# SpatialData-DB datasets, shard 9b

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-brain-utn4gs2en65k8xym0000"></a>
## Mouse brain

- uid: `UTn4Gs2eN65k8Xym0000`
- Page: /datasets/visium-spatial-gene-expression-brain-utn4gs2en65k8xym0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: traumatic brain injury
- Modality: RNA
- Observations (spots): 4,360
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319409
- Publication: https://doi.org/10.1186/s40478-025-02219-1
- Collections: [geo-gse319409](/collections/md/8.md#geo-gse319409)
- Load: `Catalog().dataset("UTn4Gs2eN65k8Xym0000").to_sdata()`


<a id="10x-xenium-brain-vll7y1pj0tbhevld0000"></a>
## Mouse brain

- uid: `vlL7Y1pJ0tbhevLD0000`
- Page: /datasets/10x-xenium-brain-vll7y1pj0tbhevld0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 162,033
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/fresh-frozen-mouse-brain-replicates-1-standard
- Load: `Catalog().dataset("vlL7Y1pJ0tbhevLD0000").to_sdata()`


<a id="visium-spatial-gene-expression-dental-pulp-ov2imx5y1kcxho2r0000"></a>
## Human dental pulp

- uid: `Ov2imX5y1kCxHo2R0000`
- Page: /datasets/visium-spatial-gene-expression-dental-pulp-ov2imx5y1kcxho2r0000/
- Technology: Visium
- Organism: human
- Tissue: dental pulp
- Condition: pulpitis
- Modality: RNA
- Observations (spots): 1,091
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE322883
- Collections: [geo-gse322883](/collections/md/6.md#geo-gse322883)
- Load: `Catalog().dataset("Ov2imX5y1kCxHo2R0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-soctoeiputj648gl0000"></a>
## Human brain

- uid: `SOCToEipUTj648Gl0000`
- Page: /datasets/visium-spatial-gene-expression-brain-soctoeiputj648gl0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: embryonal tumor with multilayered rosettes
- Modality: RNA
- Observations (spots): 3,814
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE224477
- Publication: https://doi.org/10.1038/s41467-025-60442-9
- Collections: [geo-gse224477](/collections/md/1.md#geo-gse224477)
- Load: `Catalog().dataset("SOCToEipUTj648Gl0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-spxmbn3quowdsh000000"></a>
## Human skin of body

- uid: `spXMBn3quOwDSh000000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-spxmbn3quowdsh000000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: melanoma
- Modality: RNA
- Observations (spots): 3,039
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203612
- Publication: https://doi.org/10.1038/s41588-022-01141-9
- Collections: [geo-gse203612](/collections/md/8.md#geo-gse203612)
- Load: `Catalog().dataset("spXMBn3quOwDSh000000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-vu5vk2rwptxd25qe0000"></a>
## Human kidney

- uid: `Vu5vK2rWpTxd25qe0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-vu5vk2rwptxd25qe0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: pauci-immune glomerulonephritis with ANCA
- Modality: RNA
- Observations (spots): 537
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250138
- Publication: https://doi.org/10.1038/s41467-024-52525-w
- Collections: [geo-gse250138](/collections/md/e.md#geo-gse250138)
- Load: `Catalog().dataset("Vu5vK2rWpTxd25qe0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-sims9i6yqakl4sa30000"></a>
## Human basal ganglion

- uid: `SimS9I6YQAKl4sA30000`
- Page: /datasets/vizgen-merscope-basal-ganglion-sims9i6yqakl4sa30000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 20,694
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("SimS9I6YQAKl4sA30000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-zzaebahyqbsaanh50000"></a>
## Mouse lung

- uid: `zZaebaHyqBsAAnH50000`
- Page: /datasets/visium-spatial-gene-expression-lung-zzaebahyqbsaanh50000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Modality: RNA
- Observations (spots): 2,086
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250395
- Publication: https://doi.org/10.1038/s41586-025-08727-3
- Collections: [geo-gse250395](/collections/md/f.md#geo-gse250395)
- Load: `Catalog().dataset("zZaebaHyqBsAAnH50000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-wyxaieaqhxqm8ryz0000"></a>
## Mouse ovary

