# SpatialData-DB datasets, shard d4

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-liver-rov5ebov1ybbbpcg0000"></a>
## Human liver

- uid: `Rov5eboV1yBBbpCg0000`
- Page: /datasets/visium-spatial-gene-expression-liver-rov5ebov1ybbbpcg0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatoblastoma
- Modality: RNA
- Observations (spots): 4,816
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE261958
- Publication: https://doi.org/10.1016/j.jhep.2025.01.031
- Collections: [geo-gse261958](/collections/md/b.md#geo-gse261958)
- Load: `Catalog().dataset("Rov5eboV1yBBbpCg0000").to_sdata()`


<a id="spatial-transcriptomics-brain-frhofjarwdp7g9v40000"></a>
## Mouse brain

- uid: `fRhofJARWdP7G9V40000`
- Page: /datasets/spatial-transcriptomics-brain-frhofjarwdp7g9v40000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 560
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("fRhofJARWdP7G9V40000").to_sdata()`


<a id="spatial-transcriptomics-heart-8wgjjwszg7bz50us0000"></a>
## Human heart

- uid: `8wgJjwSZg7bZ50us0000`
- Page: /datasets/spatial-transcriptomics-heart-8wgjjwszg7bz50us0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 159
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.sciencedirect.com/science/article/pii/S0092867419312826?via%3Dihub
- Publication: https://doi.org/10.1016/j.cell.2019.11.025
- Collections: [doi-10-1016-j-cell-2019-11-025](/collections/md/b.md#doi-10-1016-j-cell-2019-11-025)
- Load: `Catalog().dataset("8wgJjwSZg7bZ50us0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-s9bhqtmverbm1bow0000"></a>
## Mouse brain

- uid: `s9BhqTMVErbM1boW0000`
- Page: /datasets/visium-spatial-gene-expression-brain-s9bhqtmverbm1bow0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,514
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-36071-5
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [doi-10-1038-s41467-023-36071-5](/collections/md/9.md#doi-10-1038-s41467-023-36071-5)
- Load: `Catalog().dataset("s9BhqTMVErbM1boW0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-ycvhm12mlbjnhzyf0000"></a>
## Mouse spinal cord

- uid: `YcvhM12MlBjNhzyF0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-ycvhm12mlbjnhzyf0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 308
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("YcvhM12MlBjNhzyF0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-81mbyehxsgtl2vkd0000"></a>
## Human brain

- uid: `81MbYeHxSGTl2Vkd0000`
- Page: /datasets/visium-spatial-gene-expression-brain-81mbyehxsgtl2vkd0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 2,595
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE237183
- Publication: https://doi.org/10.1016/j.cell.2024.03.029
- Collections: [geo-gse237183](/collections/md/d.md#geo-gse237183)
- Load: `Catalog().dataset("81MbYeHxSGTl2Vkd0000").to_sdata()`


<a id="visium-spatial-gene-expression-quadriceps-femoris-d7coefbtyq5n1wll0000"></a>
## Mouse quadriceps femoris

- uid: `D7CoeFBtYQ5n1Wll0000`
- Page: /datasets/visium-spatial-gene-expression-quadriceps-femoris-d7coefbtyq5n1wll0000/
- Technology: Visium
- Organism: mouse
- Tissue: quadriceps femoris
- Modality: RNA
- Observations (spots): 1,426
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199659
- Publication: https://doi.org/10.1038/s41467-023-40555-9
- Collections: [geo-gse199659](/collections/md/0.md#geo-gse199659)
- Load: `Catalog().dataset("D7CoeFBtYQ5n1Wll0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-dsv81bgu2jpnbsxg0000"></a>
## Mouse brain

- uid: `DSV81BGU2JPNBSxg0000`
- Page: /datasets/visium-spatial-gene-expression-brain-dsv81bgu2jpnbsxg0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,905
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249403
- Publication: https://doi.org/10.1038/s41593-026-02420-y
- Collections: [geo-gse249403](/collections/md/9.md#geo-gse249403)
- Load: `Catalog().dataset("DSV81BGU2JPNBSxg0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-yncv5iilata7ixfz0000"></a>
## Mouse brain

- uid: `yNCv5iILatA7ixfz0000`
- Page: /datasets/visium-spatial-gene-expression-brain-yncv5iilata7ixfz0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,924
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("yNCv5iILatA7ixfz0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-t3nrskeopyxzqzln0000"></a>
## Mouse brain

