# SpatialData-DB datasets, shard 97

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-hd-embryo-eavbh5boq5zsibvc0000"></a>
## Mouse embryo

- uid: `eAVBH5BOq5zSibVC0000`
- Page: /datasets/visium-hd-embryo-eavbh5boq5zsibvc0000/
- Technology: Visium HD
- Organism: mouse
- Tissue: embryo
- Modality: RNA
- Observations (bins): 344,024
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-libraries-of-mouse-embryo-4
- Load: `Catalog().dataset("eAVBH5BOq5zSibVC0000").to_sdata()`


<a id="visium-hd-colon-jgv6kursbsab5vni0000"></a>
## Human colon

- uid: `Jgv6kuRSBsaB5VNi0000`
- Page: /datasets/visium-hd-colon-jgv6kursbsab5vni0000/
- Technology: Visium HD
- Organism: human
- Tissue: colon
- Condition: colorectal cancer
- Modality: RNA
- Observations (bins): 541,968
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/platforms/visium/product-family/dataset-human-crc
- Collections: [oliveira-2024-colorectal](/collections/md/b.md#oliveira-2024-colorectal)
- Load: `Catalog().dataset("Jgv6kuRSBsaB5VNi0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-5im00mo1pfoeuokw0000"></a>
## Human prostate gland

- uid: `5iM00mO1pFOEUOKw0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-5im00mo1pfoeuokw0000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 1,096
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("5iM00mO1pFOEUOKw0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-ecrjkbwswjkqxkha0000"></a>
## Mouse spinal cord

- uid: `EcrJKbwSwJkqxkha0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-ecrjkbwswjkqxkha0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 262
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("EcrJKbwSwJkqxkha0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-n3xazay5erplijzu0000"></a>
## Human liver

- uid: `N3XAZAY5ERPlIJZU0000`
- Page: /datasets/visium-spatial-gene-expression-liver-n3xazay5erplijzu0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Modality: RNA
- Observations (spots): 4,992
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-024-07376-2
- Publication: https://doi.org/10.1038/s41586-024-07376-2
- Collections: [doi-10-1038-s41586-024-07376-2](/collections/md/7.md#doi-10-1038-s41586-024-07376-2)
- Load: `Catalog().dataset("N3XAZAY5ERPlIJZU0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-6tbt3hc64pp8t8qb0000"></a>
## Human heart

- uid: `6TBT3hC64Pp8T8qb0000`
- Page: /datasets/visium-spatial-gene-expression-heart-6tbt3hc64pp8t8qb0000/
- Technology: Visium
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 3,478
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-023-06311-1#data-availability
- Publication: https://doi.org/10.1038/s41586-023-06311-1
- Collections: [doi-10-1038-s41586-023-06311-1](/collections/md/f.md#doi-10-1038-s41586-023-06311-1)
- Load: `Catalog().dataset("6TBT3hC64Pp8T8qb0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-f25habj1yalcofys0000"></a>
## Human brain

- uid: `f25hABJ1YalcOFYs0000`
- Page: /datasets/visium-spatial-gene-expression-brain-f25habj1yalcofys0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 965
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE237183
- Publication: https://doi.org/10.1016/j.cell.2024.03.029
- Collections: [geo-gse237183](/collections/md/d.md#geo-gse237183)
- Load: `Catalog().dataset("f25hABJ1YalcOFYs0000").to_sdata()`


<a id="visium-spatial-gene-expression-skeletal-muscle-tissue-dvblhbijzxzsl9qx0000"></a>
## Human skeletal muscle tissue

- uid: `DvBLhBijzXZSL9qX0000`
- Page: /datasets/visium-spatial-gene-expression-skeletal-muscle-tissue-dvblhbijzxzsl9qx0000/
- Technology: Visium
- Organism: human
- Tissue: skeletal muscle tissue
- Condition: sarcoidosis
- Modality: RNA
- Observations (spots): 2,723
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE243291
- Publication: https://doi.org/10.3390/cells12232747
- Collections: [geo-gse243291](/collections/md/e.md#geo-gse243291)
- Load: `Catalog().dataset("DvBLhBijzXZSL9qX0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-izixdwihyrlholj00000"></a>
## Mouse brain

- uid: `IzIxdwIhyrLhOLJ00000`
- Page: /datasets/visium-spatial-gene-expression-brain-izixdwihyrlholj00000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,394
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221571
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [geo-gse221571](/collections/md/0.md#geo-gse221571)
- Load: `Catalog().dataset("IzIxdwIhyrLhOLJ00000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-su3jyotenrncau380000"></a>
## Mouse intestine

- uid: `SU3JYOtENrNCAu380000`
- Page: /datasets/visium-spatial-gene-expression-intestine-su3jyotenrncau380000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 3,868
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
- Publication: https://doi.org/10.1038/s41586-024-08216-z
- Collections: [geo-gse245274](/collections/md/1.md#geo-gse245274)
- Load: `Catalog().dataset("SU3JYOtENrNCAu380000").to_sdata()`


