# SpatialData-DB datasets, shard c8

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-amygdala-ezajszagf833wdki0000"></a>
## Human amygdala

- uid: `EZaJsZAgf833WDKi0000`
- Page: /datasets/visium-spatial-gene-expression-amygdala-ezajszagf833wdki0000/
- Technology: Visium
- Organism: human
- Tissue: amygdala
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Collections: [geo-gse342709](/collections/md/a.md#geo-gse342709)
- Load: `Catalog().dataset("EZaJsZAgf833WDKi0000").to_sdata()`


<a id="10x-xenium-brain-y56h11po57bvzspl0000"></a>
## Mouse brain

- uid: `y56H11pO57bvzSpl0000`
- Page: /datasets/10x-xenium-brain-y56h11po57bvzspl0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Condition: Alzheimer disease
- Modality: RNA
- Observations (cells): 58,682
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/xenium-in-situ-analysis-of-alzheimers-disease-mouse-model-brain-coronal-sections-from-one-hemisphere-over-a-time-course-1-standard
- Load: `Catalog().dataset("y56H11pO57bvzSpl0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-vahi5zx2kd4z4xo70000"></a>
## Human colon

- uid: `VAHI5ZX2Kd4z4xo70000`
- Page: /datasets/visium-spatial-gene-expression-colon-vahi5zx2kd4z4xo70000/
- Technology: Visium
- Organism: human
- Tissue: colon
- Modality: RNA
- Observations (spots): 11,346
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312204
- Publication: https://doi.org/10.1038/s41467-026-71944-5
- Collections: [geo-gse312204](/collections/md/4.md#geo-gse312204)
- Load: `Catalog().dataset("VAHI5ZX2Kd4z4xo70000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ffu7oxhdbet4rndr0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `FfU7OxhdbET4rnDR0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ffu7oxhdbet4rndr0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("FfU7OxhdbET4rnDR0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-g85ipesc3ek9hstn0000"></a>
## Mouse brain

- uid: `G85IpeSC3eK9HSTn0000`
- Page: /datasets/visium-spatial-gene-expression-brain-g85ipesc3ek9hstn0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,359
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source:                                             
- Collections: [hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice](/collections/md/a.md#hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice)
- Load: `Catalog().dataset("G85IpeSC3eK9HSTn0000").to_sdata()`


<a id="visium-spatial-gene-expression-oral-cavity-soprmimmiisv4yto0000"></a>
## Human oral cavity

- uid: `SoprMimMiIsv4YTO0000`
- Page: /datasets/visium-spatial-gene-expression-oral-cavity-soprmimmiisv4yto0000/
- Technology: Visium
- Organism: human
- Tissue: oral cavity
- Condition: oral cavity squamous cell carcinoma
- Modality: RNA
- Observations (spots): 1,678
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208253
- Publication: https://doi.org/10.1038/s41467-023-40271-4
- Collections: [geo-gse208253](/collections/md/e.md#geo-gse208253)
- Load: `Catalog().dataset("SoprMimMiIsv4YTO0000").to_sdata()`


<a id="visium-spatial-gene-expression-peritoneum-bgxa5ttp6h54nsw00000"></a>
## Human peritoneum

- uid: `bGxA5TtP6h54NSw00000`
- Page: /datasets/visium-spatial-gene-expression-peritoneum-bgxa5ttp6h54nsw00000/
- Technology: Visium
- Organism: human
- Tissue: peritoneum
- Condition: desmoplastic small round cell tumor
- Modality: RNA
- Observations (spots): 4,240
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE263523
- Publication: https://doi.org/10.1016/j.xcrm.2024.101582
- Collections: [geo-gse267806](/collections/md/4.md#geo-gse267806)
- Load: `Catalog().dataset("bGxA5TtP6h54NSw00000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-1ckhzxscvwmdedgo0000"></a>
## Human basal ganglion

