# SpatialData-DB datasets, shard a4

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-rpfh8vns5b8x2ktc0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `rpFh8VNs5b8X2KTc0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-rpfh8vns5b8x2ktc0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: major depressive disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("rpFh8VNs5b8X2KTc0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-36lkgspsdsxom7bx0000"></a>
## Macaque colon

- uid: `36lkGSPsdSXoM7bx0000`
- Page: /datasets/visium-spatial-gene-expression-colon-36lkgspsdsxom7bx0000/
- Technology: Visium
- Organism: macaque
- Tissue: colon
- Condition: simian immunodeficiency virus infection
- Modality: RNA
- Observations (spots): 1,942
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341607
- Publication: https://doi.org/10.3389/fimmu.2026.1862864
- Collections: [geo-gse341607](/collections/md/3.md#geo-gse341607)
- Load: `Catalog().dataset("36lkGSPsdSXoM7bx0000").to_sdata()`


<a id="visium-hd-caudate-lobe-of-liver-fvj5oqtkecvgkkt50000"></a>
## Human caudate lobe of liver

- uid: `Fvj5OQtkecvGKkT50000`
- Page: /datasets/visium-hd-caudate-lobe-of-liver-fvj5oqtkecvgkkt50000/
- Technology: Visium HD
- Organism: human
- Tissue: caudate lobe of liver
- Condition: liver disorder
- Modality: RNA
- Observations (bins): 466,284
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311383
- Publication: https://doi.org/10.1038/s41597-026-07597-2
- Collections: [geo-gse311383](/collections/md/9.md#geo-gse311383)
- Load: `Catalog().dataset("Fvj5OQtkecvGKkT50000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-vx3ap7i2mp8abzxu0000"></a>
## Mouse lung

- uid: `Vx3aP7i2MP8abzxU0000`
- Page: /datasets/visium-spatial-gene-expression-lung-vx3ap7i2mp8abzxu0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: mycobacterial infectious disease
- Modality: RNA
- Observations (spots): 3,170
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297621
- Publication: https://doi.org/10.1038/s41467-025-61791-1
- Collections: [geo-gse297621](/collections/md/7.md#geo-gse297621)
- Load: `Catalog().dataset("Vx3aP7i2MP8abzxU0000").to_sdata()`


<a id="spatial-transcriptomics-brain-dz0ah4jt09icxekt0000"></a>
## Mouse brain

- uid: `dZ0AH4JT09iCXEKt0000`
- Page: /datasets/spatial-transcriptomics-brain-dz0ah4jt09icxekt0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 269
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("dZ0AH4JT09iCXEKt0000").to_sdata()`


<a id="spatial-transcriptomics-skin-of-body-lkkjhy77ikfwntnc0000"></a>
## Human skin of body

- uid: `LkKjHY77IKfWntNC0000`
- Page: /datasets/spatial-transcriptomics-skin-of-body-lkkjhy77ikfwntnc0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: skin of body
- Condition: skin squamous cell carcinoma
- Modality: RNA
- Observations (spots): 521
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7391009/
- Publication: https://doi.org/10.1016/j.cell.2020.05.039
- Collections: [doi-10-1016-j-cell-2020-05-039](/collections/md/0.md#doi-10-1016-j-cell-2020-05-039)
- Load: `Catalog().dataset("LkKjHY77IKfWntNC0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-f7yhxldrhs32b8fb0000"></a>
## Human brain

- uid: `f7yHXLdrhs32b8fb0000`
- Page: /datasets/visium-spatial-gene-expression-brain-f7yhxldrhs32b8fb0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (spots): 3,620
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://academic.oup.com/neuro-oncology/article/24/Supplement_1/i45/6600572
- Publication: https://doi.org/10.1093/neuonc/noac079.165
- Collections: [doi-10-1093-neuonc-noac079-165](/collections/md/6.md#doi-10-1093-neuonc-noac079-165)
- Load: `Catalog().dataset("f7yHXLdrhs32b8fb0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-n1vlfkqgxz1o6swj0000"></a>
## Human basal ganglion

- uid: `n1vLfKQGXZ1o6sWJ0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-n1vlfkqgxz1o6swj0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 56,477
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("n1vLfKQGXZ1o6sWJ0000").to_sdata()`


<a id="visium-spatial-gene-expression-uterus-ygntsfmf2uyq1m140000"></a>
## Mouse uterus

- uid: `YgntSfMF2UYQ1M140000`
- Page: /datasets/visium-spatial-gene-expression-uterus-ygntsfmf2uyq1m140000/
- Technology: Visium
- Organism: mouse
- Tissue: uterus
- Modality: RNA
- Observations (spots): 417
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269332
- Publication: https://doi.org/10.1002/path.6470
- Collections: [geo-gse269332](/collections/md/e.md#geo-gse269332)
- Load: `Catalog().dataset("YgntSfMF2UYQ1M140000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-lhotivyuytqmztw50000"></a>
## Human prostate gland

