# SpatialData-DB datasets, shard da

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-bone-tissue-tw7mhlkmgtnhafpo0000"></a>
## Human bone tissue

- uid: `tw7mHlKMGtnhafpO0000`
- Page: /datasets/visium-spatial-gene-expression-bone-tissue-tw7mhlkmgtnhafpo0000/
- Technology: Visium
- Organism: human
- Tissue: bone tissue
- Condition: estrogen-receptor positive breast cancer
- Modality: RNA
- Observations (spots): 816
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298286
- Publication: https://doi.org/10.1158/0008-5472.CAN-25-3161
- Collections: [geo-gse298286](/collections/md/0.md#geo-gse298286)
- Load: `Catalog().dataset("tw7mHlKMGtnhafpO0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-rchbwxil8pmljlbo0000"></a>
## Mouse spinal cord

- uid: `rChbWXIl8PmLJlBo0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-rchbwxil8pmljlbo0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 287
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("rChbWXIl8PmLJlBo0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-7iglxkdj3efoct3a0000"></a>
## Mouse spinal cord

- uid: `7IgLxkdJ3efocT3A0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-7iglxkdj3efoct3a0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 253
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("7IgLxkdJ3efocT3A0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-tsn5spbedsq4inmf0000"></a>
## Mouse brain

- uid: `tsn5sPBEdSq4iNmF0000`
- Page: /datasets/visium-spatial-gene-expression-brain-tsn5spbedsq4inmf0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,886
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("tsn5sPBEdSq4iNmF0000").to_sdata()`


<a id="visium-spatial-gene-expression-hippocampal-formation-ktrit8wwdt3d4uum0000"></a>
## Human hippocampal formation

- uid: `KtRIT8WwDT3d4uuM0000`
- Page: /datasets/visium-spatial-gene-expression-hippocampal-formation-ktrit8wwdt3d4uum0000/
- Technology: Visium
- Organism: human
- Tissue: hippocampal formation
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE264692
- Collections: [geo-gse264692](/collections/md/2.md#geo-gse264692)
- Load: `Catalog().dataset("KtRIT8WwDT3d4uuM0000").to_sdata()`


<a id="visium-spatial-gene-expression-pons-9ljnc4tteqsovphz0000"></a>
## Human pons

- uid: `9LjNC4tteqSoVPHZ0000`
- Page: /datasets/visium-spatial-gene-expression-pons-9ljnc4tteqsovphz0000/
- Technology: Visium
- Organism: human
- Tissue: pons
- Condition: diffuse intrinsic pontine glioma
- Modality: RNA
- Observations (spots): 4,919
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE280990
- Publication: https://doi.org/10.1186/s40478-025-01952-x
- Collections: [geo-gse280990](/collections/md/b.md#geo-gse280990)
- Load: `Catalog().dataset("9LjNC4tteqSoVPHZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-zu50kdtifd3nop130000"></a>
## Mouse breast

- uid: `Zu50KDTiFd3nop130000`
- Page: /datasets/visium-spatial-gene-expression-breast-zu50kdtifd3nop130000/
- Technology: Visium
- Organism: mouse
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 2,888
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Collections: [geo-gse299631](/collections/md/e.md#geo-gse299631)
- Load: `Catalog().dataset("Zu50KDTiFd3nop130000").to_sdata()`


<a id="visium-spatial-gene-expression-ectocervix-82ptwdlzbulpv7vn0000"></a>
## Human ectocervix

- uid: `82PTWDLzBULPv7vN0000`
- Page: /datasets/visium-spatial-gene-expression-ectocervix-82ptwdlzbulpv7vn0000/
- Technology: Visium
- Organism: human
- Tissue: ectocervix
- Condition: HIV infectious disease
- Modality: RNA
- Observations (spots): 1,180
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8811065
- Collections: [geo-gse290350](/collections/md/0.md#geo-gse290350)
- Load: `Catalog().dataset("82PTWDLzBULPv7vN0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-ux6vz6cou3rvfsnm0000"></a>
## Human pancreas

- uid: `uX6VZ6cou3rvFSnM0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-ux6vz6cou3rvfsnm0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 3,207
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("uX6VZ6cou3rvFSnM0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-5vsyg2urvz1bboq40000"></a>
## Mouse liver

- uid: `5vSYG2URVZ1bboq40000`
- Page: /datasets/visium-spatial-gene-expression-liver-5vsyg2urvz1bboq40000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: visceral leishmaniasis
- Modality: RNA
- Observations (spots): 1,087
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8810740
- Collections: [geo-gse290324](/collections/md/9.md#geo-gse290324)
- Load: `Catalog().dataset("5vSYG2URVZ1bboq40000").to_sdata()`


<a id="merfish-brain-6dzgjqri87y1zxpd0000"></a>
## Mouse brain

- uid: `6dzGJQri87Y1zXpD0000`
- Page: /datasets/merfish-brain-6dzgjqri87y1zxpd0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 14,260
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-3.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-3](/collections/md/6.md#abc-zhuang-abca-3)
- Load: `Catalog().dataset("6dzGJQri87Y1zXpD0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-aiwbqx4kl7clmvv30000"></a>
## Human kidney

- uid: `aIWBQX4Kl7ClmVv30000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-aiwbqx4kl7clmvv30000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 4,760
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-08-21_21h31m20s
- Load: `Catalog().dataset("aIWBQX4Kl7ClmVv30000").to_sdata()`


<a id="mibi-tof-breast-afztocurix9pw9ua0000"></a>
## Human breast

- uid: `afZTocuRiX9pw9UA0000`
- Page: /datasets/mibi-tof-breast-afztocurix9pw9ua0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 579
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("afZTocuRiX9pw9UA0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-ejmp2jasjmw3rirr0000"></a>
## Macaque basal ganglion

- uid: `ejmP2JaSjmW3RirR0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-ejmp2jasjmw3rirr0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 29,267
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("ejmP2JaSjmW3RirR0000").to_sdata()`


<a id="mibi-tof-breast-lab5agadgi0bqxlb0000"></a>
## Human breast

- uid: `laB5agAdgI0bQXlB0000`
- Page: /datasets/mibi-tof-breast-lab5agadgi0bqxlb0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,693
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("laB5agAdgI0bQXlB0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-ovnpjlbc17dt2rbq0000"></a>
## Human kidney

- uid: `ovNPJLBC17dt2rBQ0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-ovnpjlbc17dt2rbq0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 26,445
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2021-04-26_21h05m35s
- Load: `Catalog().dataset("ovNPJLBC17dt2rBQ0000").to_sdata()`


<a id="merfish-brain-zftrpyqohqfoie2d0000"></a>
## Mouse brain

- uid: `ZFtrpYQOHQFoIe2D0000`
- Page: /datasets/merfish-brain-zftrpyqohqfoie2d0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 17,501
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("ZFtrpYQOHQFoIe2D0000").to_sdata()`