# SpatialData-DB datasets, shard b2

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-mucosa-vyk7dohijaggzg6a0000"></a>
## Human mucosa

- uid: `vyK7DoHIjaGgZg6a0000`
- Page: /datasets/visium-spatial-gene-expression-mucosa-vyk7dohijaggzg6a0000/
- Technology: Visium
- Organism: human
- Tissue: mucosa
- Condition: head and neck squamous cell carcinoma
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE268014
- Publication: https://doi.org/10.1038/s41588-026-02723-7
- Collections: [geo-gse268014](/collections/md/a.md#geo-gse268014)
- Load: `Catalog().dataset("vyK7DoHIjaGgZg6a0000").to_sdata()`


<a id="spatial-transcriptomics-brain-u54r74redklbfo490000"></a>
## Mouse brain

- uid: `U54R74ReDklbfo490000`
- Page: /datasets/spatial-transcriptomics-brain-u54r74redklbfo490000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 506
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("U54R74ReDklbfo490000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-dyjyc6jmt9co2rre0000"></a>
## Mouse spinal cord

- uid: `dyJYc6JmT9cO2Rre0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-dyjyc6jmt9co2rre0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 306
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("dyJYc6JmT9cO2Rre0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-grqew8pegcy6vqw50000"></a>
## Human ovary

- uid: `gRqEw8peGCY6vQW50000`
- Page: /datasets/visium-spatial-gene-expression-ovary-grqew8pegcy6vqw50000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Modality: RNA
- Observations (spots): 946
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE268523
- Publication: https://doi.org/10.1002/ctm2.70043
- Collections: [geo-gse268523](/collections/md/8.md#geo-gse268523)
- Load: `Catalog().dataset("gRqEw8peGCY6vQW50000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-pm13nmfokc3tvj7w0000"></a>
## Mouse intestine

- uid: `PM13nMFokc3tVj7w0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-pm13nmfokc3tvj7w0000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 4,039
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
- Publication: https://doi.org/10.1038/s41586-024-08216-z
- Collections: [geo-gse245274](/collections/md/1.md#geo-gse245274)
- Load: `Catalog().dataset("PM13nMFokc3tVj7w0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dqnigwjpa59gwidw0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `dQniGWjpa59GwIDW0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dqnigwjpa59gwidw0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("dQniGWjpa59GwIDW0000").to_sdata()`


<a id="visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-wk5wltfkfxmra4gu0000"></a>
## Human synovial membrane of synovial joint

- uid: `wk5wLtFKfxmRa4Gu0000`
- Page: /datasets/visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-wk5wltfkfxmra4gu0000/
- Technology: Visium
- Organism: human
- Tissue: synovial membrane of synovial joint
- Condition: rheumatoid arthritis
- Modality: RNA
- Observations (spots): 1,184
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347797
- Collections: [geo-gse347797](/collections/md/b.md#geo-gse347797)
- Load: `Catalog().dataset("wk5wLtFKfxmRa4Gu0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-s7qtdvxg9vtthfrz0000"></a>
## Human ovary

- uid: `s7QtdvXg9vtTHfrZ0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-s7qtdvxg9vtthfrz0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 940
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327312
- Collections: [geo-gse327312](/collections/md/b.md#geo-gse327312)
- Load: `Catalog().dataset("s7QtdvXg9vtTHfrZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-lvullj7d0fnhopdz0000"></a>
## Mouse brain

- uid: `lVULLj7D0FnHOPdz0000`
- Page: /datasets/visium-spatial-gene-expression-brain-lvullj7d0fnhopdz0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,453
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325554
- Publication: https://doi.org/10.1111/acel.13832
- Collections: [geo-gse325554](/collections/md/8.md#geo-gse325554)
- Load: `Catalog().dataset("lVULLj7D0FnHOPdz0000").to_sdata()`


<a id="10x-xenium-kidney-nwobj5inax2p3ksl0000"></a>
## Mouse kidney

- uid: `nWObj5iNaX2P3kSl0000`
- Page: /datasets/10x-xenium-kidney-nwobj5inax2p3ksl0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: kidney
- Modality: RNA
- Observations (cells): 397,721
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286051
- Load: `Catalog().dataset("nWObj5iNaX2P3kSl0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-iliw6rahbwnvpeid0000"></a>
## Mouse brain

