# SpatialData-DB datasets, shard af

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="spatial-transcriptomics-spinal-cord-m692pero4l38edds0000"></a>
## Mouse spinal cord

- uid: `M692peRO4L38EDds0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-m692pero4l38edds0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 319
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("M692peRO4L38EDds0000").to_sdata()`


<a id="spatial-transcriptomics-prostate-gland-syvgrzl16omnlqch0000"></a>
## Human prostate gland

- uid: `SYVgrzl16oMnLQCH0000`
- Page: /datasets/spatial-transcriptomics-prostate-gland-syvgrzl16omnlqch0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 129
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482614/
- Publication: https://doi.org/10.1038/s41467-022-33069-3
- Collections: [doi-10-1038-s41467-022-33069-3](/collections/md/a.md#doi-10-1038-s41467-022-33069-3)
- Load: `Catalog().dataset("SYVgrzl16oMnLQCH0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-ui949nmpiypptd6s0000"></a>
## Mouse spinal cord

- uid: `uI949nMpiYppTD6s0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-ui949nmpiypptd6s0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 264
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("uI949nMpiYppTD6s0000").to_sdata()`


<a id="spatial-transcriptomics-prostate-gland-3kmun7vvevz27ll10000"></a>
## Human prostate gland

- uid: `3kmuN7VVEVz27LL10000`
- Page: /datasets/spatial-transcriptomics-prostate-gland-3kmun7vvevz27ll10000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 82
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482614/
- Publication: https://doi.org/10.1038/s41467-022-33069-3
- Collections: [doi-10-1038-s41467-022-33069-3](/collections/md/a.md#doi-10-1038-s41467-022-33069-3)
- Load: `Catalog().dataset("3kmuN7VVEVz27LL10000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-ve3laoupuijtf49w0000"></a>
## Human kidney

- uid: `ve3lAouPUiJTF49w0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-ve3laoupuijtf49w0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: acute kidney failure
- Modality: RNA
- Observations (spots): 640
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10356613/
- Publication: https://doi.org/10.1038/s41586-023-05769-3
- Collections: [doi-10-1038-s41586-023-05769-3](/collections/md/e.md#doi-10-1038-s41586-023-05769-3)
- Load: `Catalog().dataset("ve3lAouPUiJTF49w0000").to_sdata()`


<a id="visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-np8vpr1bgpiiellx0000"></a>
## Human synovial membrane of synovial joint

- uid: `nP8Vpr1BgPiIeLLX0000`
- Page: /datasets/visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-np8vpr1bgpiiellx0000/
- Technology: Visium
- Organism: human
- Tissue: synovial membrane of synovial joint
- Condition: psoriatic arthritis
- Modality: RNA
- Observations (spots): 1,389
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228972
- Publication: https://doi.org/10.1038/s41590-024-01774-4
- Collections: [geo-gse228972](/collections/md/c.md#geo-gse228972)
- Load: `Catalog().dataset("nP8Vpr1BgPiIeLLX0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-r0am3etawmpcmmmh0000"></a>
## Human brain

- uid: `r0am3EtAWMpCMmmH0000`
- Page: /datasets/visium-spatial-gene-expression-brain-r0am3etawmpcmmmh0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 1,887
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235672
- Publication: https://doi.org/10.1038/s43018-023-00598-9
- Collections: [geo-gse235672](/collections/md/b.md#geo-gse235672)
- Load: `Catalog().dataset("r0am3EtAWMpCMmmH0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-wp8r9hacusngpy6h0000"></a>
## Human breast

- uid: `Wp8r9HACUSNgPY6H0000`
- Page: /datasets/visium-spatial-gene-expression-breast-wp8r9hacusngpy6h0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 1,167
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210616
- Publication: https://doi.org/10.1158/0008-5472.CAN-22-2682
- Collections: [geo-gse210616](/collections/md/8.md#geo-gse210616)
- Load: `Catalog().dataset("Wp8r9HACUSNgPY6H0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-pf7x5hr5ymvohvg40000"></a>
## Mouse brain

- uid: `Pf7X5hr5YmVoHvg40000`
- Page: /datasets/visium-spatial-gene-expression-brain-pf7x5hr5ymvohvg40000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,587
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249403
- Publication: https://doi.org/10.1038/s41593-026-02420-y
- Collections: [geo-gse249403](/collections/md/9.md#geo-gse249403)
- Load: `Catalog().dataset("Pf7X5hr5YmVoHvg40000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-kjpqjrg3smcms0860000"></a>
## Human kidney

- uid: `KjPQJRG3SMCms0860000`
- Page: /datasets/visium-spatial-gene-expression-kidney-kjpqjrg3smcms0860000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: diabetic kidney disease
- Modality: RNA
- Observations (spots): 1,373
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307817
- Publication: https://doi.org/10.1016/j.kint.2026.03.020
- Collections: [geo-gse307817](/collections/md/a.md#geo-gse307817)
- Load: `Catalog().dataset("KjPQJRG3SMCms0860000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-810btrgnbqffuzxu0000"></a>
## Human brain

