# SpatialData-DB datasets, shard ba

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-breast-curhqcxdhkucdjdt0000"></a>
## Human breast

- uid: `CURhQcXdhKUcDJDt0000`
- Page: /datasets/visium-spatial-gene-expression-breast-curhqcxdhkucdjdt0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 4,955
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE268427
- Publication: https://doi.org/10.1038/s42003-024-07043-2
- Collections: [geo-gse268427](/collections/md/c.md#geo-gse268427)
- Load: `Catalog().dataset("CURhQcXdhKUcDJDt0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-yzukuyf5pakdbe9z0000"></a>
## Mouse spinal cord

- uid: `yZuKUyF5paKDBE9z0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-yzukuyf5pakdbe9z0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 235
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("yZuKUyF5paKDBE9z0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-mizxg1w8wzoku5qt0000"></a>
## Human lung

- uid: `MiZXG1W8WzoKu5qT0000`
- Page: /datasets/visium-spatial-gene-expression-lung-mizxg1w8wzoku5qt0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (spots): 1,508
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-36071-5
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [doi-10-1038-s41467-023-36071-5](/collections/md/9.md#doi-10-1038-s41467-023-36071-5)
- Load: `Catalog().dataset("MiZXG1W8WzoKu5qT0000").to_sdata()`


<a id="10x-xenium-brain-t9q8m47lh79elptl0000"></a>
## Mouse brain

- uid: `T9Q8m47Lh79ELPtl0000`
- Page: /datasets/10x-xenium-brain-t9q8m47lh79elptl0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 60,038
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9489188
- Publication: https://doi.org/10.1016/j.stemcr.2026.102967
- Collections: [geo-gse318202](/collections/md/3.md#geo-gse318202)
- Load: `Catalog().dataset("T9Q8m47Lh79ELPtl0000").to_sdata()`


<a id="10x-xenium-brain-yajsbgrgznvfde8e0000"></a>
## Mouse brain

- uid: `YAJsBgRgzNVfdE8e0000`
- Page: /datasets/10x-xenium-brain-yajsbgrgznvfde8e0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 139,480
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8647398
- Publication: https://doi.org/10.1016/j.celrep.2024.115194
- Collections: [geo-gse266689](/collections/md/6.md#geo-gse266689)
- Load: `Catalog().dataset("YAJsBgRgzNVfdE8e0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-yqytzzaaqqc2m3oe0000"></a>
## Human brain

- uid: `YqYtzzAAqQC2m3OE0000`
- Page: /datasets/visium-spatial-gene-expression-brain-yqytzzaaqqc2m3oe0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 1,387
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE237183
- Publication: https://doi.org/10.1016/j.cell.2024.03.029
- Collections: [geo-gse237183](/collections/md/d.md#geo-gse237183)
- Load: `Catalog().dataset("YqYtzzAAqQC2m3OE0000").to_sdata()`


<a id="visium-spatial-gene-expression-tendon-z4tlqu2w20yzyety0000"></a>
## Mouse tendon

- uid: `Z4TlqU2W20YZyeTy0000`
- Page: /datasets/visium-spatial-gene-expression-tendon-z4tlqu2w20yzyety0000/
- Technology: Visium
- Organism: mouse
- Tissue: tendon
- Modality: RNA
- Observations (spots): 875
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216214
- Publication: https://doi.org/10.1016/j.celrep.2022.111706
- Collections: [geo-gse216214](/collections/md/c.md#geo-gse216214)
- Load: `Catalog().dataset("Z4TlqU2W20YZyeTy0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-jsix1h6klhyqls9w0000"></a>
## Human prostate gland

- uid: `jsIX1H6KLhyQLS9w0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-jsix1h6klhyqls9w0000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 4,517
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("jsIX1H6KLhyQLS9w0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-7kow8jiozr2hacwz0000"></a>
## Human basal ganglion

- uid: `7kOw8jioZR2hacWZ0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-7kow8jiozr2hacwz0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 51,898
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("7kOw8jioZR2hacWZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-oervnmy8djjs6zp10000"></a>
## Human pancreas

- uid: `oerVnmY8DJjs6ZP10000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-oervnmy8djjs6zp10000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,889
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294669
- Publication: https://doi.org/10.1172/jci.insight.191595
- Collections: [geo-gse294669](/collections/md/e.md#geo-gse294669)
- Load: `Catalog().dataset("oerVnmY8DJjs6ZP10000").to_sdata()`


<a id="visium-spatial-gene-expression-cortex-of-kidney-qdcpkrvyqxawitwu0001"></a>
## Human cortex of kidney

