# SpatialData-DB datasets, shard c3

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-retina-e27plcmnderkihii0000"></a>
## Macaque retina

- uid: `e27pLcMndERkIHiI0000`
- Page: /datasets/visium-spatial-gene-expression-retina-e27plcmnderkihii0000/
- Technology: Visium
- Organism: macaque
- Tissue: retina
- Condition: uveitis
- Modality: RNA
- Observations (spots): 4,728
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304504
- Publication: https://doi.org/10.1016/j.omta.2026.201726
- Collections: [geo-gse304504](/collections/md/0.md#geo-gse304504)
- Load: `Catalog().dataset("e27pLcMndERkIHiI0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-etm3rex6qjg180pe0000"></a>
## Human colon

- uid: `ETm3REX6qjG180pe0000`
- Page: /datasets/visium-spatial-gene-expression-colon-etm3rex6qjg180pe0000/
- Technology: Visium
- Organism: human
- Tissue: colon
- Modality: RNA
- Observations (spots): 3,887
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/platforms/visium/product-family/dataset-human-crc
- Publication: https://doi.org/10.1038/s41588-025-02193-3
- Collections: [oliveira-2024-colorectal](/collections/md/b.md#oliveira-2024-colorectal)
- Load: `Catalog().dataset("ETm3REX6qjG180pe0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-gn2isnbankvngzg10000"></a>
## Mouse spinal cord

- uid: `GN2IsnbAnKVNgZG10000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-gn2isnbankvngzg10000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 290
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("GN2IsnbAnKVNgZG10000").to_sdata()`


<a id="spatial-transcriptomics-breast-vtve4hork6cjbpvc0000"></a>
## Human breast

- uid: `vtve4horK6cJBPVc0000`
- Page: /datasets/spatial-transcriptomics-breast-vtve4hork6cjbpvc0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 254
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/27365449/
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("vtve4horK6cJBPVc0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-gekpwghqryt58lwh0000"></a>
## Human heart

- uid: `GekPWgHQRyt58LWh0000`
- Page: /datasets/visium-spatial-gene-expression-heart-gekpwghqryt58lwh0000/
- Technology: Visium
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 2,338
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-023-06311-1#data-availability
- Publication: https://doi.org/10.1038/s41586-023-06311-1
- Collections: [doi-10-1038-s41586-023-06311-1](/collections/md/f.md#doi-10-1038-s41586-023-06311-1)
- Load: `Catalog().dataset("GekPWgHQRyt58LWh0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-3p9dzabinx3igr6k0000"></a>
## Human heart

- uid: `3p9DzABinx3IgR6K0000`
- Page: /datasets/visium-spatial-gene-expression-heart-3p9dzabinx3igr6k0000/
- Technology: Visium
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 2,697
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-023-06311-1#data-availability
- Publication: https://doi.org/10.1038/s41586-023-06311-1
- Collections: [doi-10-1038-s41586-023-06311-1](/collections/md/f.md#doi-10-1038-s41586-023-06311-1)
- Load: `Catalog().dataset("3p9DzABinx3IgR6K0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-ufapuajhcvd2kq0s0000"></a>
## Human lung

- uid: `UFApUAjhcVd2KQ0S0000`
- Page: /datasets/visium-spatial-gene-expression-lung-ufapuajhcvd2kq0s0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: obsolete idiopathic pulmonary fibrosis
- Modality: RNA
- Observations (spots): 1,982
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285246
- Publication: https://doi.org/10.1183/13993003.00022-2025
- Collections: [geo-gse285246](/collections/md/b.md#geo-gse285246)
- Load: `Catalog().dataset("UFApUAjhcVd2KQ0S0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-pvxfaoskzntsgr2h0000"></a>
## Human kidney

