# SpatialData-DB datasets, shard b1

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-zone-of-skin-u4psqhjm4df5yia30000"></a>
## Human zone of skin

- uid: `u4PSqhJm4dF5yia30000`
- Page: /datasets/visium-spatial-gene-expression-zone-of-skin-u4psqhjm4df5yia30000/
- Technology: Visium
- Organism: human
- Tissue: zone of skin
- Condition: systemic sclerosis
- Modality: RNA
- Observations (spots): 4,381
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312129
- Publication: https://doi.org/10.1172/jci.insight.198954
- Collections: [geo-gse312129](/collections/md/a.md#geo-gse312129)
- Load: `Catalog().dataset("u4PSqhJm4dF5yia30000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-she944gz6u5yfvop0000"></a>
## Mouse spinal cord

- uid: `she944Gz6U5yFvOp0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-she944gz6u5yfvop0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 99
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("she944Gz6U5yFvOp0000").to_sdata()`


<a id="spatial-transcriptomics-brain-wzr69bumm0blcmnu0000"></a>
## Mouse brain

- uid: `WZR69bumm0BLcmNu0000`
- Page: /datasets/spatial-transcriptomics-brain-wzr69bumm0blcmnu0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 237
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/27365449/
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("WZR69bumm0BLcmNu0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-nbkskwzph5hftlp80000"></a>
## Mouse brain

- uid: `NbKsKWzph5HFtlp80000`
- Page: /datasets/visium-spatial-gene-expression-brain-nbkskwzph5hftlp80000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,675
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41587-023-01937-y
- Publication: https://doi.org/10.1038/s41587-023-01937-y
- Collections: [doi-10-1038-s41587-023-01937-y](/collections/md/b.md#doi-10-1038-s41587-023-01937-y)
- Load: `Catalog().dataset("NbKsKWzph5HFtlp80000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-a7sbuyyawsfevjop0000"></a>
## Mouse spinal cord

- uid: `A7SBUyYawsfevjOP0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-a7sbuyyawsfevjop0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 42
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("A7SBUyYawsfevjOP0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-ufm6xwaskywp1qvz0000"></a>
## Human breast

- uid: `ufm6xWAskYWp1qVZ0000`
- Page: /datasets/visium-spatial-gene-expression-breast-ufm6xwaskywp1qvz0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 844
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210616
- Publication: https://doi.org/10.1158/0008-5472.CAN-22-2682
- Collections: [geo-gse210616](/collections/md/8.md#geo-gse210616)
- Load: `Catalog().dataset("ufm6xWAskYWp1qVZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-uojkw2adljukkhsa0000"></a>
## Human lung

- uid: `UoJkW2aDLjuKKhSa0000`
- Page: /datasets/visium-spatial-gene-expression-lung-uojkw2adljukkhsa0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (spots): 1,591
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE172416
- Publication: https://doi.org/10.1093/nar/gkac084
- Collections: [geo-gse172416](/collections/md/2.md#geo-gse172416)
- Load: `Catalog().dataset("UoJkW2aDLjuKKhSa0000").to_sdata()`


<a id="visium-spatial-gene-expression-oral-cavity-hixqoomrsav1ypfz0000"></a>
## Human oral cavity

- uid: `hIxQoomrsAv1YPfZ0000`
- Page: /datasets/visium-spatial-gene-expression-oral-cavity-hixqoomrsav1ypfz0000/
- Technology: Visium
- Organism: human
- Tissue: oral cavity
- Condition: oral cavity squamous cell carcinoma
- Modality: RNA
- Observations (spots): 2,130
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208253
- Publication: https://doi.org/10.1038/s41467-023-40271-4
- Collections: [geo-gse208253](/collections/md/e.md#geo-gse208253)
- Load: `Catalog().dataset("hIxQoomrsAv1YPfZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-cggjcq6nhn40kcgb0000"></a>
## Mouse liver

- uid: `CgGjcq6NHN40kCgb0000`
- Page: /datasets/visium-spatial-gene-expression-liver-cggjcq6nhn40kcgb0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 3,062
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326636
- Collections: [geo-gse326636](/collections/md/6.md#geo-gse326636)
- Load: `Catalog().dataset("CgGjcq6NHN40kCgb0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-qo4kgfyyr3a0j3uw0001"></a>
## Mouse brain

