# SpatialData-DB datasets, shard ab

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-breast-hslzbzuehbtjows70000"></a>
## Human breast

- uid: `HSlZBzuEHbTJOWs70000`
- Page: /datasets/visium-spatial-gene-expression-breast-hslzbzuehbtjows70000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: breast cancer
- Modality: RNA
- Observations (spots): 4,169
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/gene-and-protein-expression-library-of-human-breast-cancer-cytassist-ffpe-2-standard
- Load: `Catalog().dataset("HSlZBzuEHbTJOWs70000").to_sdata()`


<a id="visium-hd-lymph-node-zzpdudpzxp1rg0sm0002"></a>
## Human lymph node

- uid: `zZpdUDpzxp1rG0sM0002`
- Page: /datasets/visium-hd-lymph-node-zzpdudpzxp1rg0sm0002/
- Technology: Visium HD
- Organism: human
- Tissue: lymph node
- Condition: breast cancer
- Modality: RNA
- Observations (bins): 20,644
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9025384
- Publication: https://doi.org/10.1038/s41467-025-64981-z
- Collections: [geo-gse298872](/collections/md/1.md#geo-gse298872)
- Load: `Catalog().dataset("zZpdUDpzxp1rG0sM0002").to_sdata()`


<a id="visium-spatial-gene-expression-infrapatellar-fat-pad-ifa4spqhpaqw5irr0000"></a>
## Human infrapatellar fat pad

- uid: `iFa4spQHpAQW5irr0000`
- Page: /datasets/visium-spatial-gene-expression-infrapatellar-fat-pad-ifa4spqhpaqw5irr0000/
- Technology: Visium
- Organism: human
- Tissue: infrapatellar fat pad
- Condition: osteoarthritis, knee
- Modality: RNA
- Observations (spots): 3,034
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253199
- Publication: https://doi.org/10.1136/ard-2024-225928
- Collections: [geo-gse253199](/collections/md/9.md#geo-gse253199)
- Load: `Catalog().dataset("iFa4spQHpAQW5irr0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-yceffejtwg3yzolu0000"></a>
## Mouse spinal cord

- uid: `YCeffEJtwg3yZoLU0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-yceffejtwg3yzolu0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 82
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("YCeffEJtwg3yZoLU0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-2baptkej0f14p9v00000"></a>
## Mouse brain

- uid: `2baPTkeJ0F14p9v00000`
- Page: /datasets/visium-spatial-gene-expression-brain-2baptkej0f14p9v00000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,399
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/36776149/
- Publication: https://doi.org/10.1016/j.xgen.2021.100065
- Collections: [doi-10-1016-j-xgen-2021-100065](/collections/md/0.md#doi-10-1016-j-xgen-2021-100065)
- Load: `Catalog().dataset("2baPTkeJ0F14p9v00000").to_sdata()`


<a id="visium-spatial-gene-expression-thymus-vs36eewyvrxohf0t0000"></a>
## Human thymus

- uid: `vs36EEwyvrXohF0T0000`
- Page: /datasets/visium-spatial-gene-expression-thymus-vs36eewyvrxohf0t0000/
- Technology: Visium
- Organism: human
- Tissue: thymus
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207205
- Publication: https://doi.org/10.3389/fimmu.2022.1092028
- Collections: [geo-gse207205](/collections/md/6.md#geo-gse207205)
- Load: `Catalog().dataset("vs36EEwyvrXohF0T0000").to_sdata()`


<a id="visium-spatial-gene-expression-mesenteric-artery-pm5tasjki4cqziic0000"></a>
## Human mesenteric artery

- uid: `Pm5TAsJkI4CQZiIc0000`
- Page: /datasets/visium-spatial-gene-expression-mesenteric-artery-pm5tasjki4cqziic0000/
- Technology: Visium
- Organism: human
- Tissue: mesenteric artery
- Modality: RNA
- Observations (spots): 701
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE293427
- Publication: https://doi.org/10.1126/scitranslmed.adu3761
- Collections: [geo-gse293427](/collections/md/7.md#geo-gse293427)
- Load: `Catalog().dataset("Pm5TAsJkI4CQZiIc0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-lql0yezktpic0ggc0000"></a>
## Human pancreas

- uid: `LQl0yeZKtPIC0gGC0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-lql0yezktpic0ggc0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Modality: RNA
- Observations (spots): 3,728
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296626
- Publication: https://doi.org/10.1101/2025.05.19.654940
- Collections: [geo-gse296626](/collections/md/0.md#geo-gse296626)
- Load: `Catalog().dataset("LQl0yeZKtPIC0gGC0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-kvfcomkaicuzmls60000"></a>
## Mouse colon

