# SpatialData-DB datasets, shard a6

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-heart-nwe2y4trfo47ddig0000"></a>
## Human heart

- uid: `NwE2y4TRfO47dDIG0000`
- Page: /datasets/visium-spatial-gene-expression-heart-nwe2y4trfo47ddig0000/
- Technology: Visium
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 4,235
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/human-heart-1-standard-1-0-0
- Load: `Catalog().dataset("NwE2y4TRfO47dDIG0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-hryzjbyxm1lvvuxm0000"></a>
## Human colon

- uid: `Hryzjbyxm1LVVuxm0000`
- Page: /datasets/visium-spatial-gene-expression-colon-hryzjbyxm1lvvuxm0000/
- Technology: Visium
- Organism: human
- Tissue: colon
- Condition: adenocarcinoma
- Modality: RNA
- Observations (spots): 2,261
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211895
- Publication: https://doi.org/10.1016/j.crmeth.2022.100340
- Collections: [geo-gse211895](/collections/md/d.md#geo-gse211895)
- Load: `Catalog().dataset("Hryzjbyxm1LVVuxm0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-xmrcp8ogfrzf2cz80000"></a>
## Mouse spinal cord

- uid: `XmRcP8OgFrZF2cZ80000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-xmrcp8ogfrzf2cz80000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 62
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("XmRcP8OgFrZF2cZ80000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-jynfcr8djyr2dwb20000"></a>
## Human brain

- uid: `JynFCR8DjyR2DwB20000`
- Page: /datasets/visium-spatial-gene-expression-brain-jynfcr8djyr2dwb20000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (spots): 2,743
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://academic.oup.com/neuro-oncology/article/24/Supplement_1/i45/6600572
- Publication: https://doi.org/10.1093/neuonc/noac079.165
- Collections: [doi-10-1093-neuonc-noac079-165](/collections/md/6.md#doi-10-1093-neuonc-noac079-165)
- Load: `Catalog().dataset("JynFCR8DjyR2DwB20000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-96dwxqaxkextdzjr0000"></a>
## Mouse brain

- uid: `96DwXqAXKeXtDzjR0000`
- Page: /datasets/visium-spatial-gene-expression-brain-96dwxqaxkextdzjr0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,120
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41587-023-01937-y
- Publication: https://doi.org/10.1038/s41587-023-01937-y
- Collections: [doi-10-1038-s41587-023-01937-y](/collections/md/b.md#doi-10-1038-s41587-023-01937-y)
- Load: `Catalog().dataset("96DwXqAXKeXtDzjR0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-c5wmvhjodjungsna0000"></a>
## Mouse intestine

- uid: `C5WMvHjoDjUNGsNA0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-c5wmvhjodjungsna0000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 2,152
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s44161-022-00138-1
- Publication: https://doi.org/10.1038/s44161-022-00138-1
- Collections: [doi-10-1038-s44161-022-00138-1](/collections/md/1.md#doi-10-1038-s44161-022-00138-1)
- Load: `Catalog().dataset("C5WMvHjoDjUNGsNA0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-qhmw8xknuqgdu80b0000"></a>
## Human skin of body

- uid: `QHMw8xKNUQgdU80B0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-qhmw8xknuqgdu80b0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: psoriasis
- Modality: RNA
- Observations (spots): 585
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("QHMw8xKNUQgdU80B0000").to_sdata()`


<a id="visium-spatial-gene-expression-craniocervical-region-xmpljq3xnx5sbcxr0000"></a>
## Human craniocervical region

- uid: `XMPlJQ3XNx5sBcXR0000`
- Page: /datasets/visium-spatial-gene-expression-craniocervical-region-xmpljq3xnx5sbcxr0000/
- Technology: Visium
- Organism: human
- Tissue: craniocervical region
- Condition: head and neck squamous cell carcinoma
- Modality: RNA
- Observations (spots): 1,853
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE181300
- Publication: https://doi.org/10.1136/jitc-2022-004832
- Collections: [geo-gse181300](/collections/md/4.md#geo-gse181300)
- Load: `Catalog().dataset("XMPlJQ3XNx5sBcXR0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-42vpalrcqgrxizkf0000"></a>
## Human pancreas