- uid: `LHOtiVYuyTqmZtw50000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-lhotivyuytqmztw50000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 2,860
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("LHOtiVYuyTqmZtw50000").to_sdata()`


<a id="visium-spatial-gene-expression-locus-ceruleus-ptvbw2zvmlcekovz0000"></a>
## Human locus ceruleus

- uid: `ptVbW2ZVmLcekOVz0000`
- Page: /datasets/visium-spatial-gene-expression-locus-ceruleus-ptvbw2zvmlcekovz0000/
- Technology: Visium
- Organism: human
- Tissue: locus ceruleus
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307866
- Publication: https://doi.org/10.1101/2025.10.29.685354
- Collections: [geo-gse307866](/collections/md/9.md#geo-gse307866)
- Load: `Catalog().dataset("ptVbW2ZVmLcekOVz0000").to_sdata()`


<a id="mibi-tof-breast-mytpmmfvjuksaivi0000"></a>
## Human breast

- uid: `mYTPMMFvjUksAiVi0000`
- Page: /datasets/mibi-tof-breast-mytpmmfvjuksaivi0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,894
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("mYTPMMFvjUksAiVi0000").to_sdata()`


<a id="visium-spatial-gene-expression-oropharynx-25ad8gsvjakev4th0000"></a>
## Human oropharynx

- uid: `25AD8gsvJAKeV4Th0000`
- Page: /datasets/visium-spatial-gene-expression-oropharynx-25ad8gsvjakev4th0000/
- Technology: Visium
- Organism: human
- Tissue: oropharynx
- Condition: head and neck squamous cell carcinoma
- Modality: RNA
- Observations (spots): 2,606
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301720
- Publication: https://doi.org/10.1158/1078-0432.CCR-25-2300
- Collections: [geo-gse301720](/collections/md/5.md#geo-gse301720)
- Load: `Catalog().dataset("25AD8gsvJAKeV4Th0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-jonmobq324gmmtbf0000"></a>
## Mouse breast

- uid: `JonMOBQ324gMmtBf0000`
- Page: /datasets/visium-spatial-gene-expression-breast-jonmobq324gmmtbf0000/
- Technology: Visium
- Organism: mouse
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 4,807
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Collections: [geo-gse299631](/collections/md/e.md#geo-gse299631)
- Load: `Catalog().dataset("JonMOBQ324gMmtBf0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-tpv25rnd5v4t9pnx0000"></a>
## Mouse brain

- uid: `TPV25RnD5V4T9PNX0000`
- Page: /datasets/visium-spatial-gene-expression-brain-tpv25rnd5v4t9pnx0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: Alzheimer disease
- Modality: RNA
- Observations (spots): 3,709
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282203
- Publication: https://doi.org/10.64898/2026.01.26.701799
- Collections: [geo-gse282203](/collections/md/3.md#geo-gse282203)
- Load: `Catalog().dataset("TPV25RnD5V4T9PNX0000").to_sdata()`


<a id="visium-spatial-gene-expression-thymus-nhpeuxz5lmt1i1ax0000"></a>
## Mouse thymus

- uid: `NhpEUXZ5lMt1i1Ax0000`
- Page: /datasets/visium-spatial-gene-expression-thymus-nhpeuxz5lmt1i1ax0000/
- Technology: Visium
- Organism: mouse
- Tissue: thymus
- Modality: RNA
- Observations (spots): 1,815
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7823011
- Collections: [geo-gse244641](/collections/md/f.md#geo-gse244641)
- Load: `Catalog().dataset("NhpEUXZ5lMt1i1Ax0000").to_sdata()`


<a id="mibi-tof-breast-ah8xwrvwtpogwd4y0000"></a>
## Human breast

- uid: `Ah8XwRVWtpOgwd4y0000`
- Page: /datasets/mibi-tof-breast-ah8xwrvwtpogwd4y0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,452
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("Ah8XwRVWtpOgwd4y0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-v1wkk58nx2xetl3x0000"></a>
## Mouse liver

- uid: `V1WKK58nx2xETL3x0000`
- Page: /datasets/visium-spatial-gene-expression-liver-v1wkk58nx2xetl3x0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 2,868
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7116327
- Collections: [geo-gse228195](/collections/md/1.md#geo-gse228195)
- Load: `Catalog().dataset("V1WKK58nx2xETL3x0000").to_sdata()`


<a id="10x-xenium-coronary-artery-ayjnfkpy2hezi1av0000"></a>
## Human coronary artery