- uid: `iLIw6RAHBWnvpeid0000`
- Page: /datasets/visium-spatial-gene-expression-brain-iliw6rahbwnvpeid0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,922
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM4644082
- Collections: [geo-gse153424](/collections/md/c.md#geo-gse153424)
- Load: `Catalog().dataset("iLIw6RAHBWnvpeid0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-udqagwcvjwd84pxo0000"></a>
## Human pancreas

- uid: `UDqagWcvjwD84PxO0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-udqagwcvjwd84pxo0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 4,060
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("UDqagWcvjwD84PxO0000").to_sdata()`


<a id="visium-spatial-gene-expression-uterus-4jgsdw843cva5xdc0000"></a>
## Mouse uterus

- uid: `4jgSdW843Cva5xdC0000`
- Page: /datasets/visium-spatial-gene-expression-uterus-4jgsdw843cva5xdc0000/
- Technology: Visium
- Organism: mouse
- Tissue: uterus
- Modality: RNA
- Observations (spots): 1,530
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296581
- Publication: https://doi.org/10.1073/pnas.2528309123
- Collections: [geo-gse296581](/collections/md/3.md#geo-gse296581)
- Load: `Catalog().dataset("4jgSdW843Cva5xdC0000").to_sdata()`


<a id="10x-xenium-rectum-0o5xjupmqymomh2s0000"></a>
## Human rectum

- uid: `0O5xjuPMQymOmH2s0000`
- Page: /datasets/10x-xenium-rectum-0o5xjupmqymomh2s0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: rectum
- Modality: RNA
- Observations (cells): 26,686
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312420
- Publication: https://doi.org/10.1038/s41467-026-72482-w
- Load: `Catalog().dataset("0O5xjuPMQymOmH2s0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-jy42hyrhn8cifirt0000"></a>
## Human ovary

- uid: `jy42HyRhN8ciFIRt0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-jy42hyrhn8cifirt0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 630
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327312
- Collections: [geo-gse327312](/collections/md/b.md#geo-gse327312)
- Load: `Catalog().dataset("jy42HyRhN8ciFIRt0000").to_sdata()`


<a id="10x-xenium-lung-u4zzau8txd49kamn0000"></a>
## Mouse lung

- uid: `U4Zzau8tXd49KAMN0000`
- Page: /datasets/10x-xenium-lung-u4zzau8txd49kamn0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lung
- Condition: tuberculosis
- Modality: RNA
- Observations (cells): 398,650
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE336209
- Publication: https://doi.org/10.64898/2026.06.25.734601
- Load: `Catalog().dataset("U4Zzau8tXd49KAMN0000").to_sdata()`


<a id="visium-spatial-gene-expression-placenta-sbghkz79jpmrtyeo0000"></a>
## Mouse placenta

- uid: `SBGHkZ79JpmrTYEO0000`
- Page: /datasets/visium-spatial-gene-expression-placenta-sbghkz79jpmrtyeo0000/
- Technology: Visium
- Organism: mouse
- Tissue: placenta
- Modality: RNA
- Observations (spots): 1,624
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333401
- Publication: https://doi.org/10.64898/2026.07.11.732137
- Collections: [geo-gse333401](/collections/md/5.md#geo-gse333401)
- Load: `Catalog().dataset("SBGHkZ79JpmrTYEO0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-fiay7uv7euhp06cv0000"></a>
## Mouse brain

- uid: `fIAY7uv7euhP06cV0000`
- Page: /datasets/visium-spatial-gene-expression-brain-fiay7uv7euhp06cv0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,593
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("fIAY7uv7euhP06cV0000").to_sdata()`


<a id="vizgen-merscope-brain-lfbpvsaebf7w97fo0000"></a>
## Mouse brain

- uid: `lfBPvSAEBf7w97fo0000`
- Page: /datasets/vizgen-merscope-brain-lfbpvsaebf7w97fo0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 80,428
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("lfBPvSAEBf7w97fo0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-qpod94ibjvi95zqt0000"></a>
## Macaque basal ganglion