<a id="10x-xenium-urinary-bladder-pjsqvrgiqcvyqb8y0000"></a>
## Human urinary bladder

- uid: `pjSqvrGiQCvYQB8Y0000`
- Page: /datasets/10x-xenium-urinary-bladder-pjsqvrgiqcvyqb8y0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: urinary bladder
- Modality: RNA
- Observations (cells): 89,585
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM10012265
- Collections: [geo-gse345644](/collections/md/7.md#geo-gse345644)
- Load: `Catalog().dataset("pjSqvrGiQCvYQB8Y0000").to_sdata()`


<a id="visium-spatial-gene-expression-bone-element-mtfgirrg7leyaxyp0000"></a>
## Human bone element

- uid: `MTFGIrRg7LEyAxyP0000`
- Page: /datasets/visium-spatial-gene-expression-bone-element-mtfgirrg7leyaxyp0000/
- Technology: Visium
- Organism: human
- Tissue: bone element
- Condition: osteosarcoma
- Modality: RNA
- Observations (spots): 4,128
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE293065
- Publication: https://doi.org/10.1038/s41467-026-74603-x
- Collections: [geo-gse293065](/collections/md/7.md#geo-gse293065)
- Load: `Catalog().dataset("MTFGIrRg7LEyAxyP0000").to_sdata()`


<a id="visium-spatial-gene-expression-anterior-cingulate-cortex-7sad0vtpdppiw3xs0000"></a>
## Human anterior cingulate cortex

- uid: `7Sad0vTpDppiW3xS0000`
- Page: /datasets/visium-spatial-gene-expression-anterior-cingulate-cortex-7sad0vtpdppiw3xs0000/
- Technology: Visium
- Organism: human
- Tissue: anterior cingulate cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296789
- Publication: https://doi.org/10.1016/j.celrep.2026.117500
- Collections: [geo-gse296789](/collections/md/0.md#geo-gse296789)
- Load: `Catalog().dataset("7Sad0vTpDppiW3xS0000").to_sdata()`


<a id="10x-xenium-tail-qv6ih8d5bpg54kgl0000"></a>
## Ambystoma mexicanum tail

- uid: `Qv6IH8D5bPg54kgL0000`
- Page: /datasets/10x-xenium-tail-qv6ih8d5bpg54kgl0000/
- Technology: 10x Xenium
- Organism: ambystoma mexicanum
- Tissue: tail
- Modality: RNA
- Observations (cells): 2,170
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313338
- Load: `Catalog().dataset("Qv6IH8D5bPg54kgL0000").to_sdata()`


<a id="10x-xenium-oropharynx-cavwvxht0e50ssz00000"></a>
## Human oropharynx

- uid: `CavwvxHT0e50sSZ00000`
- Page: /datasets/10x-xenium-oropharynx-cavwvxht0e50ssz00000/
- Technology: 10x Xenium
- Organism: human
- Tissue: oropharynx
- Condition: oropharynx squamous cell carcinoma
- Modality: RNA
- Observations (cells): 51,534
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300147
- Publication: https://doi.org/10.1126/sciimmunol.aec3133
- Load: `Catalog().dataset("CavwvxHT0e50sSZ00000").to_sdata()`


<a id="10x-xenium-brain-qnx4xdwnoxkgzrrp0001"></a>
## Mouse brain

- uid: `QNX4XdwnoXKGZrRp0001`
- Page: /datasets/10x-xenium-brain-qnx4xdwnoxkgzrrp0001/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 63,173
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/xenium-prime-fresh-frozen-mouse-brain
- Load: `Catalog().dataset("QNX4XdwnoXKGZrRp0001").to_sdata()`


<a id="merfish-brain-mtjv6wbuzz56syp50000"></a>
## Mouse brain

- uid: `mtjv6WbuZZ56SYP50000`
- Page: /datasets/merfish-brain-mtjv6wbuzz56syp50000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 36,376
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("mtjv6WbuZZ56SYP50000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-g2dt5uf2xwyr2w8i0000"></a>
## Mouse liver

- uid: `G2Dt5UF2xWYr2W8I0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-g2dt5uf2xwyr2w8i0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-04-11_10h41m48s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("G2Dt5UF2xWYr2W8I0000").to_sdata()`


<a id="10x-xenium-spinal-cord-qjkprcrxcvvn4z9q0000"></a>
## Mouse spinal cord

- uid: `QjKpRcRXCVvn4z9Q0000`
- Page: /datasets/10x-xenium-spinal-cord-qjkprcrxcvvn4z9q0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: spinal cord
- Modality: RNA
- Observations (cells): 24,081
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328700
- Publication: https://doi.org/10.1038/s41467-026-74144-3
- Load: `Catalog().dataset("QjKpRcRXCVvn4z9Q0000").to_sdata()`


