# SpatialData-DB datasets, shard ac

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-hd-colon-4ogpqtscryc4veqe0000"></a>
## Human colon

- uid: `4OgPqTscrYc4veqE0000`
- Page: /datasets/visium-hd-colon-4ogpqtscryc4veqe0000/
- Technology: Visium HD
- Organism: human
- Tissue: colon
- Condition: colorectal cancer
- Modality: RNA
- Observations (bins): 507,684
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/platforms/visium/product-family/dataset-human-crc
- Collections: [oliveira-2024-colorectal](/collections/md/b.md#oliveira-2024-colorectal)
- Load: `Catalog().dataset("4OgPqTscrYc4veqE0000").to_sdata()`


<a id="visium-spatial-gene-expression-dental-pulp-khuzzjthru0lhmxe0000"></a>
## Human dental pulp

- uid: `khuzZJThrU0LhMxe0000`
- Page: /datasets/visium-spatial-gene-expression-dental-pulp-khuzzjthru0lhmxe0000/
- Technology: Visium
- Organism: human
- Tissue: dental pulp
- Condition: pulpitis
- Modality: RNA
- Observations (spots): 1,496
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE322883
- Collections: [geo-gse322883](/collections/md/6.md#geo-gse322883)
- Load: `Catalog().dataset("khuzZJThrU0LhMxe0000").to_sdata()`


<a id="spatial-transcriptomics-breast-lw1dzss5b0zmjwva0000"></a>
## Human breast

- uid: `lw1dZSS5B0ZMjwVA0000`
- Page: /datasets/spatial-transcriptomics-breast-lw1dzss5b0zmjwva0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 184
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/34650042/
- Publication: https://doi.org/10.1038/s41467-021-26271-2
- Collections: [doi-10-1038-s41467-021-26271-2](/collections/md/6.md#doi-10-1038-s41467-021-26271-2)
- Load: `Catalog().dataset("lw1dZSS5B0ZMjwVA0000").to_sdata()`


<a id="spatial-transcriptomics-breast-lg22osxs5mdaivra0000"></a>
## Human breast

- uid: `Lg22OSXs5MDaIVra0000`
- Page: /datasets/spatial-transcriptomics-breast-lg22osxs5mdaivra0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 414
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aaf2403
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("Lg22OSXs5MDaIVra0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-iddillx2hvdelw5r0000"></a>
## Mouse brain

- uid: `IDDiLLx2HVdelW5R0000`
- Page: /datasets/visium-spatial-gene-expression-brain-iddillx2hvdelw5r0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,694
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE182127
- Publication: https://doi.org/10.1016/j.freeradbiomed.2021.11.011
- Collections: [geo-gse182127](/collections/md/9.md#geo-gse182127)
- Load: `Catalog().dataset("IDDiLLx2HVdelW5R0000").to_sdata()`


<a id="visium-spatial-gene-expression-eye-knzk6uqr6dubr0gf0000"></a>
## Human eye

- uid: `knzk6UQR6DUBr0gF0000`
- Page: /datasets/visium-spatial-gene-expression-eye-knzk6uqr6dubr0gf0000/
- Technology: Visium
- Organism: human
- Tissue: eye
- Condition: wet macular degeneration
- Modality: RNA
- Observations (spots): 663
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10312719/
- Publication: https://doi.org/10.1101/2023.06.16.544770
- Collections: [doi-10-1101-2023-06-16-544770](/collections/md/3.md#doi-10-1101-2023-06-16-544770)
- Load: `Catalog().dataset("knzk6UQR6DUBr0gF0000").to_sdata()`


<a id="visium-spatial-gene-expression-skeletal-muscle-tissue-iuhwzylkhiwge93e0000"></a>
## Mouse skeletal muscle tissue

- uid: `IUhWZylkhiwgE93e0000`
- Page: /datasets/visium-spatial-gene-expression-skeletal-muscle-tissue-iuhwzylkhiwge93e0000/
- Technology: Visium
- Organism: mouse
- Tissue: skeletal muscle tissue
- Modality: RNA
- Observations (spots): 4,992
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41587-022-01517-6
- Publication: https://doi.org/10.1038/s41587-022-01517-6
- Collections: [doi-10-1038-s41587-022-01517-6](/collections/md/2.md#doi-10-1038-s41587-022-01517-6)
- Load: `Catalog().dataset("IUhWZylkhiwgE93e0000").to_sdata()`


<a id="visium-spatial-gene-expression-skeletal-muscle-tissue-3cjkiuk3yctvwhlw0000"></a>
## Mouse skeletal muscle tissue

