyrus-0qux4yucp8s5buc20000"></a>
## Human middle temporal gyrus

- uid: `0qux4yUCp8S5buC20000`
- Page: /datasets/vizgen-merscope-middle-temporal-gyrus-0qux4yucp8s5buc20000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: middle temporal gyrus
- Condition: Alzheimer disease
- Modality: RNA
- Observations (cells): 15,583
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://portal.brain-map.org/explore/seattle-alzheimers-disease
- Publication: https://doi.org/10.1038/s41593-024-01774-5
- Collections: [seaad-mtg-merfish](/collections/md/6.md#seaad-mtg-merfish)
- Load: `Catalog().dataset("0qux4yUCp8S5buC20000").to_sdata()`


<a id="10x-xenium-brain-uttndrbzhfjuzjzh0000"></a>
## Human brain

- uid: `utTNDRBzHfjuzJZh0000`
- Page: /datasets/10x-xenium-brain-uttndrbzhfjuzjzh0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Modality: RNA
- Observations (cells): 61,022
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285158
- Publication: https://doi.org/10.1038/s41467-026-71803-3
- Load: `Catalog().dataset("utTNDRBzHfjuzJZh0000").to_sdata()`


<a id="10x-xenium-rectum-wdohwiwgioaqklv90000"></a>
## Human rectum

- uid: `WdOHWiWGIoAqkLv90000`
- Page: /datasets/10x-xenium-rectum-wdohwiwgioaqklv90000/
- Technology: 10x Xenium
- Organism: human
- Tissue: rectum
- Condition: ulcerative colitis
- Modality: RNA
- Observations (cells): 55,499
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330953
- Publication: https://doi.org/10.1126/science.aeh7112
- Load: `Catalog().dataset("WdOHWiWGIoAqkLv90000").to_sdata()`


<a id="10x-xenium-brain-k82pzbilmkhafopw0000"></a>
## Mouse brain

- uid: `K82PZBilMkhAFoPw0000`
- Page: /datasets/10x-xenium-brain-k82pzbilmkhafopw0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 628,934
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326496
- Publication: https://doi.org/10.1007/s10456-025-10019-3
- Load: `Catalog().dataset("K82PZBilMkhAFoPw0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-d2v4k8otcbjodytf0000"></a>
## Macaque basal ganglion

- uid: `d2V4k8OTcBjoDytF0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-d2v4k8otcbjodytf0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 38,482
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("d2V4k8OTcBjoDytF0000").to_sdata()`