- uid: `AYJnFkpY2hEzi1aV0000`
- Page: /datasets/10x-xenium-coronary-artery-ayjnfkpy2hezi1av0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: coronary artery
- Condition: atherosclerosis
- Modality: RNA
- Observations (cells): 7,403
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE314854
- Publication: https://doi.org/10.1126/science.adx1736
- Load: `Catalog().dataset("AYJnFkpY2hEzi1aV0000").to_sdata()`


<a id="visium-spatial-gene-expression-hippocampal-formation-o7ywtecozzfuunkr0000"></a>
## Human hippocampal formation

- uid: `o7YWTEcOZZfuuNKr0000`
- Page: /datasets/visium-spatial-gene-expression-hippocampal-formation-o7ywtecozzfuunkr0000/
- Technology: Visium
- Organism: human
- Tissue: hippocampal formation
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE264692
- Collections: [geo-gse264692](/collections/md/2.md#geo-gse264692)
- Load: `Catalog().dataset("o7YWTEcOZZfuuNKr0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-n9coqcpd5r4xkpwv0000"></a>
## Macaque basal ganglion

- uid: `N9CoQCPd5R4Xkpwv0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-n9coqcpd5r4xkpwv0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 18,091
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("N9CoQCPd5R4Xkpwv0000").to_sdata()`


<a id="mibi-tof-breast-w1dwemfzpddwsx9a0000"></a>
## Human breast

- uid: `w1DwEmfzPddwsx9a0000`
- Page: /datasets/mibi-tof-breast-w1dwemfzpddwsx9a0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,840
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("w1DwEmfzPddwsx9a0000").to_sdata()`


<a id="merfish-brain-ddcp1khyx1c3nvkm0000"></a>
## Mouse brain

- uid: `DDcp1kHyX1c3NvKm0000`
- Page: /datasets/merfish-brain-ddcp1khyx1c3nvkm0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 79,997
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-4.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-4](/collections/md/4.md#abc-zhuang-abca-4)
- Load: `Catalog().dataset("DDcp1kHyX1c3NvKm0000").to_sdata()`


<a id="mibi-tof-skin-of-body-inn63kztvx0okkgh0000"></a>
## Human skin of body

- uid: `INN63kZtvX0OkKgH0000`
- Page: /datasets/mibi-tof-skin-of-body-inn63kztvx0okkgh0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: skin of body
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,237
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("INN63kZtvX0OkKgH0000").to_sdata()`


<a id="mibi-tof-lymph-node-dn1gf642cnuntnh20000"></a>
## Human lymph node

- uid: `Dn1gF642cNunTNH20000`
- Page: /datasets/mibi-tof-lymph-node-dn1gf642cnuntnh20000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,359
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("Dn1gF642cNunTNH20000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-5tndsiplsey4nglk0000"></a>
## Human kidney

- uid: `5TNDSipLSEy4Nglk0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-5tndsiplsey4nglk0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 15,568
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-06-27_00h53m58s
- Load: `Catalog().dataset("5TNDSipLSEy4Nglk0000").to_sdata()`


<a id="mibi-tof-breast-rdqvuguipmlxwynf0000"></a>
## Human breast

- uid: `RDQVuGuiPMlxWYNf0000`
- Page: /datasets/mibi-tof-breast-rdqvuguipmlxwynf0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 751
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("RDQVuGuiPMlxWYNf0000").to_sdata()`


<a id="mibi-tof-unknown-hvrvoaec36wy90oe0000"></a>
## Human unknown

- uid: `hvRvoAEc36wy90oe0000`
- Page: /datasets/mibi-tof-unknown-hvrvoaec36wy90oe0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: unknown
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,926
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("hvRvoAEc36wy90oe0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-skin-of-body-aywp8ozkzmazv71k0000"></a>
## Human skin of body

- uid: `AyWp8OZKzMaZv71k0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-skin-of-body-aywp8ozkzmazv71k0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: skin of body
- Condition: melanoma
- Modality: Metabolomics
- Observations: 214,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-05-24_10h15m21s
- Load: `Catalog().dataset("AyWp8OZKzMaZv71k0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-u3etwxzy04jkygre0000"></a>
## Human lymph node

- uid: `u3EtWxZY04jkyGRE0000`
- Page: /datasets/phenocycler-fusion-lymph-node-u3etwxzy04jkygre0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: marginal zone lymphoma
- Modality: protein
- Observations (cells): 15,263
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("u3EtWxZY04jkyGRE0000").to_sdata()`


<a id="vizgen-merscope-brain-6mozvjiftktp8rev0000"></a>
## Mouse brain

- uid: `6MoZVJiFTktP8ReV0000`
- Page: /datasets/vizgen-merscope-brain-6mozvjiftktp8rev0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 90,244
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269617
- Load: `Catalog().dataset("6MoZVJiFTktP8ReV0000").to_sdata()`