- uid: `1CKhZXSCVwmdedgO0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-1ckhzxscvwmdedgo0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 50,798
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("1CKhZXSCVwmdedgO0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-zrqd8r6tgwsxzztt0001"></a>
## Mouse lung

- uid: `ZRQD8r6TgwSxzZTT0001`
- Page: /datasets/visium-spatial-gene-expression-lung-zrqd8r6tgwsxzztt0001/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: malaria
- Modality: RNA
- Observations (spots): 3,680
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("ZRQD8r6TgwSxzZTT0001").to_sdata()`


<a id="visium-spatial-gene-expression-cornea-dmwddw2gqd5ljqji0000"></a>
## Human cornea

- uid: `dMwDDW2gQd5LjqJI0000`
- Page: /datasets/visium-spatial-gene-expression-cornea-dmwddw2gqd5ljqji0000/
- Technology: Visium
- Organism: human
- Tissue: cornea
- Modality: RNA
- Observations (spots): 1,505
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE303036
- Publication: https://doi.org/10.1167/iovs.67.4.7
- Collections: [geo-gse303036](/collections/md/b.md#geo-gse303036)
- Load: `Catalog().dataset("dMwDDW2gQd5LjqJI0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-dnh4rl9znrkbxtk50000"></a>
## Human ovary

- uid: `DNH4rL9znRKbXTK50000`
- Page: /datasets/visium-spatial-gene-expression-ovary-dnh4rl9znrkbxtk50000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 4,116
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274657
- Publication: https://doi.org/10.1038/s42003-025-08771-9
- Collections: [geo-gse274657](/collections/md/5.md#geo-gse274657)
- Load: `Catalog().dataset("DNH4rL9znRKbXTK50000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-3cmjseikzi7rdwik0000"></a>
## Mouse liver

- uid: `3cmjseiKzI7RDWiK0000`
- Page: /datasets/visium-spatial-gene-expression-liver-3cmjseikzi7rdwik0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: malaria
- Modality: RNA
- Observations (spots): 3,572
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("3cmjseiKzI7RDWiK0000").to_sdata()`


<a id="10x-xenium-bone-marrow-i7qhypocmrwyqzul0000"></a>
## Human bone marrow

- uid: `I7QHYPOCmrWyQzUL0000`
- Page: /datasets/10x-xenium-bone-marrow-i7qhypocmrwyqzul0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: bone marrow
- Condition: plasma cell myeloma
- Modality: RNA
- Observations (cells): 73,464
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307661
- Load: `Catalog().dataset("I7QHYPOCmrWyQzUL0000").to_sdata()`


<a id="visium-spatial-gene-expression-small-intestine-unn2r1eb9bs8six60000"></a>
## Mouse small intestine

- uid: `UNN2r1eB9bS8SIx60000`
- Page: /datasets/visium-spatial-gene-expression-small-intestine-unn2r1eb9bs8six60000/
- Technology: Visium
- Organism: mouse
- Tissue: small intestine
- Modality: RNA
- Observations (spots): 4,859
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7106694
- Collections: [geo-gse227742](/collections/md/9.md#geo-gse227742)
- Load: `Catalog().dataset("UNN2r1eB9bS8SIx60000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-gz1j9udwv94kc0jk0000"></a>
## Mouse heart

- uid: `gZ1J9uDwV94kc0jK0000`
- Page: /datasets/visium-spatial-gene-expression-heart-gz1j9udwv94kc0jk0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Condition: myocardial infarction
- Modality: RNA
- Observations (spots): 1,457
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5943191
- Collections: [geo-gse176092](/collections/md/0.md#geo-gse176092)
- Load: `Catalog().dataset("gZ1J9uDwV94kc0jK0000").to_sdata()`