- uid: `810BTRgNbqFFUzXu0000`
- Page: /datasets/visium-spatial-gene-expression-brain-810btrgnbqffuzxu0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 955
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE237183
- Publication: https://doi.org/10.1016/j.cell.2024.03.029
- Collections: [geo-gse237183](/collections/md/d.md#geo-gse237183)
- Load: `Catalog().dataset("810BTRgNbqFFUzXu0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-white-matter-vn9q7uh3nsjxtfng0000"></a>
## Human brain white matter

- uid: `VN9Q7UH3nSjXtFNg0000`
- Page: /datasets/visium-spatial-gene-expression-brain-white-matter-vn9q7uh3nsjxtfng0000/
- Technology: Visium
- Organism: human
- Tissue: brain white matter
- Condition: multiple sclerosis
- Modality: RNA
- Observations (spots): 3,512
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE277435
- Publication: https://doi.org/10.1038/s41467-025-63371-9
- Collections: [geo-gse277435](/collections/md/0.md#geo-gse277435)
- Load: `Catalog().dataset("VN9Q7UH3nSjXtFNg0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-1koulpst5eqhjdgz0000"></a>
## Human ovary

- uid: `1KOUlpST5EqHJdGZ0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-1koulpst5eqhjdgz0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 1,504
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6506112
- Collections: [geo-gse211956](/collections/md/0.md#geo-gse211956)
- Load: `Catalog().dataset("1KOUlpST5EqHJdGZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsal-root-ganglion-178ooj6qvhdnyrnj0000"></a>
## Crab-eating macaque dorsal root ganglion

- uid: `178oOJ6QvHdnYrNj0000`
- Page: /datasets/visium-spatial-gene-expression-dorsal-root-ganglion-178ooj6qvhdnyrnj0000/
- Technology: Visium
- Organism: crab-eating macaque
- Tissue: dorsal root ganglion
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9369746
- Collections: [geo-gse313530](/collections/md/2.md#geo-gse313530)
- Load: `Catalog().dataset("178oOJ6QvHdnYrNj0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-czymhcw5kzyedwkb0000"></a>
## Human skin of body

- uid: `CzYmhcW5KzyeDwkB0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-czymhcw5kzyedwkb0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: systemic sclerosis
- Modality: RNA
- Observations (spots): 951
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7932820
- Collections: [geo-gse249279](/collections/md/3.md#geo-gse249279)
- Load: `Catalog().dataset("CzYmhcW5KzyeDwkB0000").to_sdata()`


<a id="10x-xenium-kidney-wuuicn3yjz9v0chy0000"></a>
## Human kidney

- uid: `WUuICN3yJz9v0cHY0000`
- Page: /datasets/10x-xenium-kidney-wuuicn3yjz9v0chy0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Condition: diabetic kidney disease
- Modality: RNA
- Observations (cells): 34,621
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286186
- Collections: [geo-gse286184](/collections/md/4.md#geo-gse286184)
- Load: `Catalog().dataset("WUuICN3yJz9v0cHY0000").to_sdata()`


<a id="mibi-tof-breast-nxgyycpbi0n6q3dj0000"></a>
## Human breast

- uid: `nXgYYCPBi0n6q3DJ0000`
- Page: /datasets/mibi-tof-breast-nxgyycpbi0n6q3dj0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,069
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("nXgYYCPBi0n6q3DJ0000").to_sdata()`


<a id="vizgen-merscope-brain-sub7slvl6vaddlsn0000"></a>
## Mouse brain

- uid: `SUB7SlVL6VaddLSn0000`
- Page: /datasets/vizgen-merscope-brain-sub7slvl6vaddlsn0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 112,993
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275026
- Publication: https://doi.org/10.1038/s41586-025-09662-z
- Collections: [geo-gse275026](/collections/md/f.md#geo-gse275026)
- Load: `Catalog().dataset("SUB7SlVL6VaddLSn0000").to_sdata()`


<a id="merfish-brain-k52505ra1rgfz9io0000"></a>
## Mouse brain

- uid: `k52505ra1rgFz9IO0000`
- Page: /datasets/merfish-brain-k52505ra1rgfz9io0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 22,963
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("k52505ra1rgFz9IO0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-f6af07wa7rgcgc5d0000"></a>
## Human kidney

- uid: `f6af07wA7RgCgC5d0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-f6af07wa7rgcgc5d0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 2,772
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-05-26_22h01m31s
- Load: `Catalog().dataset("f6af07wA7RgCgC5d0000").to_sdata()`


<a id="mibi-tof-breast-5bpabylmri9kck7g0000"></a>
## Human breast

- uid: `5bpAbyLmrI9Kck7G0000`
- Page: /datasets/mibi-tof-breast-5bpabylmri9kck7g0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,900
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("5bpAbyLmrI9Kck7G0000").to_sdata()`


<a id="mibi-tof-breast-fk0wssdprhncsh2p0000"></a>
## Human breast

- uid: `fk0wssDPrHNcsH2P0000`
- Page: /datasets/mibi-tof-breast-fk0wssdprhncsh2p0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 792
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("fk0wssDPrHNcsH2P0000").to_sdata()`


<a id="mibi-tof-liver-hcdqfwzipfjpadwl0000"></a>
## Human liver

- uid: `hcdqFwZipfjpadwl0000`
- Page: /datasets/mibi-tof-liver-hcdqfwzipfjpadwl0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: liver
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 302
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("hcdqFwZipfjpadwl0000").to_sdata()`