- uid: `42VpalrcqGRXIzKf0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-42vpalrcqgrxizkf0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,572
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("42VpalrcqGRXIzKf0000").to_sdata()`


<a id="visium-spatial-gene-expression-anterior-cingulate-cortex-greodwx77pzqphnu0000"></a>
## Human anterior cingulate cortex

- uid: `GreodwX77pZQphnU0000`
- Page: /datasets/visium-spatial-gene-expression-anterior-cingulate-cortex-greodwx77pzqphnu0000/
- Technology: Visium
- Organism: human
- Tissue: anterior cingulate cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296789
- Publication: https://doi.org/10.1016/j.celrep.2026.117500
- Collections: [geo-gse296789](/collections/md/0.md#geo-gse296789)
- Load: `Catalog().dataset("GreodwX77pZQphnU0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-bxxazoakeyo47rdu0000"></a>
## Human brain

- uid: `BXXaZOAKeyO47Rdu0000`
- Page: /datasets/visium-spatial-gene-expression-brain-bxxazoakeyo47rdu0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: brain glioma
- Modality: RNA
- Observations (spots): 4,029
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242352
- Publication: https://doi.org/10.1038/s41467-025-59805-z
- Collections: [geo-gse242352](/collections/md/d.md#geo-gse242352)
- Load: `Catalog().dataset("BXXaZOAKeyO47Rdu0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-2kmq7ph1byv04lat0000"></a>
## Human breast

- uid: `2kmq7Ph1BYv04lat0000`
- Page: /datasets/visium-spatial-gene-expression-breast-2kmq7ph1byv04lat0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 850
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210616
- Publication: https://doi.org/10.1158/0008-5472.CAN-22-2682
- Collections: [geo-gse210616](/collections/md/8.md#geo-gse210616)
- Load: `Catalog().dataset("2kmq7Ph1BYv04lat0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-g75kwqbuwwhmgivr0000"></a>
## Human prostate gland

- uid: `g75KwQbuWwHMgIVr0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-g75kwqbuwwhmgivr0000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 1,586
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("g75KwQbuWwHMgIVr0000").to_sdata()`


<a id="visium-spatial-gene-expression-temporal-cortex-ka7yj7vdo00qmdfa0000"></a>
## Human temporal cortex

- uid: `kA7YJ7VDO00Qmdfa0000`
- Page: /datasets/visium-spatial-gene-expression-temporal-cortex-ka7yj7vdo00qmdfa0000/
- Technology: Visium
- Organism: human
- Tissue: temporal cortex
- Condition: Lewy body dementia
- Modality: RNA
- Observations (spots): 11,002
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE293896
- Publication: https://doi.org/10.1007/s00401-026-02981-z
- Collections: [geo-gse293896](/collections/md/f.md#geo-gse293896)
- Load: `Catalog().dataset("kA7YJ7VDO00Qmdfa0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-53kwikiy9ajo6o640000"></a>
## Macaque colon

- uid: `53KwIKiy9ajO6o640000`
- Page: /datasets/visium-spatial-gene-expression-colon-53kwikiy9ajo6o640000/
- Technology: Visium
- Organism: macaque
- Tissue: colon
- Condition: simian immunodeficiency virus infection
- Modality: RNA
- Observations (spots): 2,254
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341607
- Publication: https://doi.org/10.3389/fimmu.2026.1862864
- Collections: [geo-gse341607](/collections/md/3.md#geo-gse341607)
- Load: `Catalog().dataset("53KwIKiy9ajO6o640000").to_sdata()`


<a id="vizgen-merscope-brain-bmc9xft47qiqjb1v0000"></a>
## Mouse brain

- uid: `Bmc9xfT47Qiqjb1v0000`
- Page: /datasets/vizgen-merscope-brain-bmc9xft47qiqjb1v0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 11,742
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("Bmc9xfT47Qiqjb1v0000").to_sdata()`