- uid: `pVXFAOSkZnTSGr2H0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-pvxfaoskzntsgr2h0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: clear cell renal carcinoma
- Modality: RNA
- Observations (spots): 1,186
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/35231421/
- Publication: https://doi.org/10.1016/j.immuni.2022.02.001
- Collections: [doi-10-1016-j-immuni-2022-02-001](/collections/md/d.md#doi-10-1016-j-immuni-2022-02-001)
- Load: `Catalog().dataset("pVXFAOSkZnTSGr2H0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-rlo5tbezmzf1qpm30000"></a>
## Human ovary

- uid: `rlo5tBezmZF1qpm30000`
- Page: /datasets/visium-spatial-gene-expression-ovary-rlo5tbezmzf1qpm30000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian cancer
- Modality: RNA
- Observations (spots): 1,979
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE227019
- Publication: https://doi.org/10.1186/s12864-023-09192-w
- Collections: [geo-gse227019](/collections/md/f.md#geo-gse227019)
- Load: `Catalog().dataset("rlo5tBezmZF1qpm30000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-5wfe6lxjvnp77fsd0000"></a>
## Mouse breast

- uid: `5Wfe6lXJVnP77FsD0000`
- Page: /datasets/visium-spatial-gene-expression-breast-5wfe6lxjvnp77fsd0000/
- Technology: Visium
- Organism: mouse
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 925
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Collections: [geo-gse299631](/collections/md/e.md#geo-gse299631)
- Load: `Catalog().dataset("5Wfe6lXJVnP77FsD0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-3bu67zvzsuowpk8p0000"></a>
## Human liver

- uid: `3BU67ZvZsUOWpK8P0000`
- Page: /datasets/visium-spatial-gene-expression-liver-3bu67zvzsuowpk8p0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 2,261
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245908
- Publication: https://doi.org/10.1016/j.celrep.2024.113773
- Collections: [geo-gse245908](/collections/md/f.md#geo-gse245908)
- Load: `Catalog().dataset("3BU67ZvZsUOWpK8P0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-hr84cmrxz1gw0ied0000"></a>
## Human pancreas

- uid: `HR84cMrXZ1gw0IED0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-hr84cmrxz1gw0ied0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Modality: RNA
- Observations (spots): 11,180
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296626
- Publication: https://doi.org/10.1101/2025.05.19.654940
- Collections: [geo-gse296626](/collections/md/0.md#geo-gse296626)
- Load: `Catalog().dataset("HR84cMrXZ1gw0IED0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-t0kthiojygbuj9fi0000"></a>
## Mouse brain

- uid: `T0kTHIoJYgBuJ9Fi0000`
- Page: /datasets/visium-spatial-gene-expression-brain-t0kthiojygbuj9fi0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,969
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275131
- Publication: https://doi.org/10.1016/j.neuropharm.2026.110835
- Collections: [geo-gse275131](/collections/md/1.md#geo-gse275131)
- Load: `Catalog().dataset("T0kTHIoJYgBuJ9Fi0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-lgtkhizx6oafqrgq0000"></a>
## Human basal ganglion

- uid: `lGTKHIZX6OAFQrgq0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-lgtkhizx6oafqrgq0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 41,360
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("lGTKHIZX6OAFQrgq0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-53daonka1ulxgmt50000"></a>
## Human lung

- uid: `53dAOnkA1ULXGMt50000`
- Page: /datasets/visium-spatial-gene-expression-lung-53daonka1ulxgmt50000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: obsolete idiopathic pulmonary fibrosis
- Modality: RNA
- Observations (spots): 3,642
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285246
- Publication: https://doi.org/10.1183/13993003.00022-2025
- Collections: [geo-gse285246](/collections/md/b.md#geo-gse285246)
- Load: `Catalog().dataset("53dAOnkA1ULXGMt50000").to_sdata()`


<a id="spatial-transcriptomics-brain-q2we19b2lxucwmut0002"></a>
## Mouse brain

- uid: `Q2We19B2lXUCwmUt0002`
- Page: /datasets/spatial-transcriptomics-brain-q2we19b2lxucwmut0002/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 512
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("Q2We19B2lXUCwmUt0002").to_sdata()`


<a id="visium-spatial-gene-expression-brain-white-matter-xbnidrc4bqj97dnk0000"></a>
## Human brain white matter

