# SpatialData-DB datasets, shard db

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-colon-lemjbithi5ge9p640002"></a>
## Human colon

- uid: `LEmjbIthI5Ge9P640002`
- Page: /datasets/visium-spatial-gene-expression-colon-lemjbithi5ge9p640002/
- Technology: Visium
- Organism: human
- Tissue: colon
- Condition: adenocarcinoma
- Modality: RNA
- Observations (spots): 6,487
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/visium-cytassist-gene-expression-libraries-of-post-xenium-human-colon-cancer-ffpe-using-the-human-whole-transcriptome-probe-set-2-standard
- Collections: [visium-cytassist-gene-expression-of-post-xenium-vs-control](/collections/md/c.md#visium-cytassist-gene-expression-of-post-xenium-vs-control)
- Load: `Catalog().dataset("LEmjbIthI5Ge9P640002").to_sdata()`


<a id="visium-spatial-gene-expression-zone-of-skin-wc4cjjsyxcekv9z60000"></a>
## Human zone of skin

- uid: `WC4CjjsyXCekv9Z60000`
- Page: /datasets/visium-spatial-gene-expression-zone-of-skin-wc4cjjsyxcekv9z60000/
- Technology: Visium
- Organism: human
- Tissue: zone of skin
- Condition: Huntington disease
- Modality: RNA
- Observations (spots): 2,516
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333617
- Collections: [geo-gse333617](/collections/md/3.md#geo-gse333617)
- Load: `Catalog().dataset("WC4CjjsyXCekv9Z60000").to_sdata()`


<a id="spatial-transcriptomics-breast-d0zfrruh5lse875e0000"></a>
## Human breast

- uid: `d0ZfRruh5LSE875e0000`
- Page: /datasets/spatial-transcriptomics-breast-d0zfrruh5lse875e0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 421
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aaf2403
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("d0ZfRruh5LSE875e0000").to_sdata()`


<a id="spatial-transcriptomics-breast-iadfavxavlwzxbxw0000"></a>
## Human breast

- uid: `iAdfAvXaVlwZxBxW0000`
- Page: /datasets/spatial-transcriptomics-breast-iadfavxavlwzxbxw0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 338
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aaf2403
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("iAdfAvXaVlwZxBxW0000").to_sdata()`


<a id="spatial-transcriptomics-breast-au2f8vagm9yu14pq0000"></a>
## Human breast

- uid: `au2f8vagM9yU14Pq0000`
- Page: /datasets/spatial-transcriptomics-breast-au2f8vagm9yu14pq0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 603
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/34650042/
- Publication: https://doi.org/10.1038/s41467-021-26271-2
- Collections: [doi-10-1038-s41467-021-26271-2](/collections/md/6.md#doi-10-1038-s41467-021-26271-2)
- Load: `Catalog().dataset("au2f8vagM9yU14Pq0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-whtmnifsmgrfjawd0000"></a>
## Human intestine

- uid: `wHtMnIfSmGrfJAwD0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-whtmnifsmgrfjawd0000/
- Technology: Visium
- Organism: human
- Tissue: intestine
- Condition: colon adenocarcinoma
- Modality: RNA
- Observations (spots): 328
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.biorxiv.org/content/10.1101/2023.01.23.525135v2
- Publication: https://doi.org/10.1101/2023.01.23.525135
- Collections: [doi-10-1101-2023-01-23-525135](/collections/md/f.md#doi-10-1101-2023-01-23-525135)
- Load: `Catalog().dataset("wHtMnIfSmGrfJAwD0000").to_sdata()`


<a id="spatial-transcriptomics-brain-dfftswn90ovyqhnn0000"></a>
## Mouse brain

- uid: `dfFtSWn90ovYQHnn0000`
- Page: /datasets/spatial-transcriptomics-brain-dfftswn90ovyqhnn0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 519
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("dfFtSWn90ovYQHnn0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-8w65g8uuamrqlvbq0000"></a>
## Human brain

- uid: `8W65g8UUaMrQlvBq0000`
- Page: /datasets/visium-spatial-gene-expression-brain-8w65g8uuamrqlvbq0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: medulloblastoma
- Modality: RNA
- Observations (spots): 1,490
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-36071-5
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [doi-10-1038-s41467-023-36071-5](/collections/md/9.md#doi-10-1038-s41467-023-36071-5)
- Load: `Catalog().dataset("8W65g8UUaMrQlvBq0000").to_sdata()`


