# SpatialData-DB datasets, shard c5

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-hd-brain-995ozkuuvgtlqdbo0000"></a>
## Mouse brain

- uid: `995oZKuuVGTlqdbO0000`
- Page: /datasets/visium-hd-brain-995ozkuuvgtlqdbo0000/
- Technology: Visium HD
- Organism: mouse
- Tissue: brain
- Condition: cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1
- Modality: RNA
- Observations (bins): 267,238
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9817888
- Publication: https://doi.org/10.1038/s44161-026-00844-0
- Collections: [geo-gse335702](/collections/md/0.md#geo-gse335702)
- Load: `Catalog().dataset("995oZKuuVGTlqdbO0000").to_sdata()`


<a id="visium-spatial-gene-expression-middle-frontal-gyrus-x3mgn1nsmwru7syt0000"></a>
## Human middle frontal gyrus

- uid: `x3mgn1NSMWRu7sYt0000`
- Page: /datasets/visium-spatial-gene-expression-middle-frontal-gyrus-x3mgn1nsmwru7syt0000/
- Technology: Visium
- Organism: human
- Tissue: middle frontal gyrus
- Condition: Alzheimer disease
- Modality: RNA
- Observations (spots): 13,866
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE263079
- Publication: https://doi.org/10.1038/s41591-025-03574-1
- Collections: [geo-gse263079](/collections/md/2.md#geo-gse263079)
- Load: `Catalog().dataset("x3mgn1NSMWRu7sYt0000").to_sdata()`


<a id="visium-spatial-gene-expression-neocortex-ukz2n9ltfam0ls6i0000"></a>
## Human neocortex

- uid: `ukz2n9LtFam0Ls6i0000`
- Page: /datasets/visium-spatial-gene-expression-neocortex-ukz2n9ltfam0ls6i0000/
- Technology: Visium
- Organism: human
- Tissue: neocortex
- Modality: RNA
- Observations (spots): 3,888
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326903
- Publication: https://doi.org/10.1016/j.stem.2026.07.014
- Collections: [geo-gse326903](/collections/md/4.md#geo-gse326903)
- Load: `Catalog().dataset("ukz2n9LtFam0Ls6i0000").to_sdata()`


<a id="mibi-tof-breast-qmw4qvta0r6iuoef0000"></a>
## Human breast

- uid: `QmW4qVTA0R6IUoef0000`
- Page: /datasets/mibi-tof-breast-qmw4qvta0r6iuoef0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,101
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("QmW4qVTA0R6IUoef0000").to_sdata()`


<a id="spatial-transcriptomics-brain-k29xuma4ykn5sd4z0000"></a>
## Mouse brain

- uid: `K29xumA4YkN5SD4Z0000`
- Page: /datasets/spatial-transcriptomics-brain-k29xuma4ykn5sd4z0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 508
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("K29xumA4YkN5SD4Z0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-2ni52iptvpjajdwz0000"></a>
## Human heart

- uid: `2NI52ipTVPjajdwZ0000`
- Page: /datasets/visium-spatial-gene-expression-heart-2ni52iptvpjajdwz0000/
- Technology: Visium
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 3,153
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-023-06311-1#data-availability
- Publication: https://doi.org/10.1038/s41586-023-06311-1
- Collections: [doi-10-1038-s41586-023-06311-1](/collections/md/f.md#doi-10-1038-s41586-023-06311-1)
- Load: `Catalog().dataset("2NI52ipTVPjajdwZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-vrbisoii5bcbkm3f0000"></a>
## Human skin of body

- uid: `vrbiSOii5BcBkM3f0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-vrbisoii5bcbkm3f0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: lichen planus
- Modality: RNA
- Observations (spots): 1,000
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("vrbiSOii5BcBkM3f0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-lp2macyibun5ehs30000"></a>
## Human intestine

- uid: `lp2MACyIBUn5EhS30000`
- Page: /datasets/visium-spatial-gene-expression-intestine-lp2macyibun5ehs30000/
- Technology: Visium
- Organism: human
- Tissue: intestine
- Condition: colorectal adenoma
- Modality: RNA
- Observations (spots): 229
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.cell.com/cell/fulltext/S0092-8674(23)01222-9?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867423012229%3Fshowall%3Dtrue#secsectitle0020
- Publication: https://doi.org/10.1016/j.cell.2023.11.006
- Collections: [doi-10-1016-j-cell-2023-11-006](/collections/md/1.md#doi-10-1016-j-cell-2023-11-006)
- Load: `Catalog().dataset("lp2MACyIBUn5EhS30000").to_sdata()`