- uid: `xBnIDRC4Bqj97DNK0000`
- Page: /datasets/visium-spatial-gene-expression-brain-white-matter-xbnidrc4bqj97dnk0000/
- Technology: Visium
- Organism: human
- Tissue: brain white matter
- Condition: multiple sclerosis
- Modality: RNA
- Observations (spots): 3,912
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE277435
- Publication: https://doi.org/10.1038/s41467-025-63371-9
- Collections: [geo-gse277435](/collections/md/0.md#geo-gse277435)
- Load: `Catalog().dataset("xBnIDRC4Bqj97DNK0000").to_sdata()`


<a id="visium-spatial-gene-expression-placenta-yrk23zyvyhpfsn290000"></a>
## Mouse placenta

- uid: `yrK23zyVyhPfsN290000`
- Page: /datasets/visium-spatial-gene-expression-placenta-yrk23zyvyhpfsn290000/
- Technology: Visium
- Organism: mouse
- Tissue: placenta
- Modality: RNA
- Observations (spots): 2,898
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8785671
- Collections: [geo-gse289170](/collections/md/3.md#geo-gse289170)
- Load: `Catalog().dataset("yrK23zyVyhPfsN290000").to_sdata()`


<a id="visium-spatial-gene-expression-locus-ceruleus-3nrlpwpzhsww8ygl0000"></a>
## Human locus ceruleus

- uid: `3nrLPWPZHsww8YgL0000`
- Page: /datasets/visium-spatial-gene-expression-locus-ceruleus-3nrlpwpzhsww8ygl0000/
- Technology: Visium
- Organism: human
- Tissue: locus ceruleus
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307866
- Publication: https://doi.org/10.1101/2025.10.29.685354
- Collections: [geo-gse307866](/collections/md/9.md#geo-gse307866)
- Load: `Catalog().dataset("3nrLPWPZHsww8YgL0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-dkuzjjl32168jn9k0000"></a>
## Mouse breast

- uid: `DKuzjjL32168jN9K0000`
- Page: /datasets/visium-spatial-gene-expression-breast-dkuzjjl32168jn9k0000/
- Technology: Visium
- Organism: mouse
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 2,776
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Collections: [geo-gse299631](/collections/md/e.md#geo-gse299631)
- Load: `Catalog().dataset("DKuzjjL32168jN9K0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-gx2ftbadtepfzdm10000"></a>
## Human dorsolateral prefrontal cortex

- uid: `gX2ftBadtePfzdM10000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-gx2ftbadtepfzdm10000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("gX2ftBadtePfzdM10000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-3wdmig08tauifmzf0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `3wDmiG08TauifMzF0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-3wdmig08tauifmzf0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("3wDmiG08TauifMzF0000").to_sdata()`


<a id="visium-spatial-gene-expression-gastrocnemius-sdmf1zzp4wewe7nd0000"></a>
## Mouse gastrocnemius

- uid: `SDMf1ZZp4wewE7nd0000`
- Page: /datasets/visium-spatial-gene-expression-gastrocnemius-sdmf1zzp4wewe7nd0000/
- Technology: Visium
- Organism: mouse
- Tissue: gastrocnemius
- Condition: Duchenne muscular dystrophy
- Modality: RNA
- Observations (spots): 653
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6996262
- Collections: [geo-gse223813](/collections/md/b.md#geo-gse223813)
- Load: `Catalog().dataset("SDMf1ZZp4wewE7nd0000").to_sdata()`


<a id="visium-spatial-gene-expression-cornea-dmkrwi0gtg4jcx7c0000"></a>
## Human cornea

- uid: `DMkRWi0gTg4jcx7c0000`
- Page: /datasets/visium-spatial-gene-expression-cornea-dmkrwi0gtg4jcx7c0000/
- Technology: Visium
- Organism: human
- Tissue: cornea
- Modality: RNA
- Observations (spots): 1,727
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE303036
- Publication: https://doi.org/10.1167/iovs.67.4.7
- Collections: [geo-gse303036](/collections/md/b.md#geo-gse303036)
- Load: `Catalog().dataset("DMkRWi0gTg4jcx7c0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-ornjann0xay3awpp0000"></a>
## Human brain