<a id="10x-xenium-lung-dwv8wlbrlydo0og10000"></a>
## Human lung

- uid: `Dwv8wLBrLYdo0Og10000`
- Page: /datasets/10x-xenium-lung-dwv8wlbrlydo0og10000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (cells): 20,345
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE336556
- Publication: https://doi.org/10.1016/j.healun.2026.06.003
- Load: `Catalog().dataset("Dwv8wLBrLYdo0Og10000").to_sdata()`


<a id="10x-xenium-tail-brornysuowrwd2an0000"></a>
## Ambystoma mexicanum tail

- uid: `broRNysUoWRwD2An0000`
- Page: /datasets/10x-xenium-tail-brornysuowrwd2an0000/
- Technology: 10x Xenium
- Organism: ambystoma mexicanum
- Tissue: tail
- Modality: RNA
- Observations (cells): 11,342
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313338
- Load: `Catalog().dataset("broRNysUoWRwD2An0000").to_sdata()`


<a id="10x-xenium-skin-of-body-ghopztosgpheckuk0000"></a>
## Human skin of body

- uid: `gHOpZTOsGPHECkuK0000`
- Page: /datasets/10x-xenium-skin-of-body-ghopztosgpheckuk0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous neuroendocrine carcinoma
- Modality: RNA
- Observations (cells): 213,088
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326660
- Publication: https://doi.org/10.1126/scitranslmed.aea8773
- Collections: [geo-gse326660](/collections/md/a.md#geo-gse326660)
- Load: `Catalog().dataset("gHOpZTOsGPHECkuK0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-6wtvxapx8utsismr0000"></a>
## Human skin of body

- uid: `6WtVxAPx8uTSisMR0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-6wtvxapx8utsismr0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous leishmaniasis
- Modality: RNA
- Observations (spots): 538
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE317987
- Publication: https://doi.org/10.3389/fimmu.2026.1870524
- Collections: [geo-gse317987](/collections/md/a.md#geo-gse317987)
- Load: `Catalog().dataset("6WtVxAPx8uTSisMR0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-pwnhgjl5plh057q60000"></a>
## Mouse heart

- uid: `PwnhGjL5pLh057Q60000`
- Page: /datasets/visium-spatial-gene-expression-heart-pwnhgjl5plh057q60000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Modality: RNA
- Observations (spots): 1,722
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5691528
- Collections: [geo-gse188888](/collections/md/7.md#geo-gse188888)
- Load: `Catalog().dataset("PwnhGjL5pLh057Q60000").to_sdata()`


<a id="merfish-brain-7bwqwnnop2vlnxyr0000"></a>
## Mouse brain

- uid: `7bWqwnNoP2vLnxYr0000`
- Page: /datasets/merfish-brain-7bwqwnnop2vlnxyr0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 17,086
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-3.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-3](/collections/md/6.md#abc-zhuang-abca-3)
- Load: `Catalog().dataset("7bWqwnNoP2vLnxYr0000").to_sdata()`


<a id="vizgen-merscope-brain-ww6zk4pjggevrp6o0000"></a>
## Mouse brain

- uid: `wW6zk4pjggevRp6o0000`
- Page: /datasets/vizgen-merscope-brain-ww6zk4pjggevrp6o0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 112,033
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("wW6zk4pjggevRp6o0000").to_sdata()`


<a id="mibi-tof-breast-immyfndt7wvcksg20000"></a>
## Human breast

- uid: `IMMYFNDt7WVCksg20000`
- Page: /datasets/mibi-tof-breast-immyfndt7wvcksg20000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,292
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("IMMYFNDt7WVCksg20000").to_sdata()`


<a id="10x-xenium-liver-1hygjlc5agnebkld0000"></a>
## Mouse liver

- uid: `1hyGjLC5AGneBKLD0000`
- Page: /datasets/10x-xenium-liver-1hygjlc5agnebkld0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (cells): 156,456
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308969
- Publication: https://doi.org/10.1126/science.adv7129
- Load: `Catalog().dataset("1hyGjLC5AGneBKLD0000").to_sdata()`