- uid: `Qo4kgFYyr3A0J3UW0001`
- Page: /datasets/visium-spatial-gene-expression-brain-qo4kgfyyr3a0j3uw0001/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,350
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269543
- Collections: [geo-gse269543](/collections/md/4.md#geo-gse269543)
- Load: `Catalog().dataset("Qo4kgFYyr3A0J3UW0001").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-xvle3hycbg6kf7fn0000"></a>
## Human skin of body

- uid: `xvLe3hYcBG6kF7FN0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-xvle3hycbg6kf7fn0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: skin squamous cell carcinoma
- Modality: RNA
- Observations (spots): 2,895
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE289745
- Publication: https://doi.org/10.1038/s41586-025-09370-8
- Collections: [geo-gse289745](/collections/md/4.md#geo-gse289745)
- Load: `Catalog().dataset("xvLe3hYcBG6kF7FN0000").to_sdata()`


<a id="10x-xenium-spinal-cord-rya3wqffxyrls0xk0000"></a>
## Mouse spinal cord

- uid: `rya3wqfFxYRlS0xK0000`
- Page: /datasets/10x-xenium-spinal-cord-rya3wqffxyrls0xk0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: spinal cord
- Modality: RNA
- Observations (cells): 618,208
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9829822
- Collections: [geo-gse336196](/collections/md/3.md#geo-gse336196)
- Load: `Catalog().dataset("rya3wqfFxYRlS0xK0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-k1fqiwookj4cmvdp0000"></a>
## Mouse brain

- uid: `K1FQiWoOKj4CMVdP0000`
- Page: /datasets/visium-spatial-gene-expression-brain-k1fqiwookj4cmvdp0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,288
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("K1FQiWoOKj4CMVdP0000").to_sdata()`


<a id="visium-spatial-gene-expression-hippocampal-formation-jgz8uccbjncneb7m0000"></a>
## Human hippocampal formation

- uid: `JgZ8uCcbJNCnEb7m0000`
- Page: /datasets/visium-spatial-gene-expression-hippocampal-formation-jgz8uccbjncneb7m0000/
- Technology: Visium
- Organism: human
- Tissue: hippocampal formation
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE264692
- Collections: [geo-gse264692](/collections/md/2.md#geo-gse264692)
- Load: `Catalog().dataset("JgZ8uCcbJNCnEb7m0000").to_sdata()`


<a id="10x-xenium-kidney-jvoldq0g9hrfr5090000"></a>
## Human kidney

- uid: `jVoLDQ0g9HrFR5090000`
- Page: /datasets/10x-xenium-kidney-jvoldq0g9hrfr5090000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Condition: membranous glomerulonephritis
- Modality: RNA
- Observations (cells): 20,340
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286186
- Collections: [geo-gse286184](/collections/md/4.md#geo-gse286184)
- Load: `Catalog().dataset("jVoLDQ0g9HrFR5090000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ix5aoatiog3awzja0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `ix5AOatiOG3AwZJa0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ix5aoatiog3awzja0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("ix5AOatiOG3AwZJa0000").to_sdata()`


<a id="visium-spatial-gene-expression-left-lobe-of-liver-o3kwjv4qcfuakws60000"></a>
## Mouse left lobe of liver

- uid: `O3kWJv4QCFUakws60000`
- Page: /datasets/visium-spatial-gene-expression-left-lobe-of-liver-o3kwjv4qcfuakws60000/
- Technology: Visium
- Organism: mouse
- Tissue: left lobe of liver
- Modality: RNA
- Observations (spots): 3,906
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9751334
- Collections: [geo-gse332601](/collections/md/5.md#geo-gse332601)
- Load: `Catalog().dataset("O3kWJv4QCFUakws60000").to_sdata()`


<a id="visium-spatial-gene-expression-spleen-lx6szqsvlneua1kn0000"></a>
## Human spleen

