# SpatialData-DB datasets, shard b6

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-hd-pancreas-rwvwaphrymhups7t0000"></a>
## Human pancreas

- uid: `RwVWapHrYmhUPs7T0000`
- Page: /datasets/visium-hd-pancreas-rwvwaphrymhups7t0000/
- Technology: Visium HD
- Organism: human
- Tissue: pancreas
- Modality: RNA
- Observations (bins): 421,475
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-libraries-human-pancreas
- Load: `Catalog().dataset("RwVWapHrYmhUPs7T0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-jat0paqydfiiffgw0000"></a>
## Mouse spinal cord

- uid: `jAT0pAqyDfiIfFgW0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-jat0paqydfiiffgw0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 405
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("jAT0pAqyDfiIfFgW0000").to_sdata()`


<a id="spatial-transcriptomics-prostate-gland-cpileetwtre18cao0000"></a>
## Human prostate gland

- uid: `CpIlEETWtRe18cao0000`
- Page: /datasets/spatial-transcriptomics-prostate-gland-cpileetwtre18cao0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 190
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482614/
- Publication: https://doi.org/10.1038/s41467-022-33069-3
- Collections: [doi-10-1038-s41467-022-33069-3](/collections/md/a.md#doi-10-1038-s41467-022-33069-3)
- Load: `Catalog().dataset("CpIlEETWtRe18cao0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-xbonffxet2otpaqp0000"></a>
## Human kidney

- uid: `xBonfFXEt2OTpaQP0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-xbonffxet2otpaqp0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: clear cell renal carcinoma
- Modality: RNA
- Observations (spots): 1,349
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/35231421/
- Publication: https://doi.org/10.1016/j.immuni.2022.02.001
- Collections: [doi-10-1016-j-immuni-2022-02-001](/collections/md/d.md#doi-10-1016-j-immuni-2022-02-001)
- Load: `Catalog().dataset("xBonfFXEt2OTpaQP0000").to_sdata()`


<a id="visium-spatial-gene-expression-oral-cavity-komjvgdt7gf2pn030000"></a>
## Human oral cavity

- uid: `kOmJvGDT7Gf2Pn030000`
- Page: /datasets/visium-spatial-gene-expression-oral-cavity-komjvgdt7gf2pn030000/
- Technology: Visium
- Organism: human
- Tissue: oral cavity
- Condition: head and neck squamous cell carcinoma
- Modality: RNA
- Observations (spots): 2,608
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301720
- Publication: https://doi.org/10.1158/1078-0432.CCR-25-2300
- Collections: [geo-gse301720](/collections/md/5.md#geo-gse301720)
- Load: `Catalog().dataset("kOmJvGDT7Gf2Pn030000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-rwt4jgptcapzz9ih0000"></a>
## Human pancreas

- uid: `RwT4JGPTCapZz9IH0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-rwt4jgptcapzz9ih0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 3,347
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("RwT4JGPTCapZz9IH0000").to_sdata()`


<a id="visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-rnkdbbgxyaqollof0000"></a>
## Human synovial membrane of synovial joint

- uid: `rNkDbBgXYaQollOF0000`
- Page: /datasets/visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-rnkdbbgxyaqollof0000/
- Technology: Visium
- Organism: human
- Tissue: synovial membrane of synovial joint
- Condition: rheumatoid arthritis
- Modality: RNA
- Observations (spots): 836
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232734
- Publication: https://doi.org/10.1126/sciimmunol.adm7800
- Collections: [geo-gse232734](/collections/md/8.md#geo-gse232734)
- Load: `Catalog().dataset("rNkDbBgXYaQollOF0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-brain-7agsut4ucdn1vw4d0000"></a>
## Mouse brain

- uid: `7AGsUt4UcDN1Vw4D0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-brain-7agsut4ucdn1vw4d0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: brain
- Modality: Metabolomics
- Observations: 92,868
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-03-28_09h18m57s
- Load: `Catalog().dataset("7AGsUt4UcDN1Vw4D0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-ymqtbl3ocjehmq5j0000"></a>
## Human pancreas

- uid: `Ymqtbl3oCJEHmq5J0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-ymqtbl3ocjehmq5j0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: type 1 diabetes mellitus
- Modality: RNA
- Observations (spots): 4,726
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296626
- Publication: https://doi.org/10.1101/2025.05.19.654940
- Collections: [geo-gse296626](/collections/md/0.md#geo-gse296626)
- Load: `Catalog().dataset("Ymqtbl3oCJEHmq5J0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-nxjhjjsdba08e2rw0000"></a>
## Human ovary

- uid: `nxJhJjSDbA08e2Rw0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-nxjhjjsdba08e2rw0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 1,365
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327312
- Collections: [geo-gse327312](/collections/md/b.md#geo-gse327312)
- Load: `Catalog().dataset("nxJhJjSDbA08e2Rw0000").to_sdata()`


<a id="visium-spatial-gene-expression-lymph-node-vjep4eyy4qhmxdqn0000"></a>
## Human lymph node

- uid: `VJep4eyY4QhmxdQN0000`
- Page: /datasets/visium-spatial-gene-expression-lymph-node-vjep4eyy4qhmxdqn0000/
- Technology: Visium
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: RNA
- Observations (spots): 191
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8324909
- Collections: [geo-gse269695](/collections/md/b.md#geo-gse269695)
- Load: `Catalog().dataset("VJep4eyY4QhmxdQN0000").to_sdata()`


<a id="10x-xenium-stomach-5ocfqya3zqvgwl900000"></a>
## Mouse stomach

- uid: `5OCfqYA3zQvgWL900000`
- Page: /datasets/10x-xenium-stomach-5ocfqya3zqvgwl900000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: stomach
- Condition: diffuse gastric adenocarcinoma
- Modality: RNA
- Observations (cells): 261,111
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304811
- Load: `Catalog().dataset("5OCfqYA3zQvgWL900000").to_sdata()`


