# SpatialData-DB datasets, shard bb

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="spatial-transcriptomics-skin-of-body-rjtjbjkluytqd4px0000"></a>
## Human skin of body

- uid: `RjTJbJKlUytqd4Px0000`
- Page: /datasets/spatial-transcriptomics-skin-of-body-rjtjbjkluytqd4px0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: skin of body
- Condition: skin squamous cell carcinoma
- Modality: RNA
- Observations (spots): 646
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7391009/
- Publication: https://doi.org/10.1016/j.cell.2020.05.039
- Collections: [doi-10-1016-j-cell-2020-05-039](/collections/md/0.md#doi-10-1016-j-cell-2020-05-039)
- Load: `Catalog().dataset("RjTJbJKlUytqd4Px0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-9whoqs0u7v77dmdp0000"></a>
## Mouse spinal cord

- uid: `9WHoQs0U7v77DmdP0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-9whoqs0u7v77dmdp0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 262
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("9WHoQs0U7v77DmdP0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-4lf7nx5eqbis23yh0000"></a>
## Mouse brain

- uid: `4LF7Nx5EQBiS23yh0000`
- Page: /datasets/visium-spatial-gene-expression-brain-4lf7nx5eqbis23yh0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,427
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE182127
- Publication: https://doi.org/10.1016/j.freeradbiomed.2021.11.011
- Collections: [geo-gse182127](/collections/md/9.md#geo-gse182127)
- Load: `Catalog().dataset("4LF7Nx5EQBiS23yh0000").to_sdata()`


<a id="visium-hd-medial-amygdaloid-nucleus-qcdnhuijzokr9wb10000"></a>
## Human medial amygdaloid nucleus

- uid: `qcdNHuIjzOkr9WB10000`
- Page: /datasets/visium-hd-medial-amygdaloid-nucleus-qcdnhuijzokr9wb10000/
- Technology: Visium HD
- Organism: human
- Tissue: medial amygdaloid nucleus
- Modality: RNA
- Observations (bins): 702,244
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9937428
- Collections: [geo-gse342738](/collections/md/8.md#geo-gse342738)
- Load: `Catalog().dataset("qcdNHuIjzOkr9WB10000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-uo4xkon0hx1its4u0000"></a>
## Mouse intestine

- uid: `Uo4XKon0hX1iTS4U0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-uo4xkon0hx1its4u0000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 3,431
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
- Publication: https://doi.org/10.1038/s41586-024-08216-z
- Collections: [geo-gse245274](/collections/md/1.md#geo-gse245274)
- Load: `Catalog().dataset("Uo4XKon0hX1iTS4U0000").to_sdata()`


<a id="vizgen-merscope-liver-zejy9d76sqtmicts0000"></a>
## Mouse liver

- uid: `zeJY9d76sQTmICTS0000`
- Page: /datasets/vizgen-merscope-liver-zejy9d76sqtmicts0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (cells): 163,186
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313704
- Collections: [geo-gse313704](/collections/md/9.md#geo-gse313704)
- Load: `Catalog().dataset("zeJY9d76sQTmICTS0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-qase9v0nimnqkxcm0000"></a>
## Mouse brain

- uid: `qaSE9v0NimNqKXcm0000`
- Page: /datasets/visium-spatial-gene-expression-brain-qase9v0nimnqkxcm0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: Alzheimer disease
- Modality: RNA
- Observations (spots): 3,047
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE270389
- Publication: https://doi.org/10.1523/ENEURO.0260-24.2024
- Collections: [geo-gse270382](/collections/md/b.md#geo-gse270382)
- Load: `Catalog().dataset("qaSE9v0NimNqKXcm0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-ffypalitqlamavw60000"></a>
## Human lung

- uid: `FFypaLItQlamAVW60000`
- Page: /datasets/visium-spatial-gene-expression-lung-ffypalitqlamavw60000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: obsolete idiopathic pulmonary fibrosis
- Modality: RNA
- Observations (spots): 4,235
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE248082
- Publication: https://doi.org/10.1183/13993003.01114-2024
- Collections: [geo-gse248082](/collections/md/3.md#geo-gse248082)
- Load: `Catalog().dataset("FFypaLItQlamAVW60000").to_sdata()`


<a id="spatial-cut-tag-brain-mvj6wuvvkakcfzs00000"></a>
## Mouse brain

- uid: `Mvj6WuVVkAkcFZS00000`
- Page: /datasets/spatial-cut-tag-brain-mvj6wuvvkakcfzs00000/
- Technology: spatial CUT&Tag
- Organism: mouse
- Tissue: brain
- Modality: Epigenomics
- Observations: 2,499
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE218593
- Publication: https://doi.org/10.1038/s41586-023-05795-1
- Collections: [geo-gse218593](/collections/md/a.md#geo-gse218593)
- Load: `Catalog().dataset("Mvj6WuVVkAkcFZS00000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-eubj6rgjyraro2en0000"></a>
## Human skin of body