- uid: `oRNjaNn0xaY3awpP0000`
- Page: /datasets/visium-spatial-gene-expression-brain-ornjann0xay3awpp0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 821
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9497622
- Collections: [geo-gse318562](/collections/md/3.md#geo-gse318562)
- Load: `Catalog().dataset("oRNjaNn0xaY3awpP0000").to_sdata()`


<a id="10x-xenium-tail-tbuwofaxfh5iky6k0000"></a>
## Ambystoma mexicanum tail

- uid: `TBuwofAXfh5iKy6K0000`
- Page: /datasets/10x-xenium-tail-tbuwofaxfh5iky6k0000/
- Technology: 10x Xenium
- Organism: ambystoma mexicanum
- Tissue: tail
- Modality: RNA
- Observations (cells): 7,375
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313338
- Load: `Catalog().dataset("TBuwofAXfh5iKy6K0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-r92zrjktkgqxcgf20000"></a>
## Human dorsolateral prefrontal cortex

- uid: `R92ZRJKTKgqxCGF20000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-r92zrjktkgqxcgf20000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: bipolar disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("R92ZRJKTKgqxCGF20000").to_sdata()`


<a id="10x-xenium-liver-vsmi55t4hgli3au50000"></a>
## Mouse liver

- uid: `VsMi55T4HgLi3au50000`
- Page: /datasets/10x-xenium-liver-vsmi55t4hgli3au50000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: liver
- Condition: melanoma
- Modality: RNA
- Observations (cells): 189,840
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE280741
- Publication: https://doi.org/10.1158/2767-9764.CRC-24-0498
- Load: `Catalog().dataset("VsMi55T4HgLi3au50000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-neync7ymaw7ndbxv0000"></a>
## Human liver

- uid: `NEYnc7YMaw7nDBXV0000`
- Page: /datasets/visium-spatial-gene-expression-liver-neync7ymaw7ndbxv0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Modality: RNA
- Observations (spots): 1,078
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE338525
- Publication: https://doi.org/10.1097/HC9.0000000000000992
- Collections: [geo-gse338525](/collections/md/1.md#geo-gse338525)
- Load: `Catalog().dataset("NEYnc7YMaw7nDBXV0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-wnzk1xfgyaref3hl0000"></a>
## Mouse lung

- uid: `wNZk1xFGyAREF3HL0000`
- Page: /datasets/visium-spatial-gene-expression-lung-wnzk1xfgyaref3hl0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: lung cancer
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295967
- Collections: [geo-gse295967](/collections/md/1.md#geo-gse295967)
- Load: `Catalog().dataset("wNZk1xFGyAREF3HL0000").to_sdata()`


<a id="merfish-brain-eoib4yrphr4j0rbq0000"></a>
## Mouse brain

- uid: `EOiB4yrphR4J0RBQ0000`
- Page: /datasets/merfish-brain-eoib4yrphr4j0rbq0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 14,253
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("EOiB4yrphR4J0RBQ0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-s0ixid6cdg0v1gtu0000"></a>
## Macaque basal ganglion

- uid: `s0ixid6Cdg0v1gtu0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-s0ixid6cdg0v1gtu0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 10,320
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("s0ixid6Cdg0v1gtu0000").to_sdata()`


<a id="merfish-brain-jnozu0cze0dvs0ea0000"></a>
## Mouse brain

- uid: `jnOzu0czE0dVS0ea0000`
- Page: /datasets/merfish-brain-jnozu0cze0dvs0ea0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 27,773
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("jnOzu0czE0dVS0ea0000").to_sdata()`


