# SpatialData-DB datasets, shard b7

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-skin-of-body-dw1m7gzivn6c1cmz0000"></a>
## Human skin of body

- uid: `dW1m7GzIvN6c1cmz0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-dw1m7gzivn6c1cmz0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: melanoma
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE238004
- Publication: https://doi.org/10.1016/j.crmeth.2024.100759
- Collections: [geo-gse238004](/collections/md/a.md#geo-gse238004)
- Load: `Catalog().dataset("dW1m7GzIvN6c1cmz0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-wcbbcqiejpqfylrz0000"></a>
## Mouse colon

- uid: `wCBBCQIeJPQFyLrz0000`
- Page: /datasets/visium-spatial-gene-expression-colon-wcbbcqiejpqfylrz0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colitis
- Modality: RNA
- Observations (spots): 2,308
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334067
- Publication: https://doi.org/10.1038/s41588-026-02673-0
- Collections: [geo-gse334067](/collections/md/b.md#geo-gse334067)
- Load: `Catalog().dataset("wCBBCQIeJPQFyLrz0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-huwdxbaugd0exedw0000"></a>
## Mouse colon

- uid: `HUwDXbaugD0ExeDw0000`
- Page: /datasets/visium-spatial-gene-expression-colon-huwdxbaugd0exedw0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: adenocarcinoma
- Modality: RNA
- Observations (spots): 1,469
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211895
- Publication: https://doi.org/10.1016/j.crmeth.2022.100340
- Collections: [geo-gse211895](/collections/md/d.md#geo-gse211895)
- Load: `Catalog().dataset("HUwDXbaugD0ExeDw0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-agjftf27s6aacb760000"></a>
## Mouse pancreas

- uid: `agJFtF27S6aAcB760000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-agjftf27s6aacb760000/
- Technology: Visium
- Organism: mouse
- Tissue: pancreas
- Condition: malignant pancreatic neoplasm
- Modality: RNA
- Observations (spots): 2,673
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE279507
- Collections: [geo-gse279507](/collections/md/d.md#geo-gse279507)
- Load: `Catalog().dataset("agJFtF27S6aAcB760000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-pcsgu4flsqjokfxl0000"></a>
## Mouse brain

- uid: `Pcsgu4flSQJOKFxL0000`
- Page: /datasets/visium-spatial-gene-expression-brain-pcsgu4flsqjokfxl0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 1,448
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.biorxiv.org/content/10.1101/2022.10.25.513696v1.full
- Publication: https://doi.org/10.1101/2022.10.25.513696
- Collections: [doi-10-1101-2022-10-25-513696](/collections/md/4.md#doi-10-1101-2022-10-25-513696)
- Load: `Catalog().dataset("Pcsgu4flSQJOKFxL0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-yp9fd7ozc0c49vgs0000"></a>
## Human kidney

- uid: `yP9Fd7OzC0C49Vgs0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-yp9fd7ozc0c49vgs0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: clear cell renal carcinoma
- Modality: RNA
- Observations (spots): 2,007
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/35231421/
- Publication: https://doi.org/10.1016/j.immuni.2022.02.001
- Collections: [doi-10-1016-j-immuni-2022-02-001](/collections/md/d.md#doi-10-1016-j-immuni-2022-02-001)
- Load: `Catalog().dataset("yP9Fd7OzC0C49Vgs0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-3oyhct3c7bdpebxc0000"></a>
## Human skin of body

- uid: `3oyhCT3C7bDpeBxC0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-3oyhct3c7bdpebxc0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: lichen planus
- Modality: RNA
- Observations (spots): 666
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("3oyhCT3C7bDpeBxC0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-kee4iitryd5siypk0000"></a>
## Human kidney

- uid: `kee4iItrYd5siyPk0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-kee4iitryd5siypk0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: diabetic kidney disease
- Modality: RNA
- Observations (spots): 673
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10356613/
- Publication: https://doi.org/10.1038/s41586-023-05769-3
- Collections: [doi-10-1038-s41586-023-05769-3](/collections/md/e.md#doi-10-1038-s41586-023-05769-3)
- Load: `Catalog().dataset("kee4iItrYd5siyPk0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-ajsldvfphawocifw0000"></a>
## Human breast

- uid: `AjsLDvfPhaWocifW0000`
- Page: /datasets/visium-spatial-gene-expression-breast-ajsldvfphawocifw0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 2,088
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210616
- Publication: https://doi.org/10.1158/0008-5472.CAN-22-2682
- Collections: [geo-gse210616](/collections/md/8.md#geo-gse210616)
- Load: `Catalog().dataset("AjsLDvfPhaWocifW0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-i2qytarjg0rfbeqr0000"></a>
## Human basal ganglion