<a id="visium-hd-lymph-node-hvb0tlwt4ecs2tri0002"></a>
## Human lymph node

- uid: `HVb0TLWt4Ecs2tRi0002`
- Page: /datasets/visium-hd-lymph-node-hvb0tlwt4ecs2tri0002/
- Technology: Visium HD
- Organism: human
- Tissue: lymph node
- Condition: prostate cancer
- Modality: RNA
- Observations (bins): 167,254
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8658292
- Publication: https://doi.org/10.1172/JCI193745
- Collections: [geo-gse283227](/collections/md/3.md#geo-gse283227)
- Load: `Catalog().dataset("HVb0TLWt4Ecs2tRi0002").to_sdata()`


<a id="visium-spatial-gene-expression-brain-e2yymki4o4qthmji0000"></a>
## Mouse brain

- uid: `E2yYmKi4o4QTHmJI0000`
- Page: /datasets/visium-spatial-gene-expression-brain-e2yymki4o4qthmji0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,271
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285858
- Publication: https://doi.org/10.1016/j.neuron.2025.05.014
- Collections: [geo-gse285858](/collections/md/d.md#geo-gse285858)
- Load: `Catalog().dataset("E2yYmKi4o4QTHmJI0000").to_sdata()`


<a id="visium-spatial-gene-expression-descending-colon-j8ctkkoyyskzany60000"></a>
## Mouse descending colon

- uid: `J8cTkkoyYSkZaNy60000`
- Page: /datasets/visium-spatial-gene-expression-descending-colon-j8ctkkoyyskzany60000/
- Technology: Visium
- Organism: mouse
- Tissue: descending colon
- Modality: RNA
- Observations (spots): 502
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235742
- Publication: https://doi.org/10.1126/scitranslmed.adg5252
- Collections: [geo-gse235742](/collections/md/d.md#geo-gse235742)
- Load: `Catalog().dataset("J8cTkkoyYSkZaNy60000").to_sdata()`


<a id="visium-spatial-gene-expression-bone-element-jsejhnjikbwrqwio0000"></a>
## Human bone element

- uid: `JSejHnjiKBwrQwIo0000`
- Page: /datasets/visium-spatial-gene-expression-bone-element-jsejhnjikbwrqwio0000/
- Technology: Visium
- Organism: human
- Tissue: bone element
- Condition: osteosarcoma
- Modality: RNA
- Observations (spots): 1,805
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE293065
- Publication: https://doi.org/10.1038/s41467-026-74603-x
- Collections: [geo-gse293065](/collections/md/7.md#geo-gse293065)
- Load: `Catalog().dataset("JSejHnjiKBwrQwIo0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-lz8nnqzdrklpbpo90000"></a>
## Mouse liver

- uid: `lz8nNqZDRkLpbPO90000`
- Page: /datasets/visium-spatial-gene-expression-liver-lz8nnqzdrklpbpo90000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 3,073
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302815
- Publication: https://doi.org/10.1073/pnas.2521923123
- Collections: [geo-gse302815](/collections/md/8.md#geo-gse302815)
- Load: `Catalog().dataset("lz8nNqZDRkLpbPO90000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-poztelk677xmoa190000"></a>
## Human prostate gland

- uid: `poZtELK677xmoA190000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-poztelk677xmoa190000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 945
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("poZtELK677xmoA190000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-hhrnvs2uwcandfwl0000"></a>
## Mouse lung

- uid: `hHRNvs2UWCAndFwl0000`
- Page: /datasets/visium-spatial-gene-expression-lung-hhrnvs2uwcandfwl0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: malaria
- Modality: RNA
- Observations (spots): 2,919
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("hHRNvs2UWCAndFwl0000").to_sdata()`


<a id="visium-spatial-gene-expression-nasal-cavity-dm4znlxeg2yr4fjz0000"></a>
## Human nasal cavity

- uid: `dM4znlxeg2yr4Fjz0000`
- Page: /datasets/visium-spatial-gene-expression-nasal-cavity-dm4znlxeg2yr4fjz0000/
- Technology: Visium
- Organism: human
- Tissue: nasal cavity
- Condition: adenoid cystic carcinoma
- Modality: RNA
- Observations (spots): 3,276
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342687
- Collections: [geo-gse342687](/collections/md/f.md#geo-gse342687)
- Load: `Catalog().dataset("dM4znlxeg2yr4Fjz0000").to_sdata()`