- uid: `QDCPKrVyQXAwITWU0001`
- Page: /datasets/visium-spatial-gene-expression-cortex-of-kidney-qdcpkrvyqxawitwu0001/
- Technology: Visium
- Organism: human
- Tissue: cortex of kidney
- Condition: anti-neutrophil cytoplasmic antibody-associated vasculitis
- Modality: RNA
- Observations (spots): 892
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302677
- Publication: https://doi.org/10.3389/fimmu.2026.1884100
- Collections: [geo-gse302677](/collections/md/8.md#geo-gse302677)
- Load: `Catalog().dataset("QDCPKrVyQXAwITWU0001").to_sdata()`


<a id="visium-spatial-gene-expression-liver-4aetpjbetlkq5fnz0000"></a>
## Human liver

- uid: `4aeTpJBEtlkq5fnz0000`
- Page: /datasets/visium-spatial-gene-expression-liver-4aetpjbetlkq5fnz0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatoblastoma
- Modality: RNA
- Observations (spots): 3,333
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283207
- Publication: https://doi.org/10.1016/j.jhep.2025.01.031
- Collections: [geo-gse261958](/collections/md/b.md#geo-gse261958)
- Load: `Catalog().dataset("4aeTpJBEtlkq5fnz0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-cqudwo3x2zdrklof0000"></a>
## Human pancreas

- uid: `CQudwo3X2zDrKlOf0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-cqudwo3x2zdrklof0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 4,952
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8443453
- Collections: [geo-gse274103](/collections/md/e.md#geo-gse274103)
- Load: `Catalog().dataset("CQudwo3X2zDrKlOf0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-5i7lekzbuxsgxlul0000"></a>
## Human pancreas

- uid: `5I7LekzBUxSGXluL0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-5i7lekzbuxsgxlul0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 3,156
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("5I7LekzBUxSGXluL0000").to_sdata()`


<a id="10x-xenium-synovial-membrane-of-synovial-joint-fyxqijll2jeusxvv0000"></a>
## Human synovial membrane of synovial joint

- uid: `FYXqijLl2jEusxVV0000`
- Page: /datasets/10x-xenium-synovial-membrane-of-synovial-joint-fyxqijll2jeusxvv0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: synovial membrane of synovial joint
- Condition: juvenile idiopathic arthritis
- Modality: RNA
- Observations (cells): 37,295
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE338671
- Load: `Catalog().dataset("FYXqijLl2jEusxVV0000").to_sdata()`


<a id="10x-xenium-lymph-node-muzzool1uo9cdjce0000"></a>
## Human lymph node

- uid: `mUzzoOl1Uo9cdjCe0000`
- Page: /datasets/10x-xenium-lymph-node-muzzool1uo9cdjce0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (cells): 114,695
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328422
- Load: `Catalog().dataset("mUzzoOl1Uo9cdjCe0000").to_sdata()`


<a id="visium-spatial-gene-expression-perianal-skin-matnd2vnubwueeur0000"></a>
## Human perianal skin

- uid: `mATND2vnUbwUeEur0000`
- Page: /datasets/visium-spatial-gene-expression-perianal-skin-matnd2vnubwueeur0000/
- Technology: Visium
- Organism: human
- Tissue: perianal skin
- Condition: Crohn disease
- Modality: RNA
- Observations (spots): 1,376
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8521499
- Collections: [geo-gse277387](/collections/md/8.md#geo-gse277387)
- Load: `Catalog().dataset("mATND2vnUbwUeEur0000").to_sdata()`


<a id="visium-hd-ovary-1rob6hx6yhbwzd2z0000"></a>
## Mouse ovary

- uid: `1rob6hX6yhbwZd2Z0000`
- Page: /datasets/visium-hd-ovary-1rob6hx6yhbwzd2z0000/
- Technology: Visium HD
- Organism: mouse
- Tissue: ovary
- Modality: RNA
- Observations (bins): 225,104
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9229330
- Collections: [geo-gse307688](/collections/md/6.md#geo-gse307688)
- Load: `Catalog().dataset("1rob6hX6yhbwZd2Z0000").to_sdata()`


<a id="visium-spatial-gene-expression-amygdala-5xq7vjsgkdgumm060000"></a>
## Human amygdala

- uid: `5Xq7vjSgKdGuMm060000`
- Page: /datasets/visium-spatial-gene-expression-amygdala-5xq7vjsgkdgumm060000/
- Technology: Visium
- Organism: human
- Tissue: amygdala
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Collections: [geo-gse342709](/collections/md/a.md#geo-gse342709)
- Load: `Catalog().dataset("5Xq7vjSgKdGuMm060000").to_sdata()`


