# SpatialData-DB datasets, shard bd

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-colon-vwuhmbina146mkdz0000"></a>
## Rat colon

- uid: `VWuhmbiNa146mkDZ0000`
- Page: /datasets/visium-spatial-gene-expression-colon-vwuhmbina146mkdz0000/
- Technology: Visium
- Organism: rat
- Tissue: colon
- Condition: adenocarcinoma
- Modality: RNA
- Observations (spots): 1,453
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211895
- Publication: https://doi.org/10.1016/j.crmeth.2022.100340
- Collections: [geo-gse211895](/collections/md/d.md#geo-gse211895)
- Load: `Catalog().dataset("VWuhmbiNa146mkDZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-syvq65vjpthfkdzx0000"></a>
## Human liver

- uid: `syVq65vJpTHfKDZX0000`
- Page: /datasets/visium-spatial-gene-expression-liver-syvq65vjpthfkdzx0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatoblastoma
- Modality: RNA
- Observations (spots): 4,983
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE261958
- Publication: https://doi.org/10.1016/j.jhep.2025.01.031
- Collections: [geo-gse261958](/collections/md/b.md#geo-gse261958)
- Load: `Catalog().dataset("syVq65vJpTHfKDZX0000").to_sdata()`


<a id="spatial-transcriptomics-breast-qpjn9wuflpkchl5h0000"></a>
## Human breast

- uid: `qPjN9wuFLpkCHl5h0000`
- Page: /datasets/spatial-transcriptomics-breast-qpjn9wuflpkchl5h0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 478
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aaf2403
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("qPjN9wuFLpkCHl5h0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-da5y3neil70r5xdx0000"></a>
## Human lung

- uid: `da5Y3NeIl70R5XDX0000`
- Page: /datasets/visium-spatial-gene-expression-lung-da5y3neil70r5xdx0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (spots): 1,928
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41588-022-01243-4
- Publication: https://doi.org/10.1038/s41588-022-01243-4
- Collections: [doi-10-1038-s41588-022-01243-4](/collections/md/9.md#doi-10-1038-s41588-022-01243-4)
- Load: `Catalog().dataset("da5Y3NeIl70R5XDX0000").to_sdata()`


<a id="visium-hd-jejunum-d6zkyysqou5yup4a0000"></a>
## Mouse jejunum

- uid: `D6ZkyYsqOu5Yup4a0000`
- Page: /datasets/visium-hd-jejunum-d6zkyysqou5yup4a0000/
- Technology: Visium HD
- Organism: mouse
- Tissue: jejunum
- Condition: radiation-induced disorder
- Modality: RNA
- Observations (bins): 433,274
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9134410
- Collections: [geo-gse303705-mouse-intestine-regeneration](/collections/md/c.md#geo-gse303705-mouse-intestine-regeneration)
- Load: `Catalog().dataset("D6ZkyYsqOu5Yup4a0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-saej7imxesoyf5860000"></a>
## Human ovary

- uid: `sAEJ7iMxeSoyf5860000`
- Page: /datasets/visium-spatial-gene-expression-ovary-saej7imxesoyf5860000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 1,534
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288483
- Publication: https://doi.org/10.1038/s41698-025-01122-1
- Collections: [geo-gse288483](/collections/md/e.md#geo-gse288483)
- Load: `Catalog().dataset("sAEJ7iMxeSoyf5860000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-q17q7ynfei5l3ntx0000"></a>
## Human breast

- uid: `q17q7yNfei5L3NtX0000`
- Page: /datasets/visium-spatial-gene-expression-breast-q17q7ynfei5l3ntx0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 1,258
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE213688
- Publication: https://doi.org/10.1016/j.labinv.2023.100258
- Collections: [geo-gse213688](/collections/md/5.md#geo-gse213688)
- Load: `Catalog().dataset("q17q7yNfei5L3NtX0000").to_sdata()`


<a id="visium-spatial-gene-expression-uterus-3ed7k7readrzefva0000"></a>
## Mouse uterus

- uid: `3eD7K7readrzefva0000`
- Page: /datasets/visium-spatial-gene-expression-uterus-3ed7k7readrzefva0000/
- Technology: Visium
- Organism: mouse
- Tissue: uterus
- Modality: RNA
- Observations (spots): 206
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269332
- Publication: https://doi.org/10.1002/path.6470
- Collections: [geo-gse269332](/collections/md/e.md#geo-gse269332)
- Load: `Catalog().dataset("3eD7K7readrzefva0000").to_sdata()`


<a id="visium-spatial-gene-expression-hippocampal-formation-lcramtczu6uhrloz0000"></a>
## Human hippocampal formation

- uid: `lcramtczu6UhrlOz0000`
- Page: /datasets/visium-spatial-gene-expression-hippocampal-formation-lcramtczu6uhrloz0000/
- Technology: Visium
- Organism: human
- Tissue: hippocampal formation
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE264692
- Collections: [geo-gse264692](/collections/md/2.md#geo-gse264692)
- Load: `Catalog().dataset("lcramtczu6UhrlOz0000").to_sdata()`