- uid: `I2QYTArJg0RfbEQr0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-i2qytarjg0rfbeqr0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 71,296
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("I2QYTArJg0RfbEQr0000").to_sdata()`


<a id="10x-xenium-small-intestine-pvueryq49fgkcf0v0000"></a>
## Mouse small intestine

- uid: `PVUeRYq49FGKcf0V0000`
- Page: /datasets/10x-xenium-small-intestine-pvueryq49fgkcf0v0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: small intestine
- Modality: RNA
- Observations (cells): 609,695
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9394260
- Publication: https://doi.org/10.1038/s41586-026-10531-6
- Collections: [geo-gse296053](/collections/md/8.md#geo-gse296053)
- Load: `Catalog().dataset("PVUeRYq49FGKcf0V0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-3jtvllyzpsz436qr0000"></a>
## Mouse lung

- uid: `3JTVLlyZPSZ436Qr0000`
- Page: /datasets/visium-spatial-gene-expression-lung-3jtvllyzpsz436qr0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: pulmonary fibrosis
- Modality: RNA
- Observations (spots): 2,775
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250395
- Publication: https://doi.org/10.1038/s41586-025-08727-3
- Collections: [geo-gse250395](/collections/md/f.md#geo-gse250395)
- Load: `Catalog().dataset("3JTVLlyZPSZ436Qr0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-r5evcurmr3g4xv840000"></a>
## Mouse brain

- uid: `R5EVCurMR3G4Xv840000`
- Page: /datasets/visium-spatial-gene-expression-brain-r5evcurmr3g4xv840000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("R5EVCurMR3G4Xv840000").to_sdata()`


<a id="visium-spatial-gene-expression-lymph-node-ytffokdvp0vtvxw10000"></a>
## Human lymph node

- uid: `yTFFOKDVp0vTvXw10000`
- Page: /datasets/visium-spatial-gene-expression-lymph-node-ytffokdvp0vtvxw10000/
- Technology: Visium
- Organism: human
- Tissue: lymph node
- Condition: breast cancer
- Modality: RNA
- Observations (spots): 4,988
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5732359
- Collections: [geo-gse190811](/collections/md/1.md#geo-gse190811)
- Load: `Catalog().dataset("yTFFOKDVp0vTvXw10000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-hohcqtfi2yh71lsy0000"></a>
## Mouse brain

- uid: `hohCQTFi2YH71lSy0000`
- Page: /datasets/visium-spatial-gene-expression-brain-hohcqtfi2yh71lsy0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: traumatic brain injury
- Modality: RNA
- Observations (spots): 2,741
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313407
- Publication: https://doi.org/10.1177/08977151251390528
- Collections: [geo-gse313407](/collections/md/3.md#geo-gse313407)
- Load: `Catalog().dataset("hohCQTFi2YH71lSy0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-b1phbgo66lq15oil0000"></a>
## Human lung

- uid: `B1pHBGo66lQ15oil0000`
- Page: /datasets/visium-spatial-gene-expression-lung-b1phbgo66lq15oil0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: non-small cell lung carcinoma
- Modality: RNA
- Observations (spots): 13,002
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8855717
- Collections: [geo-gse292299](/collections/md/c.md#geo-gse292299)
- Load: `Catalog().dataset("B1pHBGo66lQ15oil0000").to_sdata()`


<a id="visium-spatial-gene-expression-thyroid-gland-ztzuqsvpb7xn91gs0001"></a>
## Human thyroid gland

- uid: `ztZUqSVPB7XN91Gs0001`
- Page: /datasets/visium-spatial-gene-expression-thyroid-gland-ztzuqsvpb7xn91gs0001/
- Technology: Visium
- Organism: human
- Tissue: thyroid gland
- Condition: thyroid gland carcinoma
- Modality: RNA
- Observations (spots): 4,737
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250521
- Collections: [geo-gse250521](/collections/md/5.md#geo-gse250521)
- Load: `Catalog().dataset("ztZUqSVPB7XN91Gs0001").to_sdata()`


<a id="10x-xenium-brain-genmdxh1krwnekrj0000"></a>
## Mouse brain

- uid: `GenMDxh1KRwNeKRj0000`
- Page: /datasets/10x-xenium-brain-genmdxh1krwnekrj0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 58,841
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342202
- Load: `Catalog().dataset("GenMDxh1KRwNeKRj0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-14t8fcrslghkikgz0000"></a>
## Mouse brain