- uid: `lx6SZqsVlneUa1kn0000`
- Page: /datasets/visium-spatial-gene-expression-spleen-lx6szqsvlneua1kn0000/
- Technology: Visium
- Organism: human
- Tissue: spleen
- Condition: myelofibrosis
- Modality: RNA
- Observations (spots): 4,979
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE332563
- Collections: [geo-gse332563](/collections/md/b.md#geo-gse332563)
- Load: `Catalog().dataset("lx6SZqsVlneUa1kn0000").to_sdata()`


<a id="visium-spatial-gene-expression-unknown-jp2q3w5snez3jjct0000"></a>
## Human unknown

- uid: `jP2q3w5SnEZ3jjCt0000`
- Page: /datasets/visium-spatial-gene-expression-unknown-jp2q3w5snez3jjct0000/
- Technology: Visium
- Organism: human
- Tissue: unknown
- Condition: diffuse large B-cell lymphoma
- Modality: RNA
- Observations (spots): 3,287
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9980506
- Collections: [geo-gse344506](/collections/md/1.md#geo-gse344506)
- Load: `Catalog().dataset("jP2q3w5SnEZ3jjCt0000").to_sdata()`


<a id="10x-xenium-skin-of-body-nikmqfkmyvds510k0000"></a>
## Human skin of body

- uid: `NIkmqFKMyVDS510k0000`
- Page: /datasets/10x-xenium-skin-of-body-nikmqfkmyvds510k0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: melanoma
- Modality: RNA
- Observations (cells): 44,029
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316387
- Load: `Catalog().dataset("NIkmqFKMyVDS510k0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-ypenwt8xbrtbwq390000"></a>
## Mouse heart

- uid: `ypENWT8xBrtBWQ390000`
- Page: /datasets/visium-spatial-gene-expression-heart-ypenwt8xbrtbwq390000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Condition: myocardial infarction
- Modality: RNA
- Observations (spots): 1,577
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5943189
- Collections: [geo-gse176092](/collections/md/0.md#geo-gse176092)
- Load: `Catalog().dataset("ypENWT8xBrtBWQ390000").to_sdata()`


<a id="merfish-brain-8xk9xw1c5teju8tk0000"></a>
## Mouse brain

- uid: `8xK9XW1c5teJU8TK0000`
- Page: /datasets/merfish-brain-8xk9xw1c5teju8tk0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 104,187
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-3.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-3](/collections/md/6.md#abc-zhuang-abca-3)
- Load: `Catalog().dataset("8xK9XW1c5teJU8TK0000").to_sdata()`


<a id="10x-xenium-vestibulocochlear-nerve-ugpfwsp7dlgfpx8r0000"></a>
## Human vestibulocochlear nerve

- uid: `UgpfwsP7dlGFPX8R0000`
- Page: /datasets/10x-xenium-vestibulocochlear-nerve-ugpfwsp7dlgfpx8r0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: vestibulocochlear nerve
- Condition: acoustic neuroma
- Modality: RNA
- Observations (cells): 81,967
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE345691
- Load: `Catalog().dataset("UgpfwsP7dlGFPX8R0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-unau5yp6wmtplsfo0000"></a>
## Human kidney

- uid: `uNAu5Yp6WmtPlSFO0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-unau5yp6wmtplsfo0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 4,288
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-07-13_17h14m22s
- Load: `Catalog().dataset("uNAu5Yp6WmtPlSFO0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-nms8hxvtmvatigbe0000"></a>
## Human lymph node

- uid: `nMS8hXvtMvAtigBE0000`
- Page: /datasets/phenocycler-fusion-lymph-node-nms8hxvtmvatigbe0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 9,744
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("nMS8hXvtMvAtigBE0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-d7g15mkin3lrk3dc0000"></a>
## Human kidney

- uid: `D7G15MkIN3LRk3DC0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-d7g15mkin3lrk3dc0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 117,658
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2024-10-07_19h19m50s
- Publication: https://doi.org/10.1021/jasms.4c00494
- Load: `Catalog().dataset("D7G15MkIN3LRk3DC0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-ocnc0ajfku3bmapv0000"></a>
## Mouse liver

- uid: `OCNc0ajfKu3BmapV0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-ocnc0ajfku3bmapv0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-03-28_11h56m07s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("OCNc0ajfKu3BmapV0000").to_sdata()`