<a id="10x-xenium-breast-dnkj7pgfj8svgwaf0001"></a>
## Human breast

- uid: `dNKJ7pgFj8SVgwaf0001`
- Page: /datasets/10x-xenium-breast-dnkj7pgfj8svgwaf0001/
- Technology: 10x Xenium
- Organism: human
- Tissue: breast
- Modality: RNA
- Observations (cells): 380,739
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/xenium-ffpe-human-breast-biomarkers
- Collections: [10x-xenium-ffpe-human-breast-biomarkers](/collections/md/3.md#10x-xenium-ffpe-human-breast-biomarkers)
- Load: `Catalog().dataset("dNKJ7pgFj8SVgwaf0001").to_sdata()`


<a id="visium-spatial-gene-expression-skeletal-muscle-tissue-c4f9vruzfoghbbdt0000"></a>
## Mouse skeletal muscle tissue

- uid: `C4F9VrUZfogHbBDT0000`
- Page: /datasets/visium-spatial-gene-expression-skeletal-muscle-tissue-c4f9vruzfoghbbdt0000/
- Technology: Visium
- Organism: mouse
- Tissue: skeletal muscle tissue
- Modality: RNA
- Observations (spots): 1,939
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310921
- Collections: [geo-gse310921](/collections/md/b.md#geo-gse310921)
- Load: `Catalog().dataset("C4F9VrUZfogHbBDT0000").to_sdata()`


<a id="10x-xenium-brain-aqexm24yantxhsfw0000"></a>
## Mouse brain

- uid: `AQeXm24yAntxHSfW0000`
- Page: /datasets/10x-xenium-brain-aqexm24yantxhsfw0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (cells): 39,076
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE266971
- Publication: https://doi.org/10.1016/j.ccell.2024.08.012
- Load: `Catalog().dataset("AQeXm24yAntxHSfW0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-m1v5tkxizvklnfs40000"></a>
## Mouse liver

- uid: `m1v5TkXIzvkLNFS40000`
- Page: /datasets/visium-spatial-gene-expression-liver-m1v5tkxizvklnfs40000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 1,646
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5764414
- Collections: [geo-gse192741](/collections/md/4.md#geo-gse192741)
- Load: `Catalog().dataset("m1v5TkXIzvkLNFS40000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-sw3ihiaghxsvouej0000"></a>
## Human lung

- uid: `sw3ihIagHXsvoueJ0000`
- Page: /datasets/visium-spatial-gene-expression-lung-sw3ihiaghxsvouej0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: sarcoidosis
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607
- Collections: [geo-gse288607](/collections/md/6.md#geo-gse288607)
- Load: `Catalog().dataset("sw3ihIagHXsvoueJ0000").to_sdata()`


<a id="10x-xenium-vestibulocochlear-nerve-asjvpqpvqtaeznj30000"></a>
## Human vestibulocochlear nerve

- uid: `AsJvpQpvQtaeZnJ30000`
- Page: /datasets/10x-xenium-vestibulocochlear-nerve-asjvpqpvqtaeznj30000/
- Technology: 10x Xenium
- Organism: human
- Tissue: vestibulocochlear nerve
- Condition: acoustic neuroma
- Modality: RNA
- Observations (cells): 148,575
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE345691
- Load: `Catalog().dataset("AsJvpQpvQtaeZnJ30000").to_sdata()`


<a id="mibi-tof-lymph-node-ks3vlbdk9ec197i70000"></a>
## Human lymph node

- uid: `KS3vlBDk9ec197i70000`
- Page: /datasets/mibi-tof-lymph-node-ks3vlbdk9ec197i70000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,723
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("KS3vlBDk9ec197i70000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-s73jznuusovduyz30000"></a>
## Human lymph node

- uid: `s73jzNuUSovDuYz30000`
- Page: /datasets/phenocycler-fusion-lymph-node-s73jznuusovduyz30000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: protein
- Observations (cells): 11,520
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("s73jzNuUSovDuYz30000").to_sdata()`


<a id="mibi-tof-breast-v5nwkepckp771ujp0000"></a>
## Human breast

- uid: `v5NwKepCKp771uJp0000`
- Page: /datasets/mibi-tof-breast-v5nwkepckp771ujp0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 5,138
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("v5NwKepCKp771uJp0000").to_sdata()`