- uid: `WYXaieaqhxQM8RYz0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-wyxaieaqhxqm8ryz0000/
- Technology: Visium
- Organism: mouse
- Tissue: ovary
- Modality: RNA
- Observations (spots): 841
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE188257
- Publication: https://doi.org/10.1016/j.isci.2022.104819
- Collections: [geo-gse188257](/collections/md/e.md#geo-gse188257)
- Load: `Catalog().dataset("WYXaieaqhxQM8RYz0000").to_sdata()`


<a id="10x-xenium-lung-bbidnn1r2b8cdadj0000"></a>
## Mouse lung

- uid: `BbiDNN1R2B8CdaDJ0000`
- Page: /datasets/10x-xenium-lung-bbidnn1r2b8cdadj0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lung
- Condition: lung cancer
- Modality: RNA
- Observations (cells): 678,432
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9360616
- Collections: [geo-gse313081](/collections/md/e.md#geo-gse313081)
- Load: `Catalog().dataset("BbiDNN1R2B8CdaDJ0000").to_sdata()`


<a id="visium-spatial-gene-expression-bone-tissue-c1j4hj9qoftw42d50000"></a>
## Human bone tissue

- uid: `c1j4hj9QOFtw42d50000`
- Page: /datasets/visium-spatial-gene-expression-bone-tissue-c1j4hj9qoftw42d50000/
- Technology: Visium
- Organism: human
- Tissue: bone tissue
- Condition: estrogen-receptor positive breast cancer
- Modality: RNA
- Observations (spots): 4,102
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298286
- Publication: https://doi.org/10.1158/0008-5472.CAN-25-3161
- Collections: [geo-gse298286](/collections/md/0.md#geo-gse298286)
- Load: `Catalog().dataset("c1j4hj9QOFtw42d50000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-kbxuz1bm2th5ygwy0000"></a>
## Mouse liver

- uid: `kbxuz1bm2TH5Ygwy0000`
- Page: /datasets/visium-spatial-gene-expression-liver-kbxuz1bm2th5ygwy0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 3,364
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318726
- Collections: [geo-gse318726](/collections/md/b.md#geo-gse318726)
- Load: `Catalog().dataset("kbxuz1bm2TH5Ygwy0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-hsrvvlroltx8ozvf0000"></a>
## Human brain

- uid: `HsrVVLROLTX8oZvF0000`
- Page: /datasets/visium-spatial-gene-expression-brain-hsrvvlroltx8ozvf0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 3,623
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE320505
- Publication: https://doi.org/10.1038/s42003-026-09915-1
- Collections: [geo-gse320505](/collections/md/d.md#geo-gse320505)
- Load: `Catalog().dataset("HsrVVLROLTX8oZvF0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fcn6lhoilcn1zpwk0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `FCn6lHOIlCn1ZpWK0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fcn6lhoilcn1zpwk0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("FCn6lHOIlCn1ZpWK0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsal-root-ganglion-dk7o0sbmnnkwjddk0000"></a>
## Crab-eating macaque dorsal root ganglion

- uid: `dk7o0SBMnnkWjDdK0000`
- Page: /datasets/visium-spatial-gene-expression-dorsal-root-ganglion-dk7o0sbmnnkwjddk0000/
- Technology: Visium
- Organism: crab-eating macaque
- Tissue: dorsal root ganglion
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9369742
- Collections: [geo-gse313530](/collections/md/2.md#geo-gse313530)
- Load: `Catalog().dataset("dk7o0SBMnnkWjDdK0000").to_sdata()`


<a id="visium-spatial-gene-expression-placenta-ranhhzb932i9wjux0000"></a>
## Pig placenta

- uid: `rAnhHzB932i9wJux0000`
- Page: /datasets/visium-spatial-gene-expression-placenta-ranhhzb932i9wjux0000/
- Technology: Visium
- Organism: pig
- Tissue: placenta
- Modality: RNA
- Observations (spots): 3,679
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8980983
- Collections: [geo-gse296975](/collections/md/4.md#geo-gse296975)
- Load: `Catalog().dataset("rAnhHzB932i9wJux0000").to_sdata()`