<a id="10x-xenium-skin-of-body-hglfhr3uqaryvi0f0000"></a>
## Human skin of body

- uid: `HGLfHr3UQARyvI0F0000`
- Page: /datasets/10x-xenium-skin-of-body-hglfhr3uqaryvi0f0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: melanoma
- Modality: RNA
- Observations (cells): 19,297
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316387
- Load: `Catalog().dataset("HGLfHr3UQARyvI0F0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nqsgtr3ha67ygbta0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `nqSGtR3HA67YgBTa0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nqsgtr3ha67ygbta0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: bipolar disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("nqSGtR3HA67YgBTa0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-zs54cnvnihssmyyn0000"></a>
## Mouse brain

- uid: `Zs54CnVNiHssmyYN0000`
- Page: /datasets/visium-spatial-gene-expression-brain-zs54cnvnihssmyyn0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,094
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("Zs54CnVNiHssmyYN0000").to_sdata()`


<a id="10x-xenium-rectum-ogkwd3eohvslnjug0000"></a>
## Human rectum

- uid: `OgKWd3EoHVsLnjuG0000`
- Page: /datasets/10x-xenium-rectum-ogkwd3eohvslnjug0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: rectum
- Modality: RNA
- Observations (cells): 37,399
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312420
- Publication: https://doi.org/10.1038/s41467-026-72482-w
- Load: `Catalog().dataset("OgKWd3EoHVsLnjuG0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-enjk8nztspnz5ysp0000"></a>
## Human breast

- uid: `ENjK8nzTsPNZ5ySP0000`
- Page: /datasets/visium-spatial-gene-expression-breast-enjk8nztspnz5ysp0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: ductal breast carcinoma in situ
- Modality: RNA
- Observations (spots): 2,952
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE348919
- Collections: [geo-gse348919](/collections/md/4.md#geo-gse348919)
- Load: `Catalog().dataset("ENjK8nzTsPNZ5ySP0000").to_sdata()`


<a id="stereo-seq-liver-m9mf2rpbigadz3jr0000"></a>
## Mouse liver

- uid: `m9Mf2rpBIgADZ3JR0000`
- Page: /datasets/stereo-seq-liver-m9mf2rpbigadz3jr0000/
- Technology: Stereo-seq
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations: 89,983
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE276063
- Collections: [geo-gse276063](/collections/md/9.md#geo-gse276063)
- Load: `Catalog().dataset("m9Mf2rpBIgADZ3JR0000").to_sdata()`


<a id="mibi-tof-breast-ahstovcs4hom1zp10000"></a>
## Human breast

- uid: `AhSTOVcS4hOm1ZP10000`
- Page: /datasets/mibi-tof-breast-ahstovcs4hom1zp10000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,436
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("AhSTOVcS4hOm1ZP10000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-rlprdsiuwbplvdm50000"></a>
## Mouse liver

- uid: `rLPRdsIUwbpLvDm50000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-rlprdsiuwbplvdm50000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-03-28_11h51m46s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("rLPRdsIUwbpLvDm50000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-3zfi8l6fzzgk38cb0000"></a>
## Human kidney

- uid: `3ZFI8l6FzZGK38CB0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-3zfi8l6fzzgk38cb0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 3,698
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-06-03_20h31m24s
- Load: `Catalog().dataset("3ZFI8l6FzZGK38CB0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-p0xknxgcxesix8uo0000"></a>
## Human lymph node

- uid: `P0xkNXgcxEsIX8UO0000`
- Page: /datasets/phenocycler-fusion-lymph-node-p0xknxgcxesix8uo0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: protein
- Observations (cells): 7,274
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("P0xkNXgcxEsIX8UO0000").to_sdata()`


<a id="mibi-tof-skin-of-body-3lu8flvqbldcdhla0000"></a>
## Human skin of body

- uid: `3lU8FLVQBLdcdhla0000`
- Page: /datasets/mibi-tof-skin-of-body-3lu8flvqbldcdhla0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: skin of body
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,183
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("3lU8FLVQBLdcdhla0000").to_sdata()`


<a id="10x-xenium-dorsolateral-prefrontal-cortex-te1sg8v8eo6uhy2z0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `te1Sg8V8eo6uHy2Z0000`
- Page: /datasets/10x-xenium-dorsolateral-prefrontal-cortex-te1sg8v8eo6uhy2z0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (cells): 57,508
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307404
- Load: `Catalog().dataset("te1Sg8V8eo6uHy2Z0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-qycuwss1hkahzhee0000"></a>
## Human kidney

- uid: `QycuWSS1HkAHzheE0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-qycuwss1hkahzhee0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 40,488
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-08-31_21h46m14s
- Load: `Catalog().dataset("QycuWSS1HkAHzheE0000").to_sdata()`


<a id="10x-xenium-brain-dwh0qrzwrnl4l5pl0000"></a>
## Human brain

- uid: `Dwh0qrzWrNl4l5pL0000`
- Page: /datasets/10x-xenium-brain-dwh0qrzwrnl4l5pl0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (cells): 97,780
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260452
- Publication: https://doi.org/10.1038/s41586-026-10214-2
- Load: `Catalog().dataset("Dwh0qrzWrNl4l5pL0000").to_sdata()`


<a id="merfish-brain-hevoqjtzzm9zph2u0000"></a>
## Mouse brain

- uid: `hevOqJTzZM9ZpH2U0000`
- Page: /datasets/merfish-brain-hevoqjtzzm9zph2u0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 10,573
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("hevOqJTzZM9ZpH2U0000").to_sdata()`