- uid: `14t8fcrSlGhKikGz0000`
- Page: /datasets/visium-spatial-gene-expression-brain-14t8fcrslghkikgz0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,341
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285858
- Publication: https://doi.org/10.1016/j.neuron.2025.05.014
- Collections: [geo-gse285858](/collections/md/d.md#geo-gse285858)
- Load: `Catalog().dataset("14t8fcrSlGhKikGz0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-lung-a4kexpstjskb7kuo0000"></a>
## Human lung

- uid: `A4KeXpsTjSkB7KUO0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-lung-a4kexpstjskb7kuo0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: lung
- Modality: Metabolomics
- Observations: 15,620
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-12-04_00h41m47s
- Load: `Catalog().dataset("A4KeXpsTjSkB7KUO0000").to_sdata()`


<a id="mibi-tof-breast-z9bnprillcc5yrxy0000"></a>
## Human breast

- uid: `Z9bNPrILlcC5Yrxy0000`
- Page: /datasets/mibi-tof-breast-z9bnprillcc5yrxy0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 968
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("Z9bNPrILlcC5Yrxy0000").to_sdata()`


<a id="mibi-tof-lymph-node-5vdnqlmd10dfc4ge0000"></a>
## Human lymph node

- uid: `5vdNqlmd10DfC4GE0000`
- Page: /datasets/mibi-tof-lymph-node-5vdnqlmd10dfc4ge0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,310
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("5vdNqlmd10DfC4GE0000").to_sdata()`


<a id="merfish-brain-avlkrkxgkusu3uer0000"></a>
## Mouse brain

- uid: `avLKRkXgkuSU3ueR0000`
- Page: /datasets/merfish-brain-avlkrkxgkusu3uer0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 14,598
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("avLKRkXgkuSU3ueR0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-lung-vrgtbovxliqidlfj0000"></a>
## Human lung

- uid: `VRgTbovXliqIdlFJ0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-lung-vrgtbovxliqidlfj0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: lung
- Modality: Metabolomics
- Observations: 21,912
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-12-09_21h07m16s
- Load: `Catalog().dataset("VRgTbovXliqIdlFJ0000").to_sdata()`


<a id="10x-xenium-brain-0xrp4q2btvccchhy0000"></a>
## Human brain

- uid: `0xrp4Q2BtVccCHhy0000`
- Page: /datasets/10x-xenium-brain-0xrp4q2btvccchhy0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (cells): 54,266
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE339006
- Load: `Catalog().dataset("0xrp4Q2BtVccCHhy0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-styyn915nb4u58i50000"></a>
## Human lymph node

- uid: `StyyN915nb4U58I50000`
- Page: /datasets/phenocycler-fusion-lymph-node-styyn915nb4u58i50000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 19,159
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("StyyN915nb4U58I50000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-4vurmojxaijmgz5e0000"></a>
## Human skin of body

- uid: `4VUrMOJXAIJmGZ5e0000`
- Page: /datasets/vizgen-merscope-skin-of-body-4vurmojxaijmgz5e0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 10,725
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("4VUrMOJXAIJmGZ5e0000").to_sdata()`


<a id="mibi-tof-lymph-node-v4vwfgvqftgciwqe0000"></a>
## Human lymph node

- uid: `v4vwFgvqFtGCiwqE0000`
- Page: /datasets/mibi-tof-lymph-node-v4vwfgvqftgciwqe0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 871
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("v4vwFgvqFtGCiwqE0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-1fba0ljohfocj9ln0000"></a>
## Human lymph node

- uid: `1Fba0ljohfocj9lN0000`
- Page: /datasets/phenocycler-fusion-lymph-node-1fba0ljohfocj9ln0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: marginal zone lymphoma
- Modality: protein
- Observations (cells): 18,417
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("1Fba0ljohfocj9lN0000").to_sdata()`


<a id="mibi-tof-breast-yylkdymv8vkf8f520000"></a>
## Human breast

- uid: `yylkDymv8vkf8F520000`
- Page: /datasets/mibi-tof-breast-yylkdymv8vkf8f520000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,651
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("yylkDymv8vkf8F520000").to_sdata()`


<a id="merfish-brain-s7wlobr8fpayaisf0000"></a>
## Mouse brain

- uid: `s7wlobr8FPayAISf0000`
- Page: /datasets/merfish-brain-s7wlobr8fpayaisf0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 31,982
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("s7wlobr8FPayAISf0000").to_sdata()`