<a id="visium-spatial-gene-expression-artery-xy3auegshr10xm6e0000"></a>
## Human artery

- uid: `XY3AueGShr10xM6e0000`
- Page: /datasets/visium-spatial-gene-expression-artery-xy3auegshr10xm6e0000/
- Technology: Visium
- Organism: human
- Tissue: artery
- Condition: atherosclerosis
- Modality: RNA
- Observations (spots): 2,329
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274572
- Collections: [geo-gse274572](/collections/md/c.md#geo-gse274572)
- Load: `Catalog().dataset("XY3AueGShr10xM6e0000").to_sdata()`


<a id="10x-xenium-spinal-cord-no30qexkfnur0snl0000"></a>
## Mouse spinal cord

- uid: `No30QEXKfNUr0sNl0000`
- Page: /datasets/10x-xenium-spinal-cord-no30qexkfnur0snl0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: spinal cord
- Modality: RNA
- Observations (cells): 173,341
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9829815
- Collections: [geo-gse336196](/collections/md/3.md#geo-gse336196)
- Load: `Catalog().dataset("No30QEXKfNUr0sNl0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-xcov3mprsbk4etb50000"></a>
## Human liver

- uid: `xcoV3mPRSbK4etb50000`
- Page: /datasets/visium-spatial-gene-expression-liver-xcov3mprsbk4etb50000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 2,356
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE281759
- Publication: https://doi.org/10.1016/j.jhepr.2026.101790
- Collections: [geo-gse281759](/collections/md/3.md#geo-gse281759)
- Load: `Catalog().dataset("xcoV3mPRSbK4etb50000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-xkavgp4mcpmxxnri0000"></a>
## Human prostate gland

- uid: `XKaVgP4MCpmXXNrI0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-xkavgp4mcpmxxnri0000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 3,906
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("XKaVgP4MCpmXXNrI0000").to_sdata()`


<a id="10x-xenium-hypopharynx-3ryzw6sz28blctfg0000"></a>
## Human hypopharynx

- uid: `3RYzw6sZ28BlCTFG0000`
- Page: /datasets/10x-xenium-hypopharynx-3ryzw6sz28blctfg0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: hypopharynx
- Condition: hypopharynx squamous cell carcinoma
- Modality: RNA
- Observations (cells): 24,109
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300147
- Publication: https://doi.org/10.1126/sciimmunol.aec3133
- Load: `Catalog().dataset("3RYzw6sZ28BlCTFG0000").to_sdata()`


<a id="10x-xenium-brain-z5vc2zniw1gogqvs0000"></a>
## Human brain

- uid: `z5VC2zniw1goGqVs0000`
- Page: /datasets/10x-xenium-brain-z5vc2zniw1gogqvs0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (cells): 81,532
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE339006
- Load: `Catalog().dataset("z5VC2zniw1goGqVs0000").to_sdata()`


<a id="10x-xenium-oropharynx-x5emlkcbevtxsfzq0000"></a>
## Human oropharynx

- uid: `x5EMLKcBeVtxSFzQ0000`
- Page: /datasets/10x-xenium-oropharynx-x5emlkcbevtxsfzq0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: oropharynx
- Condition: oropharynx squamous cell carcinoma
- Modality: RNA
- Observations (cells): 29,743
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300147
- Publication: https://doi.org/10.1126/sciimmunol.aec3133
- Load: `Catalog().dataset("x5EMLKcBeVtxSFzQ0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-grvb7kxhsovug1am0000"></a>
## Human lung

- uid: `GRvB7KxhSOVUg1Am0000`
- Page: /datasets/visium-spatial-gene-expression-lung-grvb7kxhsovug1am0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,867
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8452851
- Collections: [geo-gse274557](/collections/md/1.md#geo-gse274557)
- Load: `Catalog().dataset("GRvB7KxhSOVUg1Am0000").to_sdata()`


<a id="10x-xenium-kidney-xacyibmejkya9zty0000"></a>
## Mouse kidney

- uid: `xAcYIBmeJkYa9ZtY0000`
- Page: /datasets/10x-xenium-kidney-xacyibmejkya9zty0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: kidney
- Modality: RNA
- Observations (cells): 320,131
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286051
- Load: `Catalog().dataset("xAcYIBmeJkYa9ZtY0000").to_sdata()`


<a id="10x-xenium-tongue-nurqkzb2yraadwyx0000"></a>
## Mouse tongue

- uid: `Nurqkzb2YrAaDWyx0000`
- Page: /datasets/10x-xenium-tongue-nurqkzb2yraadwyx0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: tongue
- Condition: head and neck squamous cell carcinoma
- Modality: RNA
- Observations (cells): 52,889
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302128
- Publication: https://doi.org/10.1038/s41416-025-03189-w
- Load: `Catalog().dataset("Nurqkzb2YrAaDWyx0000").to_sdata()`


<a id="visium-spatial-gene-expression-cornea-qfggj00pcsnzosl20000"></a>
## Human cornea