<a id="vizgen-merscope-brain-7iupnhngym4z4cit0000"></a>
## Mouse brain

- uid: `7iupnHnGyM4z4Cit0000`
- Page: /datasets/vizgen-merscope-brain-7iupnhngym4z4cit0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 356,514
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269617
- Load: `Catalog().dataset("7iupnHnGyM4z4Cit0000").to_sdata()`


<a id="vizgen-merscope-middle-temporal-gyrus-hb67fbgag615o9va0000"></a>
## Human middle temporal gyrus

- uid: `hb67fbGAg615o9Va0000`
- Page: /datasets/vizgen-merscope-middle-temporal-gyrus-hb67fbgag615o9va0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: middle temporal gyrus
- Modality: RNA
- Observations (cells): 27,977
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://portal.brain-map.org/explore/seattle-alzheimers-disease
- Publication: https://doi.org/10.1038/s41593-024-01774-5
- Collections: [seaad-mtg-merfish](/collections/md/6.md#seaad-mtg-merfish)
- Load: `Catalog().dataset("hb67fbGAg615o9Va0000").to_sdata()`


<a id="10x-xenium-heart-hy5dxhbf64du6rzu0000"></a>
## Human heart

- uid: `hy5DXhbF64du6RZU0000`
- Page: /datasets/10x-xenium-heart-hy5dxhbf64du6rzu0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: heart
- Condition: cardiac sarcoidosis
- Modality: RNA
- Observations (cells): 10,976
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319771
- Publication: https://doi.org/10.1161/CIRCULATIONAHA.126.079304
- Load: `Catalog().dataset("hy5DXhbF64du6RZU0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-wilzjjuantjlrslj0000"></a>
## Human lymph node

- uid: `WILzjJuANtjLRslJ0000`
- Page: /datasets/phenocycler-fusion-lymph-node-wilzjjuantjlrslj0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 13,567
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("WILzjJuANtjLRslJ0000").to_sdata()`


<a id="10x-xenium-small-intestine-psecwlpzybxmwo4d0000"></a>
## Human small intestine

- uid: `pseCWlpzybxMWO4d0000`
- Page: /datasets/10x-xenium-small-intestine-psecwlpzybxmwo4d0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: small intestine
- Condition: Crohn disease
- Modality: RNA
- Observations (cells): 92,990
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296331
- Publication: https://doi.org/10.1016/j.cell.2025.08.029
- Load: `Catalog().dataset("pseCWlpzybxMWO4d0000").to_sdata()`


<a id="10x-xenium-brain-92l7nzrw54ome57h0000"></a>
## Human brain

- uid: `92l7nzrW54OMe57H0000`
- Page: /datasets/10x-xenium-brain-92l7nzrw54ome57h0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (cells): 68,740
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260452
- Publication: https://doi.org/10.1038/s41586-026-10214-2
- Load: `Catalog().dataset("92l7nzrW54OMe57H0000").to_sdata()`


<a id="10x-xenium-common-carotid-artery-plus-branches-epp5q4hn3tmj0mbq0000"></a>
## Human common carotid artery plus branches

- uid: `Epp5Q4hn3tMj0Mbq0000`
- Page: /datasets/10x-xenium-common-carotid-artery-plus-branches-epp5q4hn3tmj0mbq0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: common carotid artery plus branches
- Modality: RNA
- Observations (cells): 18,784
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294466
- Publication: https://doi.org/10.1038/s41467-025-67679-4
- Load: `Catalog().dataset("Epp5Q4hn3tMj0Mbq0000").to_sdata()`


<a id="10x-xenium-lung-ilkfwums2viqyxnl0000"></a>
## Human lung

- uid: `IlKfWuMs2VIqYXNL0000`
- Page: /datasets/10x-xenium-lung-ilkfwums2viqyxnl0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (cells): 89,890
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310162
- Load: `Catalog().dataset("IlKfWuMs2VIqYXNL0000").to_sdata()`