- uid: `t3nrSKEOpYXzqzLn0000`
- Page: /datasets/visium-spatial-gene-expression-brain-t3nrskeopyxzqzln0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,003
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249403
- Publication: https://doi.org/10.1038/s41593-026-02420-y
- Collections: [geo-gse249403](/collections/md/9.md#geo-gse249403)
- Load: `Catalog().dataset("t3nrSKEOpYXzqzLn0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-mrzyok9idwjjbe2n0000"></a>
## Mouse skin of body

- uid: `mrZyOk9IDwJjbe2N0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-mrzyok9idwjjbe2n0000/
- Technology: Visium
- Organism: mouse
- Tissue: skin of body
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245582
- Publication: https://doi.org/10.1158/0008-5472.CAN-24-0690
- Collections: [geo-gse245582](/collections/md/8.md#geo-gse245582)
- Load: `Catalog().dataset("mrZyOk9IDwJjbe2N0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-sxc8kstm4h6l7vvx0000"></a>
## Human pancreas

- uid: `SXC8ksTM4H6L7vvx0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-sxc8kstm4h6l7vvx0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 3,340
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("SXC8ksTM4H6L7vvx0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-skbxtg4p2nrn2tvz0000"></a>
## Human liver

- uid: `skbXTG4p2NrN2TvZ0000`
- Page: /datasets/visium-spatial-gene-expression-liver-skbxtg4p2nrn2tvz0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: liver cancer
- Modality: RNA
- Observations (spots): 4,658
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312327
- Publication: https://doi.org/10.1038/s44320-026-00205-w
- Collections: [geo-gse312327](/collections/md/e.md#geo-gse312327)
- Load: `Catalog().dataset("skbXTG4p2NrN2TvZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-c6cdz8ski1vy2ktz0000"></a>
## Mouse lung

- uid: `c6cDz8SKi1vy2KTZ0000`
- Page: /datasets/visium-spatial-gene-expression-lung-c6cdz8ski1vy2ktz0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 1,110
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318532
- Publication: https://doi.org/10.1158/2159-8290.CD-25-0191
- Collections: [geo-gse318532](/collections/md/6.md#geo-gse318532)
- Load: `Catalog().dataset("c6cDz8SKi1vy2KTZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-saky1rbfx4uwczlz0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `sAkY1RBFx4uwczLZ0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-saky1rbfx4uwczlz0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: bipolar disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("sAkY1RBFx4uwczLZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-olfactory-bulb-vgrdans9c9uuoetw0000"></a>
## Mouse olfactory bulb

- uid: `vGrdans9c9uuoETW0000`
- Page: /datasets/visium-spatial-gene-expression-olfactory-bulb-vgrdans9c9uuoetw0000/
- Technology: Visium
- Organism: mouse
- Tissue: olfactory bulb
- Modality: RNA
- Observations (spots): 918
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM4656181
- Collections: [geo-gse153859](/collections/md/2.md#geo-gse153859)
- Load: `Catalog().dataset("vGrdans9c9uuoETW0000").to_sdata()`


<a id="visium-spatial-gene-expression-mouth-md2tnyhkh1wx6lw90000"></a>
## Human mouth

- uid: `Md2TNYhKh1WX6lW90000`
- Page: /datasets/visium-spatial-gene-expression-mouth-md2tnyhkh1wx6lw90000/
- Technology: Visium
- Organism: human
- Tissue: mouth
- Condition: oral cavity squamous cell carcinoma
- Modality: RNA
- Observations (spots): 4,199
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6833484
- Collections: [geo-gse220978](/collections/md/2.md#geo-gse220978)
- Load: `Catalog().dataset("Md2TNYhKh1WX6lW90000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-flfiwgv5hn1skulx0000"></a>
## Mouse heart

- uid: `FlFiWGv5Hn1Skulx0000`
- Page: /datasets/visium-spatial-gene-expression-heart-flfiwgv5hn1skulx0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Condition: myocardial infarction
- Modality: RNA
- Observations (spots): 1,153
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5355668
- Collections: [geo-gse176092](/collections/md/0.md#geo-gse176092)
- Load: `Catalog().dataset("FlFiWGv5Hn1Skulx0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-f3z6mhlynutu16gi0000"></a>
## Mouse lung

- uid: `f3z6MHlYnUtu16Gi0000`
- Page: /datasets/visium-spatial-gene-expression-lung-f3z6mhlynutu16gi0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: lung adenocarcinoma
- Modality: RNA
- Observations (spots): 3,405
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306019
- Publication: https://doi.org/10.7150/thno.125898
- Collections: [geo-gse306019](/collections/md/5.md#geo-gse306019)
- Load: `Catalog().dataset("f3z6MHlYnUtu16Gi0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-bnsqnr41hvk8okhr0000"></a>
## Mouse liver