<a id="visium-spatial-gene-expression-brainstem-s6c6wextobk7udch0000"></a>
## Rat brainstem

- uid: `S6c6WeXtObk7UdCH0000`
- Page: /datasets/visium-spatial-gene-expression-brainstem-s6c6wextobk7udch0000/
- Technology: Visium
- Organism: rat
- Tissue: brainstem
- Modality: RNA
- Observations (spots): 2,291
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260847
- Publication: https://doi.org/10.1016/j.isci.2024.110549
- Collections: [geo-gse260847](/collections/md/4.md#geo-gse260847)
- Load: `Catalog().dataset("S6c6WeXtObk7UdCH0000").to_sdata()`


<a id="10x-xenium-kidney-nhyd5dfysygnrkdu0000"></a>
## Human kidney

- uid: `NHyd5DFysygNrkdu0000`
- Page: /datasets/10x-xenium-kidney-nhyd5dfysygnrkdu0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Condition: diabetic kidney disease
- Modality: RNA
- Observations (cells): 13,907
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286186
- Collections: [geo-gse286184](/collections/md/4.md#geo-gse286184)
- Load: `Catalog().dataset("NHyd5DFysygNrkdu0000").to_sdata()`


<a id="merfish-brain-wn0ylzfqtzfqgpla0000"></a>
## Mouse brain

- uid: `Wn0yLzFqtzFqGplA0000`
- Page: /datasets/merfish-brain-wn0ylzfqtzfqgpla0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 19,805
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("Wn0yLzFqtzFqGplA0000").to_sdata()`


<a id="vizgen-merscope-brain-fhuwgm2ickhro7hb0000"></a>
## Mouse brain

- uid: `fhuWgM2iCkHrO7hB0000`
- Page: /datasets/vizgen-merscope-brain-fhuwgm2ickhro7hb0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 12,330
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("fhuWgM2iCkHrO7hB0000").to_sdata()`


<a id="vizgen-merscope-brain-nxxs0z1osa0ta7pl0000"></a>
## Mouse brain

- uid: `NxxS0Z1OSA0TA7Pl0000`
- Page: /datasets/vizgen-merscope-brain-nxxs0z1osa0ta7pl0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 7,070
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("NxxS0Z1OSA0TA7Pl0000").to_sdata()`


<a id="mibi-tof-breast-jmpr1tpyg2tjvqtc0000"></a>
## Human breast

- uid: `jMpR1tPyG2TJVqTC0000`
- Page: /datasets/mibi-tof-breast-jmpr1tpyg2tjvqtc0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 6,105
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("jMpR1tPyG2TJVqTC0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-3wkgwwegslqp7k8q0000"></a>
## Macaque basal ganglion

- uid: `3WKGWwEgsLqP7K8Q0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-3wkgwwegslqp7k8q0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 61,301
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("3WKGWwEgsLqP7K8Q0000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-kmfldtylve8jjrmv0000"></a>
## Human skin of body

- uid: `KMfLDTyLvE8JjRMv0000`
- Page: /datasets/vizgen-merscope-skin-of-body-kmfldtylve8jjrmv0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 11,308
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("KMfLDTyLvE8JjRMv0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-hsff1fnxfywtnqxa0000"></a>
## Human lymph node

- uid: `HsFf1FNXfYwtNqxa0000`
- Page: /datasets/phenocycler-fusion-lymph-node-hsff1fnxfywtnqxa0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 19,523
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("HsFf1FNXfYwtNqxa0000").to_sdata()`


<a id="mibi-tof-unknown-xg96jb5pdfphuat70000"></a>
## Human unknown

- uid: `XG96JB5pDfPHuAT70000`
- Page: /datasets/mibi-tof-unknown-xg96jb5pdfphuat70000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: unknown
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 194
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("XG96JB5pDfPHuAT70000").to_sdata()`


<a id="vizgen-merscope-brain-utl1uj3zjxnzponn0000"></a>
## Mouse brain

- uid: `uTl1UJ3ZjXnzpONn0000`
- Page: /datasets/vizgen-merscope-brain-utl1uj3zjxnzponn0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 235,509
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269617
- Load: `Catalog().dataset("uTl1UJ3ZjXnzpONn0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-9aeohyrxz0wizz1a0000"></a>
## Human kidney

- uid: `9aEOHyrXZ0WizZ1a0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-9aeohyrxz0wizz1a0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 4,880
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-06-15_19h36m19s
- Load: `Catalog().dataset("9aEOHyrXZ0WizZ1a0000").to_sdata()`