<a id="vizgen-merscope-brain-8b1xfvmpfpgvzht00000"></a>
## Mouse brain

- uid: `8b1XFvMpFpgvzHT00000`
- Page: /datasets/vizgen-merscope-brain-8b1xfvmpfpgvzht00000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 13,963
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("8b1XFvMpFpgvzHT00000").to_sdata()`


<a id="mibi-tof-breast-6txw61tyk0odubc30000"></a>
## Human breast

- uid: `6TXw61TYk0oduBC30000`
- Page: /datasets/mibi-tof-breast-6txw61tyk0odubc30000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,483
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("6TXw61TYk0oduBC30000").to_sdata()`


<a id="mibi-tof-breast-urhdqrzkqyht9qzh0000"></a>
## Human breast

- uid: `UrhDqRzKQyht9qZh0000`
- Page: /datasets/mibi-tof-breast-urhdqrzkqyht9qzh0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,239
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("UrhDqRzKQyht9qZh0000").to_sdata()`


<a id="mibi-tof-brain-fwbdqpx99jboyrzk0000"></a>
## Human brain

- uid: `fwbDQPX99jbOYRZk0000`
- Page: /datasets/mibi-tof-brain-fwbdqpx99jboyrzk0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: brain
- Condition: glioma
- Modality: protein
- Observations: 2,042
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1579
- Collections: [bia-s-biad1579](/collections/md/2.md#bia-s-biad1579)
- Load: `Catalog().dataset("fwbDQPX99jbOYRZk0000").to_sdata()`


<a id="vizgen-merscope-unknown-yrm0tg1rlpjryvpo0000"></a>
## Human unknown

- uid: `yRM0Tg1RLPjRYVpo0000`
- Page: /datasets/vizgen-merscope-unknown-yrm0tg1rlpjryvpo0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: unknown
- Condition: cancer
- Modality: RNA
- Observations (cells): 30,774
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308147
- Publication: https://doi.org/10.1038/s41467-025-64990-y
- Load: `Catalog().dataset("yRM0Tg1RLPjRYVpo0000").to_sdata()`


<a id="10x-xenium-lumbar-spinal-cord-qu2bmzt2n4miyaq10000"></a>
## Mouse lumbar spinal cord

- uid: `QU2bmzT2n4Miyaq10000`
- Page: /datasets/10x-xenium-lumbar-spinal-cord-qu2bmzt2n4miyaq10000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lumbar spinal cord
- Modality: RNA
- Observations (cells): 24,778
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE344871
- Load: `Catalog().dataset("QU2bmzT2n4Miyaq10000").to_sdata()`


<a id="vizgen-merscope-unknown-uogdjihqbpiqrgjg0000"></a>
## Human unknown

- uid: `uogdJIHqBpiqrgjg0000`
- Page: /datasets/vizgen-merscope-unknown-uogdjihqbpiqrgjg0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: unknown
- Condition: cancer
- Modality: RNA
- Observations (cells): 179,248
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308147
- Publication: https://doi.org/10.1038/s41467-025-64990-y
- Load: `Catalog().dataset("uogdJIHqBpiqrgjg0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-umimvmji3ucjdhwa0000"></a>
## Human kidney

- uid: `UmIMVmJI3ucjdHWa0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-umimvmji3ucjdhwa0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 3,850
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-01-31_22h59m26s
- Load: `Catalog().dataset("UmIMVmJI3ucjdHWa0000").to_sdata()`


<a id="10x-xenium-coronary-artery-rn5h8smkajc43qfj0000"></a>
## Human coronary artery

- uid: `RN5h8smkAJC43QFj0000`
- Page: /datasets/10x-xenium-coronary-artery-rn5h8smkajc43qfj0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: coronary artery
- Condition: atherosclerosis
- Modality: RNA
- Observations (cells): 19,268
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE314854
- Publication: https://doi.org/10.1126/science.adx1736
- Load: `Catalog().dataset("RN5h8smkAJC43QFj0000").to_sdata()`


<a id="mibi-tof-breast-cuvzbvwhpmxrj6up0000"></a>
## Human breast

- uid: `CUVZBVWhPMxRJ6UP0000`
- Page: /datasets/mibi-tof-breast-cuvzbvwhpmxrj6up0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,812
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("CUVZBVWhPMxRJ6UP0000").to_sdata()`