- uid: `QPod94ibJVi95zQt0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-qpod94ibjvi95zqt0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 48,411
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("QPod94ibJVi95zQt0000").to_sdata()`


<a id="merfish-brain-wzwih8xytcxbeu1e0000"></a>
## Mouse brain

- uid: `WzWiH8xyTCxBeu1E0000`
- Page: /datasets/merfish-brain-wzwih8xytcxbeu1e0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 9,135
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("WzWiH8xyTCxBeu1E0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-kyxohz72b58qy8dd0000"></a>
## Macaque basal ganglion

- uid: `KyXOhZ72b58qY8dD0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-kyxohz72b58qy8dd0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 97,992
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("KyXOhZ72b58qY8dD0000").to_sdata()`


<a id="merfish-brain-mepiemwvzlyeslab0000"></a>
## Mouse brain

- uid: `mepieMwVzLyEsLab0000`
- Page: /datasets/merfish-brain-mepiemwvzlyeslab0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 11,621
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("mepieMwVzLyEsLab0000").to_sdata()`


<a id="mibi-tof-breast-0hc9ib7ngbgvcouq0000"></a>
## Human breast

- uid: `0hC9Ib7NGbgvCoUQ0000`
- Page: /datasets/mibi-tof-breast-0hc9ib7ngbgvcouq0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,554
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("0hC9Ib7NGbgvCoUQ0000").to_sdata()`


<a id="merfish-brain-ngaghehwbt7pczwp0000"></a>
## Mouse brain

- uid: `ngAgHEhWBt7PCZwp0000`
- Page: /datasets/merfish-brain-ngaghehwbt7pczwp0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 33,255
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("ngAgHEhWBt7PCZwp0000").to_sdata()`


<a id="mibi-tof-breast-psojrwue0wc2qokz0000"></a>
## Human breast

- uid: `PsoJRWUE0WC2QoKZ0000`
- Page: /datasets/mibi-tof-breast-psojrwue0wc2qokz0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,368
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("PsoJRWUE0WC2QoKZ0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-breast-yim0grq7gtgoa40w0000"></a>
## Human breast

- uid: `yiM0GrQ7GTgoA40W0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-breast-yim0grq7gtgoa40w0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: breast
- Condition: cancer
- Modality: Metabolomics
- Observations: 454,150
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-01-05_22h24m18s
- Publication: https://doi.org/10.1038/s41598-023-50957-w
- Load: `Catalog().dataset("yiM0GrQ7GTgoA40W0000").to_sdata()`


<a id="10x-xenium-breast-t7umq1t0tbhhz1u80000"></a>
## Human breast

- uid: `t7umq1T0TbHhz1U80000`
- Page: /datasets/10x-xenium-breast-t7umq1t0tbhhz1u80000/
- Technology: 10x Xenium
- Organism: human
- Tissue: breast
- Condition: breast cancer
- Modality: RNA
- Observations (cells): 66,382
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311609
- Publication: https://doi.org/10.1038/s41592-026-03089-8
- Load: `Catalog().dataset("t7umq1T0TbHhz1U80000").to_sdata()`


<a id="10x-xenium-brain-agffc7wbtns5lkzs0000"></a>
## Human brain

- uid: `AgFFC7wbTNs5LkZS0000`
- Page: /datasets/10x-xenium-brain-agffc7wbtns5lkzs0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (cells): 103,335
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260452
- Publication: https://doi.org/10.1038/s41586-026-10214-2
- Load: `Catalog().dataset("AgFFC7wbTNs5LkZS0000").to_sdata()`


<a id="10x-xenium-breast-drgcefck3gwkffyy0000"></a>
## Human breast

- uid: `dRgCEfCk3GwKffyY0000`
- Page: /datasets/10x-xenium-breast-drgcefck3gwkffyy0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: breast
- Condition: breast cancer
- Modality: RNA
- Observations (cells): 108,295
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311609
- Publication: https://doi.org/10.1038/s41592-026-03089-8
- Load: `Catalog().dataset("dRgCEfCk3GwKffyY0000").to_sdata()`