<a id="visium-hd-ovary-w5kl5ya2kl2pramp0000"></a>
## Mouse ovary

- uid: `W5KL5YA2KL2praMp0000`
- Page: /datasets/visium-hd-ovary-w5kl5ya2kl2pramp0000/
- Technology: Visium HD
- Organism: mouse
- Tissue: ovary
- Modality: RNA
- Observations (bins): 178,952
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9229332
- Collections: [geo-gse307688](/collections/md/6.md#geo-gse307688)
- Load: `Catalog().dataset("W5KL5YA2KL2praMp0000").to_sdata()`


<a id="visium-spatial-gene-expression-testis-ffongvudkugzh08b0000"></a>
## Dog testis

- uid: `ffONgVUDKUgZH08B0000`
- Page: /datasets/visium-spatial-gene-expression-testis-ffongvudkugzh08b0000/
- Technology: Visium
- Organism: dog
- Tissue: testis
- Modality: RNA
- Observations (spots): 4,731
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9982018
- Collections: [geo-gse344594](/collections/md/4.md#geo-gse344594)
- Load: `Catalog().dataset("ffONgVUDKUgZH08B0000").to_sdata()`


<a id="vizgen-merscope-brain-rw4ih3h0ktoq0a9t0000"></a>
## Mouse brain

- uid: `Rw4Ih3H0kTOQ0A9t0000`
- Page: /datasets/vizgen-merscope-brain-rw4ih3h0ktoq0a9t0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 92,787
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("Rw4Ih3H0kTOQ0A9t0000").to_sdata()`


<a id="vizgen-merscope-brain-vynwr6o1ggtctqmz0000"></a>
## Mouse brain

- uid: `vYNwR6O1ggTctQmz0000`
- Page: /datasets/vizgen-merscope-brain-vynwr6o1ggtctqmz0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 32,393
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("vYNwR6O1ggTctQmz0000").to_sdata()`


<a id="merfish-brain-xtjnbw8z6ugnldbz0000"></a>
## Mouse brain

- uid: `xTJNBW8z6ugNLDbz0000`
- Page: /datasets/merfish-brain-xtjnbw8z6ugnldbz0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 100,642
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-3.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-3](/collections/md/6.md#abc-zhuang-abca-3)
- Load: `Catalog().dataset("xTJNBW8z6ugNLDbz0000").to_sdata()`


<a id="stereo-seq-prefrontal-cortex-b3yfcvuhqcdyrkjy0000"></a>
## Human prefrontal cortex

- uid: `b3YfcVuhqcdyrkjY0000`
- Page: /datasets/stereo-seq-prefrontal-cortex-b3yfcvuhqcdyrkjy0000/
- Technology: Stereo-seq
- Organism: human
- Tissue: prefrontal cortex
- Modality: RNA
- Observations: 80,404
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269906
- Collections: [geo-gse269906](/collections/md/5.md#geo-gse269906)
- Load: `Catalog().dataset("b3YfcVuhqcdyrkjY0000").to_sdata()`


<a id="mibi-tof-lymph-node-czrvr8bmerbdm8fh0000"></a>
## Human lymph node

- uid: `CzrvR8bMErbDm8Fh0000`
- Page: /datasets/mibi-tof-lymph-node-czrvr8bmerbdm8fh0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,617
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("CzrvR8bMErbDm8Fh0000").to_sdata()`


<a id="vizgen-merscope-brain-5m9l2mot2oqownkp0000"></a>
## Mouse brain

- uid: `5M9l2MoT2OQoWnkp0000`
- Page: /datasets/vizgen-merscope-brain-5m9l2mot2oqownkp0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 11,855
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("5M9l2MoT2OQoWnkp0000").to_sdata()`


<a id="10x-xenium-lymph-node-vioqscaiuuo0jirs0000"></a>
## Human lymph node

- uid: `VioqSCaiuuo0jiRs0000`
- Page: /datasets/10x-xenium-lymph-node-vioqscaiuuo0jirs0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lymph node
- Condition: ovarian cancer
- Modality: RNA
- Observations (cells): 1,101,585
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE344584
- Load: `Catalog().dataset("VioqSCaiuuo0jiRs0000").to_sdata()`