<a id="10x-xenium-common-carotid-artery-plus-branches-n1tbsgp1ioxyfl5b0000"></a>
## Human common carotid artery plus branches

- uid: `n1tbSGp1IOxyFl5b0000`
- Page: /datasets/10x-xenium-common-carotid-artery-plus-branches-n1tbsgp1ioxyfl5b0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: common carotid artery plus branches
- Condition: atherosclerosis
- Modality: RNA
- Observations (cells): 15,532
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294466
- Publication: https://doi.org/10.1038/s41467-025-67679-4
- Load: `Catalog().dataset("n1tbSGp1IOxyFl5b0000").to_sdata()`


<a id="mibi-tof-breast-qtm1oc4i72amryus0000"></a>
## Human breast

- uid: `QTm1OC4i72AMRyUS0000`
- Page: /datasets/mibi-tof-breast-qtm1oc4i72amryus0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 5,861
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("QTm1OC4i72AMRyUS0000").to_sdata()`


<a id="10x-xenium-small-intestine-j1u8gu1gwsxu0ix80000"></a>
## Human small intestine

- uid: `J1u8gU1GWsXU0ix80000`
- Page: /datasets/10x-xenium-small-intestine-j1u8gu1gwsxu0ix80000/
- Technology: 10x Xenium
- Organism: human
- Tissue: small intestine
- Condition: Crohn disease
- Modality: RNA
- Observations (cells): 219,675
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296331
- Publication: https://doi.org/10.1016/j.cell.2025.08.029
- Load: `Catalog().dataset("J1u8gU1GWsXU0ix80000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-tshfho1dqgnzhugb0000"></a>
## Human kidney

- uid: `TshFHo1DQGNzhUgb0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-tshfho1dqgnzhugb0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 3,040
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-01-31_21h45m17s
- Load: `Catalog().dataset("TshFHo1DQGNzhUgb0000").to_sdata()`


<a id="10x-xenium-brain-ouf1gimjawbegirs0000"></a>
## Human brain

- uid: `oUF1giMJaWbegIrS0000`
- Page: /datasets/10x-xenium-brain-ouf1gimjawbegirs0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: glioma
- Modality: RNA
- Observations (cells): 1,757
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302502
- Publication: https://doi.org/10.1016/j.immuni.2025.09.018
- Load: `Catalog().dataset("oUF1giMJaWbegIrS0000").to_sdata()`


<a id="10x-xenium-heart-jgywpgfydsrhdhm70000"></a>
## Human heart

- uid: `jGYWpgfYDSRHdhm70000`
- Page: /datasets/10x-xenium-heart-jgywpgfydsrhdhm70000/
- Technology: 10x Xenium
- Organism: human
- Tissue: heart
- Condition: cardiac sarcoidosis
- Modality: RNA
- Observations (cells): 35,573
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319771
- Publication: https://doi.org/10.1161/CIRCULATIONAHA.126.079304
- Load: `Catalog().dataset("jGYWpgfYDSRHdhm70000").to_sdata()`


<a id="10x-xenium-heart-chab7oie138bajho0000"></a>
## Human heart

- uid: `chAb7OiE138baJHO0000`
- Page: /datasets/10x-xenium-heart-chab7oie138bajho0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: heart
- Condition: cardiac sarcoidosis
- Modality: RNA
- Observations (cells): 26,610
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319771
- Publication: https://doi.org/10.1161/CIRCULATIONAHA.126.079304
- Load: `Catalog().dataset("chAb7OiE138baJHO0000").to_sdata()`


<a id="mibi-tof-breast-sdgqotxzflg0xms40000"></a>
## Human breast

- uid: `SdgqoTxzflg0XMS40000`
- Page: /datasets/mibi-tof-breast-sdgqotxzflg0xms40000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 352
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("SdgqoTxzflg0XMS40000").to_sdata()`