- uid: `KVfcoMKAIcUZmls60000`
- Page: /datasets/visium-spatial-gene-expression-colon-kvfcomkaicuzmls60000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colorectal cancer
- Modality: RNA
- Observations (spots): 1,947
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE284989
- Publication: https://doi.org/10.3389/fonc.2025.1549237
- Collections: [geo-gse284989](/collections/md/1.md#geo-gse284989)
- Load: `Catalog().dataset("KVfcoMKAIcUZmls60000").to_sdata()`


<a id="visium-spatial-gene-expression-ilium-kdnzcz81vsgb4nkn0001"></a>
## Human ilium

- uid: `kdNzCz81vsgB4nkn0001`
- Page: /datasets/visium-spatial-gene-expression-ilium-kdnzcz81vsgb4nkn0001/
- Technology: Visium
- Organism: human
- Tissue: ilium
- Modality: RNA
- Observations (spots): 228
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE281317
- Publication: https://doi.org/10.1038/s41586-025-09399-9
- Collections: [geo-gse281317](/collections/md/6.md#geo-gse281317)
- Load: `Catalog().dataset("kdNzCz81vsgB4nkn0001").to_sdata()`


<a id="visium-spatial-gene-expression-brain-7m7uuybejvgf6cyi0000"></a>
## Mouse brain

- uid: `7M7uuYbEjvgf6CyI0000`
- Page: /datasets/visium-spatial-gene-expression-brain-7m7uuybejvgf6cyi0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: traumatic brain injury
- Modality: RNA
- Observations (spots): 2,717
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313407
- Publication: https://doi.org/10.1177/08977151251390528
- Collections: [geo-gse313407](/collections/md/3.md#geo-gse313407)
- Load: `Catalog().dataset("7M7uuYbEjvgf6CyI0000").to_sdata()`


<a id="visium-spatial-gene-expression-hypothalamus-rsmxic3eri8kqtsp0000"></a>
## Human hypothalamus

- uid: `rSmXiC3ERi8KQtSp0000`
- Page: /datasets/visium-spatial-gene-expression-hypothalamus-rsmxic3eri8kqtsp0000/
- Technology: Visium
- Organism: human
- Tissue: hypothalamus
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE280316
- Collections: [geo-gse280316](/collections/md/5.md#geo-gse280316)
- Load: `Catalog().dataset("rSmXiC3ERi8KQtSp0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-zobmvktkzpsrbi5y0000"></a>
## Human brain

- uid: `ZobmVKTkZpSRBI5y0000`
- Page: /datasets/visium-spatial-gene-expression-brain-zobmvktkzpsrbi5y0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 1,639
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9497617
- Collections: [geo-gse318562](/collections/md/3.md#geo-gse318562)
- Load: `Catalog().dataset("ZobmVKTkZpSRBI5y0000").to_sdata()`


<a id="visium-spatial-gene-expression-adrenal-gland-6unmzyymhd1obijk0000"></a>
## Human adrenal gland

- uid: `6unMzyYmhD1OBijk0000`
- Page: /datasets/visium-spatial-gene-expression-adrenal-gland-6unmzyymhd1obijk0000/
- Technology: Visium
- Organism: human
- Tissue: adrenal gland
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8028753
- Collections: [geo-gse253850](/collections/md/d.md#geo-gse253850)
- Load: `Catalog().dataset("6unMzyYmhD1OBijk0000").to_sdata()`


<a id="visium-spatial-gene-expression-ectocervix-qroa93zuyxbsgj9x0000"></a>
## Human ectocervix

- uid: `QROA93ZUyXbsGj9x0000`
- Page: /datasets/visium-spatial-gene-expression-ectocervix-qroa93zuyxbsgj9x0000/
- Technology: Visium
- Organism: human
- Tissue: ectocervix
- Condition: HIV infectious disease
- Modality: RNA
- Observations (spots): 679
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8811064
- Collections: [geo-gse290350](/collections/md/0.md#geo-gse290350)
- Load: `Catalog().dataset("QROA93ZUyXbsGj9x0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-oyhavyikvuzemhpn0000"></a>
## Mouse intestine

- uid: `OyHAVYiKVUzEmHpn0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-oyhavyikvuzemhpn0000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 4,389
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
- Publication: https://doi.org/10.1038/s41586-024-08216-z
- Collections: [geo-gse245274](/collections/md/1.md#geo-gse245274)
- Load: `Catalog().dataset("OyHAVYiKVUzEmHpn0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-70wp4pm6uqr70nhk0000"></a>
## Human liver