- uid: `BNsQnr41Hvk8OKhR0000`
- Page: /datasets/visium-spatial-gene-expression-liver-bnsqnr41hvk8okhr0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 1,170
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE236424
- Collections: [geo-gse236424](/collections/md/3.md#geo-gse236424)
- Load: `Catalog().dataset("BNsQnr41Hvk8OKhR0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-1vr8o3q83oqnr06q0000"></a>
## Mouse liver

- uid: `1VR8O3q83OqnR06q0000`
- Page: /datasets/visium-spatial-gene-expression-liver-1vr8o3q83oqnr06q0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 1,397
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE236424
- Collections: [geo-gse236424](/collections/md/3.md#geo-gse236424)
- Load: `Catalog().dataset("1VR8O3q83OqnR06q0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-qqkuezkyi7mp89wt0000"></a>
## Human ovary

- uid: `QqKUezKYI7Mp89wt0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-qqkuezkyi7mp89wt0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 624
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327312
- Collections: [geo-gse327312](/collections/md/b.md#geo-gse327312)
- Load: `Catalog().dataset("QqKUezKYI7Mp89wt0000").to_sdata()`


<a id="mibi-tof-breast-8mfwxbeztylnftn70000"></a>
## Human breast

- uid: `8MFwXbEztYlnFTN70000`
- Page: /datasets/mibi-tof-breast-8mfwxbeztylnftn70000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 5,408
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("8MFwXbEztYlnFTN70000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-vwdfgqnplcihs7zz0000"></a>
## Human kidney

- uid: `vwDfGqNPlcIhS7Zz0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-vwdfgqnplcihs7zz0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 3,551
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-08-21_21h38m09s
- Load: `Catalog().dataset("vwDfGqNPlcIhS7Zz0000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-jlt4p4dlkw4hbwtf0000"></a>
## Human skin of body

- uid: `JlT4p4dlKw4hBwTF0000`
- Page: /datasets/vizgen-merscope-skin-of-body-jlt4p4dlkw4hbwtf0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 8,515
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("JlT4p4dlKw4hBwTF0000").to_sdata()`


<a id="imaging-mass-cytometry-kidney-xlurktr11pneyeqz0000"></a>
## Human kidney

- uid: `XlUrKtR11PNEYeQz0000`
- Page: /datasets/imaging-mass-cytometry-kidney-xlurktr11pneyeqz0000/
- Technology: Imaging Mass Cytometry
- Organism: human
- Tissue: kidney
- Modality: protein
- Observations: 1,571
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD3694
- Collections: [bia-s-biad3694](/collections/md/7.md#bia-s-biad3694)
- Load: `Catalog().dataset("XlUrKtR11PNEYeQz0000").to_sdata()`


<a id="vizgen-merscope-unknown-pjy8kii42afjkr2o0000"></a>
## Human unknown

- uid: `pjy8kii42afJkR2o0000`
- Page: /datasets/vizgen-merscope-unknown-pjy8kii42afjkr2o0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: unknown
- Condition: cancer
- Modality: RNA
- Observations (cells): 43,722
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308147
- Publication: https://doi.org/10.1038/s41467-025-64990-y
- Collections: [geo-gsm9238732](/collections/md/9.md#geo-gsm9238732)
- Load: `Catalog().dataset("pjy8kii42afJkR2o0000").to_sdata()`


<a id="merfish-brain-qksaaj8qmbciq7ws0000"></a>
## Mouse brain

- uid: `qKsaaj8QmBCIq7WS0000`
- Page: /datasets/merfish-brain-qksaaj8qmbciq7ws0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 28,489
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("qKsaaj8QmBCIq7WS0000").to_sdata()`


<a id="vizgen-merscope-unknown-nzaghlnakseuwhxq0000"></a>
## Mouse unknown

- uid: `nZaGHlNaksEuWhxq0000`
- Page: /datasets/vizgen-merscope-unknown-nzaghlnakseuwhxq0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: unknown
- Modality: RNA
- Observations (cells): 63,065
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301696
- Load: `Catalog().dataset("nZaGHlNaksEuWhxq0000").to_sdata()`


<a id="mibi-tof-lymph-node-wtrczxjrynbgvcxr0000"></a>
## Human lymph node

- uid: `wTrczxJRYNbgvCXr0000`
- Page: /datasets/mibi-tof-lymph-node-wtrczxjrynbgvcxr0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,600
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("wTrczxJRYNbgvCXr0000").to_sdata()`