# SpatialData-DB datasets, shard 80

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="spatial-transcriptomics-brain-cbvanwex1qtwgn7c0000"></a>
## Mouse brain

- uid: `cBvAnWeX1QtwGn7c0000`
- Page: /datasets/spatial-transcriptomics-brain-cbvanwex1qtwgn7c0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 240
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("cBvAnWeX1QtwGn7c0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-k9ol7whc0nuusz1c0000"></a>
## Mouse spinal cord

- uid: `k9oL7whC0NuuSZ1C0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-k9ol7whc0nuusz1c0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 243
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("k9oL7whC0NuuSZ1C0000").to_sdata()`


<a id="visium-spatial-gene-expression-spinal-cord-z87lv7l10knrkseo0000"></a>
## Mouse spinal cord

- uid: `z87lv7L10kNRKSEO0000`
- Page: /datasets/visium-spatial-gene-expression-spinal-cord-z87lv7l10knrkseo0000/
- Technology: Visium
- Organism: mouse
- Tissue: spinal cord
- Modality: RNA
- Observations (spots): 550
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-022-05385-7
- Publication: https://doi.org/10.1038/s41586-022-05385-7
- Collections: [doi-10-1038-s41586-022-05385-7](/collections/md/a.md#doi-10-1038-s41586-022-05385-7)
- Load: `Catalog().dataset("z87lv7L10kNRKSEO0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-lduutmu9vmx3amoz0000"></a>
## Human kidney

- uid: `LdUUTMU9VMX3amOZ0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-lduutmu9vmx3amoz0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: clear cell renal carcinoma
- Modality: RNA
- Observations (spots): 3,585
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/35231421/
- Publication: https://doi.org/10.1016/j.immuni.2022.02.001
- Collections: [doi-10-1016-j-immuni-2022-02-001](/collections/md/d.md#doi-10-1016-j-immuni-2022-02-001)
- Load: `Catalog().dataset("LdUUTMU9VMX3amOZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-oral-cavity-xyitpg2nedzpdvwo0000"></a>
## Human oral cavity

- uid: `xYiTpG2nedzpDvwO0000`
- Page: /datasets/visium-spatial-gene-expression-oral-cavity-xyitpg2nedzpdvwo0000/
- Technology: Visium
- Organism: human
- Tissue: oral cavity
- Condition: oral cavity squamous cell carcinoma
- Modality: RNA
- Observations (spots): 1,836
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE208253
- Publication: https://doi.org/10.1038/s41467-023-40271-4
- Collections: [geo-gse208253](/collections/md/e.md#geo-gse208253)
- Load: `Catalog().dataset("xYiTpG2nedzpDvwO0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-ciwpkq9w6pqkajnz0000"></a>
## Human basal ganglion

- uid: `ciWPkQ9W6PQKaJNz0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-ciwpkq9w6pqkajnz0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 35,374
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("ciWPkQ9W6PQKaJNz0000").to_sdata()`


<a id="visium-spatial-gene-expression-mammary-gland-ud6pmtpfvd1anjjz0000"></a>
## Rat mammary gland

- uid: `UD6PmTpfVd1AnJJZ0000`
- Page: /datasets/visium-spatial-gene-expression-mammary-gland-ud6pmtpfvd1anjjz0000/
- Technology: Visium
- Organism: rat
- Tissue: mammary gland
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 2,397
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253585
- Publication: https://doi.org/10.1016/j.ccell.2026.03.015
- Collections: [geo-gse253585](/collections/md/8.md#geo-gse253585)
- Load: `Catalog().dataset("UD6PmTpfVd1AnJJZ0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-0wdjaokpn0oyqgsa0000"></a>
## Human basal ganglion

- uid: `0wDJAokpn0oYqGsA0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-0wdjaokpn0oyqgsa0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 45,870
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("0wDJAokpn0oYqGsA0000").to_sdata()`


<a id="10x-xenium-bone-marrow-0w9hdkmt5xvkii9m0000"></a>
## Human bone marrow

- uid: `0W9hDKMT5xVkIi9m0000`
- Page: /datasets/10x-xenium-bone-marrow-0w9hdkmt5xvkii9m0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: bone marrow
- Modality: RNA
- Observations (cells): 40,939
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8386296
- Publication: https://doi.org/10.1038/s41588-026-02671-2
- Collections: [geo-gse271824](/collections/md/9.md#geo-gse271824)
- Load: `Catalog().dataset("0W9hDKMT5xVkIi9m0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-yif99adslv4x0f5c0000"></a>
## Human skin of body

- uid: `YIf99ADSlv4X0F5C0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-yif99adslv4x0f5c0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous melanoma
- Modality: RNA
- Observations (spots): 2,145
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300445
- Publication: https://doi.org/10.1136/jitc-2025-014030
- Collections: [geo-gse300445](/collections/md/d.md#geo-gse300445)
- Load: `Catalog().dataset("YIf99ADSlv4X0F5C0000").to_sdata()`


<a id="10x-xenium-kidney-asap8kris9wygxur0000"></a>
## Human kidney

- uid: `asaP8kriS9WyGxUr0000`
- Page: /datasets/10x-xenium-kidney-asap8kris9wygxur0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Modality: RNA
- Observations (cells): 481,717
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8933094
- Publication: https://doi.org/10.1038/s41467-025-59819-7
- Collections: [geo-gse294965](/collections/md/2.md#geo-gse294965)
- Load: `Catalog().dataset("asaP8kriS9WyGxUr0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-n3yglwsp6mz1pvyw0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `n3yGLWSp6MZ1pVyW0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-n3yglwsp6mz1pvyw0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: bipolar disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("n3yGLWSp6MZ1pVyW0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-5tlwh0a8v72aidu10000"></a>
## Mouse brain