- uid: `3CJkiuK3ycTvwhlw0000`
- Page: /datasets/visium-spatial-gene-expression-skeletal-muscle-tissue-3cjkiuk3yctvwhlw0000/
- Technology: Visium
- Organism: mouse
- Tissue: skeletal muscle tissue
- Modality: RNA
- Observations (spots): 4,992
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41587-022-01517-6
- Publication: https://doi.org/10.1038/s41587-022-01517-6
- Collections: [doi-10-1038-s41587-022-01517-6](/collections/md/2.md#doi-10-1038-s41587-022-01517-6)
- Load: `Catalog().dataset("3CJkiuK3ycTvwhlw0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-xg9btcmybp1ifrgx0000"></a>
## Human breast

- uid: `XG9btcMybp1iFRGx0000`
- Page: /datasets/visium-spatial-gene-expression-breast-xg9btcmybp1ifrgx0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 1,868
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210616
- Publication: https://doi.org/10.1158/0008-5472.CAN-22-2682
- Collections: [geo-gse210616](/collections/md/8.md#geo-gse210616)
- Load: `Catalog().dataset("XG9btcMybp1iFRGx0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-dh0hm1vcd1calqje0000"></a>
## Human liver

- uid: `DH0HM1Vcd1CAlQjE0000`
- Page: /datasets/visium-spatial-gene-expression-liver-dh0hm1vcd1calqje0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 2,276
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE281759
- Publication: https://doi.org/10.1016/j.jhepr.2026.101790
- Collections: [geo-gse281759](/collections/md/3.md#geo-gse281759)
- Load: `Catalog().dataset("DH0HM1Vcd1CAlQjE0000").to_sdata()`


<a id="merfish-brain-az9trualg6t0tjfu0000"></a>
## Mouse brain

- uid: `Az9TruaLg6t0tjFu0000`
- Page: /datasets/merfish-brain-az9trualg6t0tjfu0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 10,442
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("Az9TruaLg6t0tjFu0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-7ls3xln8mi1ckxtg0000"></a>
## Mouse breast

- uid: `7LS3XlN8Mi1cKXTG0000`
- Page: /datasets/visium-spatial-gene-expression-breast-7ls3xln8mi1ckxtg0000/
- Technology: Visium
- Organism: mouse
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 1,833
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Collections: [geo-gse299631](/collections/md/e.md#geo-gse299631)
- Load: `Catalog().dataset("7LS3XlN8Mi1cKXTG0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-xonowvlcg2yvz6e50000"></a>
## Mouse brain

- uid: `xonoWvlCg2YVz6e50000`
- Page: /datasets/visium-spatial-gene-expression-brain-xonowvlcg2yvz6e50000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,468
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("xonoWvlCg2YVz6e50000").to_sdata()`


<a id="10x-xenium-kidney-rxmxbcegivy7cunl0000"></a>
## Human kidney

- uid: `RxMxBceGIVY7cunl0000`
- Page: /datasets/10x-xenium-kidney-rxmxbcegivy7cunl0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Condition: lipoid nephrosis
- Modality: RNA
- Observations (cells): 20,202
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286186
- Collections: [geo-gse286184](/collections/md/4.md#geo-gse286184)
- Load: `Catalog().dataset("RxMxBceGIVY7cunl0000").to_sdata()`


<a id="visium-spatial-gene-expression-ectocervix-yqmyycjqkok9wjwu0000"></a>
## Human ectocervix

- uid: `yQmYycjqkoK9WjWU0000`
- Page: /datasets/visium-spatial-gene-expression-ectocervix-yqmyycjqkok9wjwu0000/
- Technology: Visium
- Organism: human
- Tissue: ectocervix
- Modality: RNA
- Observations (spots): 1,256
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8811056
- Collections: [geo-gse290350](/collections/md/0.md#geo-gse290350)
- Load: `Catalog().dataset("yQmYycjqkoK9WjWU0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-mhxq02gt0gdiqhem0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `MhXQ02gt0gdIqHeM0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-mhxq02gt0gdiqhem0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: bipolar disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("MhXQ02gt0gdIqHeM0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-2mh18dbn2ci6mw1t0000"></a>
## Mouse liver

- uid: `2mH18dbN2cI6mW1T0000`
- Page: /datasets/visium-spatial-gene-expression-liver-2mh18dbn2ci6mw1t0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 3,619
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("2mH18dbN2cI6mW1T0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-qjtzpk4h9swet2zj0000"></a>
## Mouse heart

- uid: `QJtZPK4H9sWEt2zJ0000`
- Page: /datasets/visium-spatial-gene-expression-heart-qjtzpk4h9swet2zj0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Condition: type 2 diabetes mellitus
- Modality: RNA
- Observations (spots): 1,947
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8806102
- Collections: [geo-gse290094](/collections/md/b.md#geo-gse290094)
- Load: `Catalog().dataset("QJtZPK4H9sWEt2zJ0000").to_sdata()`