- uid: `eUBJ6rGJyraRO2eN0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-eubj6rgjyraro2en0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous leishmaniasis
- Modality: RNA
- Observations (spots): 1,973
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8189302
- Collections: [geo-gse263298](/collections/md/5.md#geo-gse263298)
- Load: `Catalog().dataset("eUBJ6rGJyraRO2eN0000").to_sdata()`


<a id="visium-spatial-gene-expression-thymus-npikgdkjbqerfm5s0000"></a>
## Mouse thymus

- uid: `nPikgDKjBQErFm5S0000`
- Page: /datasets/visium-spatial-gene-expression-thymus-npikgdkjbqerfm5s0000/
- Technology: Visium
- Organism: mouse
- Tissue: thymus
- Modality: RNA
- Observations (spots): 1,613
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7823013
- Collections: [geo-gse244641](/collections/md/f.md#geo-gse244641)
- Load: `Catalog().dataset("nPikgDKjBQErFm5S0000").to_sdata()`


<a id="10x-xenium-kidney-nkg8vowpvpqmnooj0000"></a>
## Mouse kidney

- uid: `nkg8VOWpvpqmnOOJ0000`
- Page: /datasets/10x-xenium-kidney-nkg8vowpvpqmnooj0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: kidney
- Modality: RNA
- Observations (cells): 421,140
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286051
- Load: `Catalog().dataset("nkg8VOWpvpqmnOOJ0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-w2xbjuuynxbxgvgb0000"></a>
## Mouse heart

- uid: `W2XbJUuYnxbxGvGB0000`
- Page: /datasets/visium-spatial-gene-expression-heart-w2xbjuuynxbxgvgb0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Condition: myocardial infarction
- Modality: RNA
- Observations (spots): 2,578
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6613083
- Collections: [geo-gse214611](/collections/md/a.md#geo-gse214611)
- Load: `Catalog().dataset("W2XbJUuYnxbxGvGB0000").to_sdata()`


<a id="10x-xenium-mammary-gland-oduciabvxwhugcih0000"></a>
## Mouse mammary gland

- uid: `odUciaBVxwhUgCiH0000`
- Page: /datasets/10x-xenium-mammary-gland-oduciabvxwhugcih0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: mammary gland
- Condition: breast cancer
- Modality: RNA
- Observations (cells): 1,216,979
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316800
- Load: `Catalog().dataset("odUciaBVxwhUgCiH0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-left-ventricle-qkzwmcz0svy5rdaj0000"></a>
## Rat heart left ventricle

- uid: `QKzWmcz0svy5RDAJ0000`
- Page: /datasets/visium-spatial-gene-expression-heart-left-ventricle-qkzwmcz0svy5rdaj0000/
- Technology: Visium
- Organism: rat
- Tissue: heart left ventricle
- Condition: myocardial infarction
- Modality: RNA
- Observations (spots): 3,923
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8169579
- Collections: [geo-gse262430](/collections/md/7.md#geo-gse262430)
- Load: `Catalog().dataset("QKzWmcz0svy5RDAJ0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-im6gaccipqdtq6nv0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `Im6gAcCiPQdtQ6Nv0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-im6gaccipqdtq6nv0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("Im6gAcCiPQdtQ6Nv0000").to_sdata()`


<a id="10x-xenium-ascending-aorta-rorfut8gqomjlx2r0000"></a>
## Human ascending aorta

- uid: `ROrfUT8gQOmJlx2r0000`
- Page: /datasets/10x-xenium-ascending-aorta-rorfut8gqomjlx2r0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: ascending aorta
- Condition: IgG4-related disease
- Modality: RNA
- Observations (cells): 59,298
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306150
- Publication: https://doi.org/10.1172/jci.insight.200255
- Collections: [geo-gse306150](/collections/md/6.md#geo-gse306150)
- Load: `Catalog().dataset("ROrfUT8gQOmJlx2r0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-kpgwrznpnjrxm3x10000"></a>
## Mouse prostate gland

- uid: `kPgwRzNPnjrXm3x10000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-kpgwrznpnjrxm3x10000/
- Technology: Visium
- Organism: mouse
- Tissue: prostate gland
- Modality: RNA
- Observations (spots): 2,558
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295043
- Publication: https://doi.org/10.1016/j.neo.2025.101230
- Collections: [geo-gse295043](/collections/md/d.md#geo-gse295043)
- Load: `Catalog().dataset("kPgwRzNPnjrXm3x10000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-l4gygkgf3cvwnkn60000"></a>
## Human colon