- uid: `5TlWH0a8v72AidU10000`
- Page: /datasets/visium-spatial-gene-expression-brain-5tlwh0a8v72aidu10000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,219
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("5TlWH0a8v72AidU10000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-xsy8esnukndv9nmf0000"></a>
## Mouse breast

- uid: `Xsy8esnUkndV9nmF0000`
- Page: /datasets/visium-spatial-gene-expression-breast-xsy8esnukndv9nmf0000/
- Technology: Visium
- Organism: mouse
- Tissue: breast
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 2,147
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Collections: [geo-gse299631](/collections/md/e.md#geo-gse299631)
- Load: `Catalog().dataset("Xsy8esnUkndV9nmF0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-g5jm5iehkruk0fn60000"></a>
## Mouse brain

- uid: `g5jm5iEHkRuK0FN60000`
- Page: /datasets/visium-spatial-gene-expression-brain-g5jm5iehkruk0fn60000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: Alzheimer disease
- Modality: RNA
- Observations (spots): 3,583
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282203
- Publication: https://doi.org/10.64898/2026.01.26.701799
- Collections: [geo-gse282203](/collections/md/3.md#geo-gse282203)
- Load: `Catalog().dataset("g5jm5iEHkRuK0FN60000").to_sdata()`


<a id="10x-xenium-pelvic-lymph-node-pok6nljasa1egirn0000"></a>
## Human pelvic lymph node

- uid: `POK6NlJAsa1EGirN0000`
- Page: /datasets/10x-xenium-pelvic-lymph-node-pok6nljasa1egirn0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: pelvic lymph node
- Condition: cutaneous neuroendocrine carcinoma
- Modality: RNA
- Observations (cells): 106,368
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326660
- Publication: https://doi.org/10.1126/scitranslmed.aea8773
- Collections: [geo-gse326660](/collections/md/a.md#geo-gse326660)
- Load: `Catalog().dataset("POK6NlJAsa1EGirN0000").to_sdata()`


<a id="10x-xenium-ileum-o8dnz5kytvqput7u0000"></a>
## Human ileum

- uid: `o8DNZ5KYTVQpuT7U0000`
- Page: /datasets/10x-xenium-ileum-o8dnz5kytvqput7u0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: ileum
- Condition: ulcerative colitis
- Modality: RNA
- Observations (cells): 38,405
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312420
- Publication: https://doi.org/10.1038/s41467-026-72482-w
- Load: `Catalog().dataset("o8DNZ5KYTVQpuT7U0000").to_sdata()`


<a id="10x-xenium-kidney-p0h5poq4tbzupmfh0000"></a>
## Human kidney

- uid: `P0H5pOq4TbzUpmfH0000`
- Page: /datasets/10x-xenium-kidney-p0h5poq4tbzupmfh0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Modality: RNA
- Observations (cells): 90,617
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE302264
- Load: `Catalog().dataset("P0H5pOq4TbzUpmfH0000").to_sdata()`


<a id="10x-xenium-bone-marrow-r4z6wvdngae0uwud0000"></a>
## Human bone marrow

- uid: `r4Z6WVDngae0UwUd0000`
- Page: /datasets/10x-xenium-bone-marrow-r4z6wvdngae0uwud0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: bone marrow
- Condition: plasma cell myeloma
- Modality: RNA
- Observations (cells): 27,995
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288340
- Load: `Catalog().dataset("r4Z6WVDngae0UwUd0000").to_sdata()`


<a id="visium-spatial-gene-expression-amygdala-syj0cmtinivwvrjy0000"></a>
## Human amygdala

- uid: `Syj0CMtiNIVwvrJy0000`
- Page: /datasets/visium-spatial-gene-expression-amygdala-syj0cmtinivwvrjy0000/
- Technology: Visium
- Organism: human
- Tissue: amygdala
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Collections: [geo-gse342709](/collections/md/a.md#geo-gse342709)
- Load: `Catalog().dataset("Syj0CMtiNIVwvrJy0000").to_sdata()`


<a id="visium-spatial-gene-expression-placenta-j1og9ngxwhkdt6fm0000"></a>
## Mouse placenta

- uid: `j1OG9NgXwHKdt6FM0000`
- Page: /datasets/visium-spatial-gene-expression-placenta-j1og9ngxwhkdt6fm0000/
- Technology: Visium
- Organism: mouse
- Tissue: placenta
- Modality: RNA
- Observations (spots): 859
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333401
- Publication: https://doi.org/10.64898/2026.07.11.732137
- Collections: [geo-gse333401](/collections/md/5.md#geo-gse333401)
- Load: `Catalog().dataset("j1OG9NgXwHKdt6FM0000").to_sdata()`


<a id="stereo-seq-prefrontal-cortex-eany6era0u2kywij0000"></a>
## Human prefrontal cortex

- uid: `EANY6ErA0u2Kywij0000`
- Page: /datasets/stereo-seq-prefrontal-cortex-eany6era0u2kywij0000/
- Technology: Stereo-seq
- