# SpatialData-DB datasets, shard c2

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="spatial-transcriptomics-spinal-cord-sn2hdcoynj1qx2nm0000"></a>
## Mouse spinal cord

- uid: `SN2hDcoyNJ1qX2NM0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-sn2hdcoynj1qx2nm0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 301
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("SN2hDcoyNJ1qX2NM0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-jtdbiakz1z5zimxz0000"></a>
## Human skin of body

- uid: `jtdBIAKz1Z5zImXz0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-jtdbiakz1z5zimxz0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: lichen planus
- Modality: RNA
- Observations (spots): 1,951
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("jtdBIAKz1Z5zImXz0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-rgjonr3qwd2jdit00000"></a>
## Human brain

- uid: `rGJONR3qwd2jDIt00000`
- Page: /datasets/visium-spatial-gene-expression-brain-rgjonr3qwd2jdit00000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 1,876
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235672
- Publication: https://doi.org/10.1038/s43018-023-00598-9
- Collections: [geo-gse235672](/collections/md/b.md#geo-gse235672)
- Load: `Catalog().dataset("rGJONR3qwd2jDIt00000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-oikbvsrk2re2e6hg0000"></a>
## Human brain

- uid: `OikBvsRK2re2E6HG0000`
- Page: /datasets/visium-spatial-gene-expression-brain-oikbvsrk2re2e6hg0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: medulloblastoma
- Modality: RNA
- Observations (spots): 1,943
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-36071-5
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [doi-10-1038-s41467-023-36071-5](/collections/md/9.md#doi-10-1038-s41467-023-36071-5)
- Load: `Catalog().dataset("OikBvsRK2re2E6HG0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-uahwl4butryaldmb0000"></a>
## Mouse skin of body

- uid: `UaHWL4bUTRyALdMb0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-uahwl4butryaldmb0000/
- Technology: Visium
- Organism: mouse
- Tissue: skin of body
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245582
- Publication: https://doi.org/10.1158/0008-5472.CAN-24-0690
- Collections: [geo-gse245582](/collections/md/8.md#geo-gse245582)
- Load: `Catalog().dataset("UaHWL4bUTRyALdMb0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-elmpsym5wjbcbizz0000"></a>
## Human pancreas

- uid: `ElmPsYM5WJBcBiZz0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-elmpsym5wjbcbizz0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: type 1 diabetes mellitus
- Modality: RNA
- Observations (spots): 10,742
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296626
- Publication: https://doi.org/10.1101/2025.05.19.654940
- Collections: [geo-gse296626](/collections/md/0.md#geo-gse296626)
- Load: `Catalog().dataset("ElmPsYM5WJBcBiZz0000").to_sdata()`


<a id="visium-spatial-gene-expression-cerebellum-5y4oiz6hj1aywxgy0000"></a>
## Mouse cerebellum

- uid: `5Y4OIZ6hJ1aYWxGy0000`
- Page: /datasets/visium-spatial-gene-expression-cerebellum-5y4oiz6hj1aywxgy0000/
- Technology: Visium
- Organism: mouse
- Tissue: cerebellum
- Modality: RNA
- Observations (spots): 3,349
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296375
- Publication: https://doi.org/10.1038/s42003-026-10034-0
- Collections: [geo-gse296375](/collections/md/f.md#geo-gse296375)
- Load: `Catalog().dataset("5Y4OIZ6hJ1aYWxGy0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-uzorg1v9eeeqa1bl0000"></a>
## Mouse breast

- uid: `UzORg1V9EeeQa1BL0000`
- Page: /datasets/visium-spatial-gene-expression-breast-uzorg1v9eeeqa1bl0000/
- Technology: Visium
- Organism: mouse
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 2,771
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Collections: [geo-gse299631](/collections/md/e.md#geo-gse299631)
- Load: `Catalog().dataset("UzORg1V9EeeQa1BL0000").to_sdata()`


<a id="spatial-transcriptomics-skin-of-body-ytrs2j6bybsnzouy0001"></a>
## Human skin of body

- uid: `YTRS2J6byBSnZouy0001`
- Page: /datasets/spatial-transcriptomics-skin-of-body-ytrs2j6bybsnzouy0001/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: skin of body
- Condition: skin squamous cell carcinoma
- Modality: RNA
- Observations (spots): 666
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7391009/
- Publication: https://doi.org/10.1016/j.cell.2020.05.039
- Collections: [doi-10-1016-j-cell-2020-05-039](/collections/md/0.md#doi-10-1016-j-cell-2020-05-039)
- Load: `Catalog().dataset("YTRS2J6byBSnZouy0001").to_sdata()`


<a id="visium-spatial-gene-expression-amygdala-pop38gxeehtzs3f10000"></a>
## Human amygdala

- uid: `Pop38GxEehTzS3F10000`
- Page: /datasets/visium-spatial-gene-expression-amygdala-pop38gxeehtzs3f10000/
- Technology: Visium
- Organism: human
- Tissue: amygdala
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Collections: [geo-gse342709](/collections/md/a.md#geo-gse342709)
- Load: `Catalog().dataset("Pop38GxEehTzS3F10000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-mjuquynqbtujm6ts0000"></a>
## Human liver

- uid: `MJuqUYnqbTUJm6Ts0000`
- Page: /datasets/visium-spatial-gene-expression-liver-mjuquynqbtujm6ts0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: biliary atresia
- Modality: RNA
- Observations (spots): 1,224
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE338525
- Publication: https://doi.org/10.1097/HC9.0000000000000992
- Collections: [geo-gse338525](/collections/md/1.md#geo-gse338525)
- Load: `Catalog().dataset("MJuqUYnqbTUJm6Ts0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-ex9t5lxwocm1yoks0000"></a>
## Mouse liver

- uid: `ex9T5lXwOCm1YokS0000`
- Page: /datasets/visium-spatial-gene-expression-liver-ex9t5lxwocm1yoks0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 1,258
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE236424
- Collections: [geo-gse236424](/collections/md/3.md#geo-gse236424)
- Load: `Catalog().dataset("ex9T5lXwOCm1YokS0000").to_sdata()`


<a id="10x-xenium-skin-of-body-imyo1lowcfauusgl0000"></a>
## Human skin of body

- uid: `IMyO1LowcFauuSGl0000`
- Page: /datasets/10x-xenium-skin-of-body-imyo1lowcfauusgl0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: acne
- Modality: RNA
- Observations (cells): 17,841
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301280
- Load: `Catalog().dataset("IMyO1LowcFauuSGl0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-83linorswqab21ha0000"></a>
## Mouse brain

- uid: `83LinORsWQAb21hA0000`
- Page: /datasets/visium-spatial-gene-expression-brain-83linorswqab21ha0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,169
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM4644081
- Collections: [geo-gse153424](/collections/md/c.md#geo-gse153424)
- Load: `Catalog().dataset("83LinORsWQAb21hA0000").to_sdata()`


<a id="merfish-brain-6usvljryjdlm9mgv0000"></a>
## Mouse brain

- uid: `6uSVljRyJdlM9MGv0000`
- Page: /datasets/merfish-brain-6usvljryjdlm9mgv0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 22,979
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("6uSVljRyJdlM9MGv0000").to_sdata()`


<a id="vizgen-merscope-liver-qqtd8yuxzjmuu8as0000"></a>
## Human liver

- uid: `QqtD8yUXzJmUU8AS0000`
- Page: /datasets/vizgen-merscope-liver-qqtd8yuxzjmuu8as0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (cells): 741,097
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327192
- Publication: https://doi.org/10.1126/science.ady1678
- Load: `Catalog().dataset("QqtD8yUXzJmUU8AS0000").to_sdata()`


<a id="vizgen-merscope-lung-2wwdi8x5fkwbjwl50000"></a>
## Human lung

- uid: `2WwDI8x5fkwBjWL50000`
- Page: /datasets/vizgen-merscope-lung-2wwdi8x5fkwbjwl50000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: lung
- Condition: non-small cell lung carcinoma
- Modality: RNA
- Observations (cells): 770,269
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327192
- Publication: https://doi.org/10.1126/science.ady1678
- Load: `Catalog().dataset("2WwDI8x5fkwBjWL50000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-qdxg05bwx0utwhht0000"></a>
## Human kidney

- uid: `QDXg05BWx0uTWhhT0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-qdxg05bwx0utwhht0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 48,336
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-09-12_19h43m40s
- Load: `Catalog().dataset("QDXg05BWx0uTWhhT0000").to_sdata()`


<a id="mibi-tof-lymph-node-ywdjnmztq33hyegr0000"></a>
## Human lymph node

- uid: `yWdJNmzTQ33HYeGR0000`
- Page: /datasets/mibi-tof-lymph-node-ywdjnmztq33hyegr0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 5,923
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("yWdJNmzTQ33HYeGR0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-wqcbfnn6auplsazo0000"></a>
## Human kidney

- uid: `wQCbfnN6AUPLSaZo0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-wqcbfnn6auplsazo0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 11,868
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-08-03_02h04m35s
- Load: `Catalog().dataset("wQCbfnN6AUPLSaZo0000").to_sdata()`