- uid: `l4gygKGF3CVWnkN60000`
- Page: /datasets/visium-spatial-gene-expression-colon-l4gygkgf3cvwnkn60000/
- Technology: Visium
- Organism: human
- Tissue: colon
- Condition: colorectal carcinoma
- Modality: RNA
- Observations (spots): 4,564
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294
- Collections: [geo-gse311294](/collections/md/b.md#geo-gse311294)
- Load: `Catalog().dataset("l4gygKGF3CVWnkN60000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-n0dlfbgj5pepkooe0000"></a>
## Human kidney

- uid: `N0dlfBgj5PEPKooE0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-n0dlfbgj5pepkooe0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 10,780
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2018-11-17_01h32m59s
- Load: `Catalog().dataset("N0dlfBgj5PEPKooE0000").to_sdata()`


<a id="mibi-tof-breast-stkpoudyafisy5ty0000"></a>
## Human breast

- uid: `stkPOUDyafIsY5tY0000`
- Page: /datasets/mibi-tof-breast-stkpoudyafisy5ty0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 906
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("stkPOUDyafIsY5tY0000").to_sdata()`


<a id="vizgen-merscope-brain-b8dxaqjzl12lmu2n0000"></a>
## Mouse brain

- uid: `B8DXaqjZL12LMu2n0000`
- Page: /datasets/vizgen-merscope-brain-b8dxaqjzl12lmu2n0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 108,533
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298591
- Publication: https://doi.org/10.1038/s41467-025-62114-0
- Load: `Catalog().dataset("B8DXaqjZL12LMu2n0000").to_sdata()`


<a id="merfish-brain-85kvh9nrtnm8kqzz0000"></a>
## Mouse brain

- uid: `85Kvh9nRTnm8kQZz0000`
- Page: /datasets/merfish-brain-85kvh9nrtnm8kqzz0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 14,630
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("85Kvh9nRTnm8kQZz0000").to_sdata()`


<a id="vizgen-merscope-brain-ze0nsffld586tdqd0000"></a>
## Mouse brain

- uid: `zE0nSFflD586tDqD0000`
- Page: /datasets/vizgen-merscope-brain-ze0nsffld586tdqd0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 51,972
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("zE0nSFflD586tDqD0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-lmyoqx1kjmczjs2c0000"></a>
## Human kidney

- uid: `LmyOqx1KJMCZJS2c0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-lmyoqx1kjmczjs2c0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 54,740
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-09-12_19h53m18s
- Load: `Catalog().dataset("LmyOqx1KJMCZJS2c0000").to_sdata()`


<a id="stereo-seq-uterus-8b528xjhan2cvmdq0000"></a>
## Mouse uterus

- uid: `8b528xjHAn2cVMDq0000`
- Page: /datasets/stereo-seq-uterus-8b528xjhan2cvmdq0000/
- Technology: Stereo-seq
- Organism: mouse
- Tissue: uterus
- Modality: RNA
- Observations: 12,941
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333479
- Collections: [geo-gse333479](/collections/md/4.md#geo-gse333479)
- Load: `Catalog().dataset("8b528xjHAn2cVMDq0000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-clhamnnhcegywcpr0000"></a>
## Human skin of body

- uid: `CLHaMNNhCEgYWcPr0000`
- Page: /datasets/vizgen-merscope-skin-of-body-clhamnnhcegywcpr0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 132,207
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("CLHaMNNhCEgYWcPr0000").to_sdata()`


<a id="mibi-tof-breast-68emka2yh22yfi5p0000"></a>
## Human breast

- uid: `68EMka2yH22YfI5p0000`
- Page: /datasets/mibi-tof-breast-68emka2yh22yfi5p0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,817
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("68EMka2yH22YfI5p0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-dgdnj1hnxmkqudqw0000"></a>
## Human lymph node

- uid: `DGdnJ1hnXmKquDQW0000`
- Page: /datasets/phenocycler-fusion-lymph-node-dgdnj1hnxmkqudqw0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: Burkitt lymphoma
- Modality: protein
- Observations (cells): 3,157
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("DGdnJ1hnXmKquDQW0000").to_sdata()`


<a id="10x-xenium-pancreas-7pf0es2b8g5lntkr0000"></a>
## Mouse pancreas

- uid: `7pf0eS2B8g5LntKR0000`
- Page: /datasets/10x-xenium-pancreas-7pf0es2b8g5lntkr0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: pancreas
- Modality: RNA
- Observations (cells): 587,225
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE315243
- Publication: https://doi.org/10.1016/j.cell.2026.03.032
- Load: `Catalog().dataset("7pf0eS2B8g5LntKR0000").to_sdata()`


<a id="merfish-brain-2dodaahdnljdanph0000"></a>
## Mouse brain

- uid: `2DoDAahdNlJDaNph0000`
- Page: /datasets/merfish-brain-2dodaahdnljdanph0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 30,439
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("2DoDAahdNlJDaNph0000").to_sdata()`