<a id="visium-hd-kidney-tithpwoipva4s5xj0000"></a>
## Human kidney

- uid: `TIthpwoIpva4s5xj0000`
- Page: /datasets/visium-hd-kidney-tithpwoipva4s5xj0000/
- Technology: Visium HD
- Organism: human
- Tissue: kidney
- Condition: focal segmental glomerulosclerosis
- Modality: RNA
- Observations (bins): 56,758
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9071195
- Collections: [geo-gse300895](/collections/md/4.md#geo-gse300895)
- Load: `Catalog().dataset("TIthpwoIpva4s5xj0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-bh198mqzisb9hse40000"></a>
## Human brain

- uid: `Bh198mqZisB9hSE40000`
- Page: /datasets/visium-spatial-gene-expression-brain-bh198mqzisb9hse40000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 1,883
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235672
- Publication: https://doi.org/10.1038/s43018-023-00598-9
- Collections: [geo-gse235672](/collections/md/b.md#geo-gse235672)
- Load: `Catalog().dataset("Bh198mqZisB9hSE40000").to_sdata()`


<a id="vizgen-merscope-liver-ywntul28gu5hg5k40000"></a>
## Mouse liver

- uid: `yWNtUL28gU5hG5K40000`
- Page: /datasets/vizgen-merscope-liver-ywntul28gu5hg5k40000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (cells): 105,825
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313704
- Collections: [geo-gse313704](/collections/md/9.md#geo-gse313704)
- Load: `Catalog().dataset("yWNtUL28gU5hG5K40000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-q2ktn8cbbd73unei0000"></a>
## Human basal ganglion

- uid: `q2KtN8CbBD73UNei0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-q2ktn8cbbd73unei0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 19,506
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("q2KtN8CbBD73UNei0000").to_sdata()`


<a id="visium-spatial-gene-expression-decidua-basalis-3na1zndwzwzdo23m0000"></a>
## Human decidua basalis

- uid: `3na1ZnDWzwzDO23M0000`
- Page: /datasets/visium-spatial-gene-expression-decidua-basalis-3na1zndwzwzdo23m0000/
- Technology: Visium
- Organism: human
- Tissue: decidua basalis
- Modality: RNA
- Observations (spots): 1,800
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301306
- Publication: https://doi.org/10.1093/humrep/deag078
- Collections: [geo-gse301306](/collections/md/3.md#geo-gse301306)
- Load: `Catalog().dataset("3na1ZnDWzwzDO23M0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-rr3g3onztpslmotd0001"></a>
## Rat heart

- uid: `RR3G3OnztPSlMoTd0001`
- Page: /datasets/visium-spatial-gene-expression-heart-rr3g3onztpslmotd0001/
- Technology: Visium
- Organism: rat
- Tissue: heart
- Condition: myocardial infarction
- Modality: RNA
- Observations (spots): 3,553
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299772
- Publication: https://doi.org/10.1101/2025.11.08.687255
- Collections: [geo-gse299772](/collections/md/2.md#geo-gse299772)
- Load: `Catalog().dataset("RR3G3OnztPSlMoTd0001").to_sdata()`


<a id="visium-spatial-gene-expression-heart-ngbmmhtvtww2qtva0000"></a>
## Rat heart

- uid: `ngbmMHTvtWW2QTVa0000`
- Page: /datasets/visium-spatial-gene-expression-heart-ngbmmhtvtww2qtva0000/
- Technology: Visium
- Organism: rat
- Tissue: heart
- Condition: myocardial infarction
- Modality: RNA
- Observations (spots): 3,709
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299772
- Publication: https://doi.org/10.1101/2025.11.08.687255
- Collections: [geo-gse299772](/collections/md/2.md#geo-gse299772)
- Load: `Catalog().dataset("ngbmMHTvtWW2QTVa0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-zkr1vrpdkytybkro0000"></a>
## Mouse skin of body