<a id="mibi-tof-breast-rqnojteg6z34rfua0000"></a>
## Human breast

- uid: `rqNojTEG6z34rFUa0000`
- Page: /datasets/mibi-tof-breast-rqnojteg6z34rfua0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,095
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("rqNojTEG6z34rFUa0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-8qlun9ifev0kaywh0000"></a>
## Mouse liver

- uid: `8qlun9ifEV0kaYWh0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-8qlun9ifev0kaywh0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-04-11_10h28m11s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("8qlun9ifEV0kaYWh0000").to_sdata()`


<a id="vizgen-merscope-olfactory-bulb-tkzsqjt3l1a4jx0v0000"></a>
## Mouse olfactory bulb

- uid: `TKZSQJT3L1a4JX0v0000`
- Page: /datasets/vizgen-merscope-olfactory-bulb-tkzsqjt3l1a4jx0v0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: olfactory bulb
- Modality: RNA
- Observations (cells): 38,648
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221106
- Collections: [geo-gse221106](/collections/md/5.md#geo-gse221106)
- Load: `Catalog().dataset("TKZSQJT3L1a4JX0v0000").to_sdata()`


<a id="10x-xenium-brain-q3hcqe4rvsprdbv40000"></a>
## Human brain

- uid: `Q3HCqe4rvspRDbV40000`
- Page: /datasets/10x-xenium-brain-q3hcqe4rvsprdbv40000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: atypical teratoid rhabdoid tumor
- Modality: RNA
- Observations (cells): 13,178
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283843
- Publication: https://doi.org/10.1093/neuonc/noaf179
- Load: `Catalog().dataset("Q3HCqe4rvspRDbV40000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-ordue3igm3wj22dy0000"></a>
## Human skin of body

- uid: `orduE3IGm3wJ22dy0000`
- Page: /datasets/vizgen-merscope-skin-of-body-ordue3igm3wj22dy0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 30,723
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("orduE3IGm3wJ22dy0000").to_sdata()`


<a id="mibi-tof-breast-uortrrhvpfjvyfbr0000"></a>
## Human breast

- uid: `UoRTrrHvpFJvyFbR0000`
- Page: /datasets/mibi-tof-breast-uortrrhvpfjvyfbr0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 678
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("UoRTrrHvpFJvyFbR0000").to_sdata()`


<a id="10x-xenium-brain-hiz3bth1bugpnk6r0000"></a>
## Human brain

- uid: `HIz3BTh1BUgPnK6R0000`
- Page: /datasets/10x-xenium-brain-hiz3bth1bugpnk6r0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (cells): 52,068
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260452
- Publication: https://doi.org/10.1038/s41586-026-10214-2
- Load: `Catalog().dataset("HIz3BTh1BUgPnK6R0000").to_sdata()`


<a id="10x-xenium-brain-urysmycxk2bnvgtx0000"></a>
## Human brain

- uid: `urYsMYCXK2bnvGTX0000`
- Page: /datasets/10x-xenium-brain-urysmycxk2bnvgtx0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (cells): 67,934
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260452
- Publication: https://doi.org/10.1038/s41586-026-10214-2
- Load: `Catalog().dataset("urYsMYCXK2bnvGTX0000").to_sdata()`


<a id="10x-xenium-hippocampal-formation-8fdrue718kh2hmdc0000"></a>
## Human hippocampal formation

- uid: `8fDrue718kH2hMdC0000`
- Page: /datasets/10x-xenium-hippocampal-formation-8fdrue718kh2hmdc0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: hippocampal formation
- Modality: RNA
- Observations (cells): 29,037
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335898
- Publication: https://doi.org/10.1016/j.cell.2026.07.007
- Load: `Catalog().dataset("8fDrue718kH2hMdC0000").to_sdata()`


<a id="mibi-tof-liver-py7uk0blbw2ioqf70000"></a>
## Human liver

- uid: `PY7uk0BlBW2IOQf70000`
- Page: /datasets/mibi-tof-liver-py7uk0blbw2ioqf70000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: liver
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 272
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("PY7uk0BlBW2IOQf70000").to_sdata()`


<a id="merfish-brain-lrgcyghbxxk1ruzi0000"></a>
## Mouse brain

- uid: `lRGcyghBXXk1rUZi0000`
- Page: /datasets/merfish-brain-lrgcyghbxxk1ruzi0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 25,534
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("lRGcyghBXXk1rUZi0000").to_sdata()`


<a id="merfish-brain-vplna4zeddpphjxd0000"></a>
## Mouse brain

- uid: `VplnA4zEDdppHJxD0000`
- Page: /datasets/merfish-brain-vplna4zeddpphjxd0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 28,827
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("VplnA4zEDdppHJxD0000").to_sdata()`