- uid: `qfGgJ00PcsnzoSl20000`
- Page: /datasets/visium-spatial-gene-expression-cornea-qfggj00pcsnzosl20000/
- Technology: Visium
- Organism: human
- Tissue: cornea
- Condition: keratoconus
- Modality: RNA
- Observations (spots): 1,226
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE303036
- Publication: https://doi.org/10.1167/iovs.67.4.7
- Collections: [geo-gse303036](/collections/md/b.md#geo-gse303036)
- Load: `Catalog().dataset("qfGgJ00PcsnzoSl20000").to_sdata()`


<a id="10x-xenium-bone-element-tor6hbn5pbwwrzeu0000"></a>
## Mouse bone element

- uid: `toR6hbN5PBWwRZeU0000`
- Page: /datasets/10x-xenium-bone-element-tor6hbn5pbwwrzeu0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: bone element
- Condition: melanoma
- Modality: RNA
- Observations (cells): 77,166
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329415
- Collections: [geo-gse329415](/collections/md/4.md#geo-gse329415)
- Load: `Catalog().dataset("toR6hbN5PBWwRZeU0000").to_sdata()`


<a id="visium-spatial-gene-expression-lymph-node-wylo2x32aztw8unu0000"></a>
## Human lymph node

- uid: `WylO2X32Aztw8UNu0000`
- Page: /datasets/visium-spatial-gene-expression-lymph-node-wylo2x32aztw8unu0000/
- Technology: Visium
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE276542
- Publication: https://doi.org/10.1080/2162402X.2026.2660418
- Collections: [geo-gse276542](/collections/md/2.md#geo-gse276542)
- Load: `Catalog().dataset("WylO2X32Aztw8UNu0000").to_sdata()`


<a id="merfish-brain-a1vebwc4kkhaimtu0000"></a>
## Mouse brain

- uid: `a1VebwC4KKHaimTU0000`
- Page: /datasets/merfish-brain-a1vebwc4kkhaimtu0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 14,388
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("a1VebwC4KKHaimTU0000").to_sdata()`


<a id="mibi-tof-breast-vjwwuoafdpfbewww0000"></a>
## Human breast

- uid: `vjWWUOafDpFbeWWW0000`
- Page: /datasets/mibi-tof-breast-vjwwuoafdpfbewww0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,131
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("vjWWUOafDpFbeWWW0000").to_sdata()`


<a id="vizgen-merscope-brain-aldirnlbnqesyr5k0000"></a>
## Mouse brain

- uid: `ALdIrnlBnqEsyR5k0000`
- Page: /datasets/vizgen-merscope-brain-aldirnlbnqesyr5k0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 9,973
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("ALdIrnlBnqEsyR5k0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-lung-xsnylrybb1ppdr5b0000"></a>
## Human lung

- uid: `xsnyLrYBB1pPdr5B0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-lung-xsnylrybb1ppdr5b0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: lung
- Modality: Metabolomics
- Observations: 4,895
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2020-07-10_22h06m25s
- Load: `Catalog().dataset("xsnyLrYBB1pPdr5B0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-2poy3z9azmgicbs00000"></a>
## Human lymph node

- uid: `2POY3Z9azMgiCBS00000`
- Page: /datasets/phenocycler-fusion-lymph-node-2poy3z9azmgicbs00000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: marginal zone lymphoma
- Modality: protein
- Observations (cells): 6,721
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("2POY3Z9azMgiCBS00000").to_sdata()`


<a id="mibi-tof-skin-of-body-k4gyffydzlfvxvqk0000"></a>
## Human skin of body

- uid: `k4GYFfydZLfVxvQk0000`
- Page: /datasets/mibi-tof-skin-of-body-k4gyffydzlfvxvqk0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: skin of body
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,797
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("k4GYFfydZLfVxvQk0000").to_sdata()`


<a id="10x-xenium-dorsolateral-prefrontal-cortex-gl7qqn0vdup85ecq0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `Gl7QqN0vdup85eCQ0000`
- Page: /datasets/10x-xenium-dorsolateral-prefrontal-cortex-gl7qqn0vdup85ecq0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (cells): 67,472
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307404
- Load: `Catalog().dataset("Gl7QqN0vdup85eCQ0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-jvbaymdjehwhar4r0000"></a>
## Human kidney

- uid: `JVbaYMdjeHWhaR4R0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-jvbaymdjehwhar4r0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 44,943
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2020-12-04_19h16m17s
- Load: `Catalog().dataset("JVbaYMdjeHWhaR4R0000").to_sdata()`


<a id="mibi-tof-liver-8qc97sruggvamb7k0000"></a>
## Human liver

- uid: `8qc97srUGgVamb7k0000`
- Page: /datasets/mibi-tof-liver-8qc97sruggvamb7k0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: liver
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 766
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("8qc97srUGgVamb7k0000").to_sdata()`


<a id="merfish-brain-zzucuek2wndyqqno0000"></a>
## Mouse brain

- uid: `ZzUcuEK2wnDYQQNo0000`
- Page: /datasets/merfish-brain-zzucuek2wndyqqno0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 23,473
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("ZzUcuEK2wnDYQQNo0000").to_sdata()`