- uid: `zkr1VrpdkYTYBKrO0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-zkr1vrpdkytybkro0000/
- Technology: Visium
- Organism: mouse
- Tissue: skin of body
- Modality: RNA
- Observations (spots): 639
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312281
- Load: `Catalog().dataset("zkr1VrpdkYTYBKrO0000").to_sdata()`


<a id="10x-xenium-brain-cmznuxtyn1svgjrf0000"></a>
## Mouse brain

- uid: `cMzNuXTyn1SVgJrF0000`
- Page: /datasets/10x-xenium-brain-cmznuxtyn1svgjrf0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Condition: tauopathy
- Modality: RNA
- Observations (cells): 63,003
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330686
- Publication: https://doi.org/10.1186/s12974-026-03989-8
- Load: `Catalog().dataset("cMzNuXTyn1SVgJrF0000").to_sdata()`


<a id="10x-xenium-urinary-bladder-c21llxjvmd9t7oth0000"></a>
## Human urinary bladder

- uid: `c21lLxjvmd9t7Oth0000`
- Page: /datasets/10x-xenium-urinary-bladder-c21llxjvmd9t7oth0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: urinary bladder
- Condition: urinary bladder carcinoma
- Modality: RNA
- Observations (cells): 16,587
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326226
- Load: `Catalog().dataset("c21lLxjvmd9t7Oth0000").to_sdata()`


<a id="10x-xenium-brain-ihsxybfbeamn3zxa0001"></a>
## Human brain

- uid: `iHSXYBFbeAMN3zxa0001`
- Page: /datasets/10x-xenium-brain-ihsxybfbeamn3zxa0001/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: glioblastoma multiforme
- Modality: RNA
- Observations (cells): 816,769
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/ffpe-human-brain-cancer-data-with-human-immuno-oncology-profiling-panel-and-custom-add-on-1-standard
- Collections: [10x-ffpe-human-brain-cancer-human-immuno-oncology-profiling-panel-custom-add-on](/collections/md/2.md#10x-ffpe-human-brain-cancer-human-immuno-oncology-profiling-panel-custom-add-on)
- Load: `Catalog().dataset("iHSXYBFbeAMN3zxa0001").to_sdata()`


<a id="mibi-tof-breast-52pt0skds6m0lhi80000"></a>
## Human breast

- uid: `52Pt0sKds6m0lHi80000`
- Page: /datasets/mibi-tof-breast-52pt0skds6m0lhi80000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 5,362
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("52Pt0sKds6m0lHi80000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-xdacop37mqkcnrej0000"></a>
## Mouse liver

- uid: `xDAcOp37MqkcnRej0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-xdacop37mqkcnrej0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-03-28_11h48m54s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("xDAcOp37MqkcnRej0000").to_sdata()`


<a id="vizgen-merscope-brain-b5hxqsg9rtohps9t0000"></a>
## Mouse brain

- uid: `B5hxqSG9RTOhpS9t0000`
- Page: /datasets/vizgen-merscope-brain-b5hxqsg9rtohps9t0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 100,179
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("B5hxqSG9RTOhpS9t0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-phetbqkfmbwuovd40000"></a>
## Human lymph node

- uid: `PHetBQKfMBwUOVD40000`
- Page: /datasets/phenocycler-fusion-lymph-node-phetbqkfmbwuovd40000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 14,237
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("PHetBQKfMBwUOVD40000").to_sdata()`


<a id="10x-xenium-brain-irvyagtjhmsdwdua0000"></a>
## Mouse brain

- uid: `iRVyAGTjHmSdwdUa0000`
- Page: /datasets/10x-xenium-brain-irvyagtjhmsdwdua0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Condition: diffuse midline glioma, H3 K27-altered
- Modality: RNA
- Observations (cells): 210,460
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299434
- Publication: https://doi.org/10.1126/scitranslmed.adr1557
- Load: `Catalog().dataset("iRVyAGTjHmSdwdUa0000").to_sdata()`


<a id="vizgen-merscope-unknown-ve5t4jld34veusfs0000"></a>
## Mouse unknown

- uid: `vE5t4jld34Veusfs0000`
- Page: /datasets/vizgen-merscope-unknown-ve5t4jld34veusfs0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: unknown
- Modality: RNA
- Observations (cells): 44,854
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301696
- Load: `Catalog().dataset("vE5t4jld34Veusfs0000").to_sdata()`