<a id="10x-xenium-brain-wwgvzucgftztlw850000"></a>
## Mouse brain

- uid: `WWGvzucgFTztLw850000`
- Page: /datasets/10x-xenium-brain-wwgvzucgftztlw850000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 54,343
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342913
- Load: `Catalog().dataset("WWGvzucgFTztLw850000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-mckkvekocmmugedm0000"></a>
## Human ovary

- uid: `MCKkvEkoCMmuGeDm0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-mckkvekocmmugedm0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 1,081
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327312
- Collections: [geo-gse327312](/collections/md/b.md#geo-gse327312)
- Load: `Catalog().dataset("MCKkvEkoCMmuGeDm0000").to_sdata()`


<a id="10x-xenium-skin-of-body-ldekmdzkygsqnla20000"></a>
## Human skin of body

- uid: `LdeKmdZkygSqNla20000`
- Page: /datasets/10x-xenium-skin-of-body-ldekmdzkygsqnla20000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: acne
- Modality: RNA
- Observations (cells): 6,679
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301280
- Load: `Catalog().dataset("LdeKmdZkygSqNla20000").to_sdata()`


<a id="merfish-brain-ymgnkqsvkxbsefku0000"></a>
## Mouse brain

- uid: `yMgNKqSvkXbSeFKu0000`
- Page: /datasets/merfish-brain-ymgnkqsvkxbsefku0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 84,605
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-3.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-3](/collections/md/6.md#abc-zhuang-abca-3)
- Load: `Catalog().dataset("yMgNKqSvkXbSeFKu0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-hfquqoujto8pvheg0000"></a>
## Human kidney

- uid: `HfQUQoUJto8PVHEG0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-hfquqoujto8pvheg0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 4,620
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-08-01_01h42m22s
- Load: `Catalog().dataset("HfQUQoUJto8PVHEG0000").to_sdata()`


<a id="mibi-tof-breast-ys876zij3vvlifnp0000"></a>
## Human breast

- uid: `YS876ZiJ3VvLifnp0000`
- Page: /datasets/mibi-tof-breast-ys876zij3vvlifnp0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 13,017
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("YS876ZiJ3VvLifnp0000").to_sdata()`


<a id="vizgen-merscope-brain-johrhqhyvb1apyeh0000"></a>
## Mouse brain

- uid: `johRhQHyvb1Apyeh0000`
- Page: /datasets/vizgen-merscope-brain-johrhqhyvb1apyeh0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 9,558
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("johRhQHyvb1Apyeh0000").to_sdata()`


<a id="10x-xenium-descending-colon-x9knpyjjczjlkcgv0000"></a>
## Human descending colon

- uid: `x9knPyJJCZjLKCgV0000`
- Page: /datasets/10x-xenium-descending-colon-x9knpyjjczjlkcgv0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: descending colon
- Condition: ulcerative colitis
- Modality: RNA
- Observations (cells): 16,221
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330953
- Publication: https://doi.org/10.1126/science.aeh7112
- Load: `Catalog().dataset("x9knPyJJCZjLKCgV0000").to_sdata()`


<a id="10x-xenium-sigmoid-colon-qydqjnr0zi3kj3ck0000"></a>
## Human sigmoid colon

- uid: `QYDQjnR0zi3kj3cK0000`
- Page: /datasets/10x-xenium-sigmoid-colon-qydqjnr0zi3kj3ck0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: sigmoid colon
- Condition: Crohn disease
- Modality: RNA
- Observations (cells): 21,966
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330953
- Publication: https://doi.org/10.1126/science.aeh7112
- Load: `Catalog().dataset("QYDQjnR0zi3kj3cK0000").to_sdata()`


<a id="10x-xenium-pancreas-wdesmlrb4cwh39rr0000"></a>
## Mouse pancreas

- uid: `wDEsMLRB4cWH39RR0000`
- Page: /datasets/10x-xenium-pancreas-wdesmlrb4cwh39rr0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (cells): 55,579
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341984
- Load: `Catalog().dataset("wDEsMLRB4cWH39RR0000").to_sdata()`


<a id="10x-xenium-heart-utnqyyekxl2wkykd0000"></a>
## Human heart

- uid: `utnqYYEKxL2wKyKd0000`
- Page: /datasets/10x-xenium-heart-utnqyyekxl2wkykd0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: heart
- Condition: cardiac sarcoidosis
- Modality: RNA
- Observations (cells): 117,332
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319771
- Publication: https://doi.org/10.1161/CIRCULATIONAHA.126.079304
- Load: `Catalog().dataset("utnqYYEKxL2wKyKd0000").to_sdata()`


<a id="merfish-brain-oeugkdkxnj3niigf0000"></a>
## Mouse brain

- uid: `oEuGKdkxNJ3NiIGF0000`
- Page: /datasets/merfish-brain-oeugkdkxnj3niigf0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 30,741
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("oEuGKdkxNJ3NiIGF0000").to_sdata()`