- uid: `70Wp4Pm6UQR70nhK0000`
- Page: /datasets/visium-spatial-gene-expression-liver-70wp4pm6uqr70nhk0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,956
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8452848
- Collections: [geo-gse274557](/collections/md/1.md#geo-gse274557)
- Load: `Catalog().dataset("70Wp4Pm6UQR70nhK0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-hflxkxv6xhcedhzx0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `hFLxkxV6xHcEdHZX0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-hflxkxv6xhcedhzx0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("hFLxkxV6xHcEdHZX0000").to_sdata()`


<a id="visium-spatial-gene-expression-nasopharynx-glqij8objqmqblo70000"></a>
## Human nasopharynx

- uid: `GLqIJ8ObjQmqBlO70000`
- Page: /datasets/visium-spatial-gene-expression-nasopharynx-glqij8objqmqblo70000/
- Technology: Visium
- Organism: human
- Tissue: nasopharynx
- Condition: nasopharyngeal carcinoma
- Modality: RNA
- Observations (spots): 1,570
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299776
- Publication: https://doi.org/10.1038/s41467-025-61597-1
- Load: `Catalog().dataset("GLqIJ8ObjQmqBlO70000").to_sdata()`


<a id="visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-loqhcvhsgmjw1hy80000"></a>
## Human synovial membrane of synovial joint

- uid: `loqhcvhsGmJw1hy80000`
- Page: /datasets/visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-loqhcvhsgmjw1hy80000/
- Technology: Visium
- Organism: human
- Tissue: synovial membrane of synovial joint
- Modality: RNA
- Observations (spots): 1,961
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347797
- Collections: [geo-gse347797](/collections/md/b.md#geo-gse347797)
- Load: `Catalog().dataset("loqhcvhsGmJw1hy80000").to_sdata()`


<a id="merfish-brain-gvrhl5jvwizpwxtw0000"></a>
## Mouse brain

- uid: `gVRhl5jVWIZpwxtw0000`
- Page: /datasets/merfish-brain-gvrhl5jvwizpwxtw0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 28,795
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("gVRhl5jVWIZpwxtw0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-jbt6nrqtzxt54scd0000"></a>
## Human kidney

- uid: `jbT6NRQTZxT54sCd0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-jbt6nrqtzxt54scd0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 57,816
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-04-12_17h01m53s
- Load: `Catalog().dataset("jbT6NRQTZxT54sCd0000").to_sdata()`


<a id="10x-xenium-lung-1orpyvsew8yb4yuw0000"></a>
## Mouse lung

- uid: `1orPyVsew8YB4yUw0000`
- Page: /datasets/10x-xenium-lung-1orpyvsew8yb4yuw0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lung
- Condition: colon adenocarcinoma
- Modality: RNA
- Observations (cells): 352,913
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319123
- Load: `Catalog().dataset("1orPyVsew8YB4yUw0000").to_sdata()`


<a id="mibi-tof-breast-byuasxurdsnsiu1a0000"></a>
## Human breast

- uid: `ByuASxURdSNsiu1A0000`
- Page: /datasets/mibi-tof-breast-byuasxurdsnsiu1a0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,016
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("ByuASxURdSNsiu1A0000").to_sdata()`


<a id="mibi-tof-breast-fvww7vmctskacmzd0000"></a>
## Human breast

- uid: `FvwW7vmCtskacMzd0000`
- Page: /datasets/mibi-tof-breast-fvww7vmctskacmzd0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,116
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("FvwW7vmCtskacMzd0000").to_sdata()`


<a id="vizgen-merscope-embryo-pfnjf3vyvwrlobwb0000"></a>
## Mouse embryo

- uid: `PFNjf3VyvWRLoBWb0000`
- Page: /datasets/vizgen-merscope-embryo-pfnjf3vyvwrlobwb0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: embryo
- Modality: RNA
- Observations (cells): 219,525
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE247450
- Publication: https://doi.org/10.1161/CIRCRESAHA.123.323956
- Load: `Catalog().dataset("PFNjf3VyvWRLoBWb0000").to_sdata()`


<a id="10x-xenium-pancreas-umbil1qgqhrpaw9v0000"></a>
## Mouse pancreas

- uid: `UmBIL1qgqhrpaw9v0000`
- Page: /datasets/10x-xenium-pancreas-umbil1qgqhrpaw9v0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (cells): 59,145
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341984
- Load: `Catalog().dataset("UmBIL1qgqhrpaw9v0000").to_sdata()`


<a id="10x-xenium-dorsolateral-prefrontal-cortex-j1rrporbpsvkmqt80000"></a>
## Human dorsolateral prefrontal cortex

- uid: `j1rrporBPSvKmQT80000`
- Page: /datasets/10x-xenium-dorsolateral-prefrontal-cortex-j1rrporbpsvkmqt80000/
- Technology: 10x Xenium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (cells): 66,560
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307404
- Load: `Catalog().dataset("j1rrporBPSvKmQT80000").to_sdata()`