<a id="merfish-brain-jgpd1ajfqrggaz5p0000"></a>
## Mouse brain

- uid: `jGPd1aJfQRGgAz5P0000`
- Page: /datasets/merfish-brain-jgpd1ajfqrggaz5p0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 20,175
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("jGPd1aJfQRGgAz5P0000").to_sdata()`


<a id="vizgen-merscope-brain-b5dycgh4a08dt4v40000"></a>
## Mouse brain

- uid: `B5dyCgh4a08Dt4v40000`
- Page: /datasets/vizgen-merscope-brain-b5dycgh4a08dt4v40000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 57,160
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("B5dyCgh4a08Dt4v40000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-5ot3yspufpmlsfse0000"></a>
## Human lymph node

- uid: `5oT3YsPuFPMlsfse0000`
- Page: /datasets/phenocycler-fusion-lymph-node-5ot3yspufpmlsfse0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: marginal zone lymphoma
- Modality: protein
- Observations (cells): 12,072
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("5oT3YsPuFPMlsfse0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-g4ckhcxyfpchi0e20000"></a>
## Human lymph node

- uid: `G4CKhCXyfpCHi0e20000`
- Page: /datasets/phenocycler-fusion-lymph-node-g4ckhcxyfpchi0e20000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 18,781
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("G4CKhCXyfpCHi0e20000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-vuyqxrkj8xft2ivo0000"></a>
## Human kidney

- uid: `vuyQXRKJ8XFT2IVo0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-vuyqxrkj8xft2ivo0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 34,692
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-09-06_22h35m27s
- Load: `Catalog().dataset("vuyQXRKJ8XFT2IVo0000").to_sdata()`


<a id="mibi-tof-breast-apsiym4cbnvrgyo00000"></a>
## Human breast

- uid: `apsIym4CbNVRgyO00000`
- Page: /datasets/mibi-tof-breast-apsiym4cbnvrgyo00000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,333
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("apsIym4CbNVRgyO00000").to_sdata()`


<a id="10x-xenium-dorsolateral-prefrontal-cortex-vlz8mw68p2m1x98r0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `VLZ8Mw68p2m1X98R0000`
- Page: /datasets/10x-xenium-dorsolateral-prefrontal-cortex-vlz8mw68p2m1x98r0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (cells): 63,221
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307404
- Load: `Catalog().dataset("VLZ8Mw68p2m1X98R0000").to_sdata()`


<a id="10x-xenium-ovary-fnwzhut3qukpfjb40000"></a>
## Human ovary

- uid: `FNwZHUT3qUkPFJb40000`
- Page: /datasets/10x-xenium-ovary-fnwzhut3qukpfjb40000/
- Technology: 10x Xenium
- Organism: human
- Tissue: ovary
- Condition: ovarian cancer
- Modality: RNA
- Observations (cells): 967,159
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE344584
- Load: `Catalog().dataset("FNwZHUT3qUkPFJb40000").to_sdata()`


<a id="10x-xenium-descending-colon-ykbqaosl0pmwb4ez0000"></a>
## Human descending colon

- uid: `ykBQAOsL0pmWB4ez0000`
- Page: /datasets/10x-xenium-descending-colon-ykbqaosl0pmwb4ez0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: descending colon
- Condition: ulcerative colitis
- Modality: RNA
- Observations (cells): 35,725
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330953
- Publication: https://doi.org/10.1126/science.aeh7112
- Load: `Catalog().dataset("ykBQAOsL0pmWB4ez0000").to_sdata()`


<a id="10x-xenium-lung-qcqupxlfhmx0f6lq0000"></a>
## Human lung

- uid: `QCqUPxlfHmx0f6lq0000`
- Page: /datasets/10x-xenium-lung-qcqupxlfhmx0f6lq0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Condition: non-small cell lung carcinoma
- Modality: RNA
- Observations (cells): 73,040
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311609
- Publication: https://doi.org/10.1038/s41592-026-03089-8
- Load: `Catalog().dataset("QCqUPxlfHmx0f6lq0000").to_sdata()`


<a id="10x-xenium-bone-marrow-gyvwqmd0mesr6klw0000"></a>
## Human bone marrow

- uid: `gYVwqmd0mEsr6klw0000`
- Page: /datasets/10x-xenium-bone-marrow-gyvwqmd0mesr6klw0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: bone marrow
- Condition: smoldering plasma cell myeloma
- Modality: RNA
- Observations (cells): 102,798
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299207
- Publication: https://doi.org/10.1182/blood.2025028896
- Load: `Catalog().dataset("gYVwqmd0mEsr6klw0000").to_sdata()`