<a id="10x-xenium-lung-byenwx3c2ijzds1e0000"></a>
## Mouse lung

- uid: `ByENwX3C2IJzDs1e0000`
- Page: /datasets/10x-xenium-lung-byenwx3c2ijzds1e0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lung
- Condition: tuberculosis
- Modality: RNA
- Observations (cells): 312,610
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE336209
- Publication: https://doi.org/10.64898/2026.06.25.734601
- Load: `Catalog().dataset("ByENwX3C2IJzDs1e0000").to_sdata()`


<a id="visium-spatial-gene-expression-ectocervix-kjcjr03dlvbekajc0000"></a>
## Human ectocervix

- uid: `kjcjR03dLvBEkaJC0000`
- Page: /datasets/visium-spatial-gene-expression-ectocervix-kjcjr03dlvbekajc0000/
- Technology: Visium
- Organism: human
- Tissue: ectocervix
- Modality: RNA
- Observations (spots): 1,167
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9053848
- Collections: [geo-gse300112](/collections/md/2.md#geo-gse300112)
- Load: `Catalog().dataset("kjcjR03dLvBEkaJC0000").to_sdata()`


<a id="visium-spatial-gene-expression-gray-matter-ak3ghcmhgsndhx160000"></a>
## Human gray matter

- uid: `Ak3GhcMhGsNdHx160000`
- Page: /datasets/visium-spatial-gene-expression-gray-matter-ak3ghcmhgsndhx160000/
- Technology: Visium
- Organism: human
- Tissue: gray matter
- Condition: multiple sclerosis
- Modality: RNA
- Observations (spots): 4,624
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6368822
- Collections: [geo-gse208747](/collections/md/d.md#geo-gse208747)
- Load: `Catalog().dataset("Ak3GhcMhGsNdHx160000").to_sdata()`


<a id="mibi-tof-breast-qigmghqvdoyxdpf10000"></a>
## Human breast

- uid: `QigMGHQVdOyxDPF10000`
- Page: /datasets/mibi-tof-breast-qigmghqvdoyxdpf10000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,227
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("QigMGHQVdOyxDPF10000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-3djmknbhiesuqstc0000"></a>
## Human kidney

- uid: `3DjmknbHiESuQStC0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-3djmknbhiesuqstc0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 7,980
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-01-17_23h48m59s
- Load: `Catalog().dataset("3DjmknbHiESuQStC0000").to_sdata()`


<a id="mibi-tof-brain-kaotrhoyzciy350r0000"></a>
## Human brain

- uid: `KaOtrHOyZciy350R0000`
- Page: /datasets/mibi-tof-brain-kaotrhoyzciy350r0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: brain
- Condition: glioma
- Modality: protein
- Observations: 1,699
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1579
- Collections: [bia-s-biad1579](/collections/md/2.md#bia-s-biad1579)
- Load: `Catalog().dataset("KaOtrHOyZciy350R0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-y33eobq9snb0ypv50000"></a>
## Human lymph node

- uid: `y33eobq9SNB0yPV50000`
- Page: /datasets/phenocycler-fusion-lymph-node-y33eobq9snb0ypv50000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: marginal zone lymphoma
- Modality: protein
- Observations (cells): 17,243
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("y33eobq9SNB0yPV50000").to_sdata()`


<a id="stereo-seq-brain-h8bo5qykr2daxihb0000"></a>
## Mouse brain

- uid: `h8bO5QYKr2DaxIhb0000`
- Page: /datasets/stereo-seq-brain-h8bo5qykr2daxihb0000/
- Technology: Stereo-seq
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations: 39,985
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("h8bO5QYKr2DaxIhb0000").to_sdata()`


<a id="mibi-tof-lymph-node-igtokodjzpjzgkpc0000"></a>
## Human lymph node

- uid: `igtOKoDJZpJzgKpc0000`
- Page: /datasets/mibi-tof-lymph-node-igtokodjzpjzgkpc0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,533
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("igtOKoDJZpJzgKpc0000").to_sdata()`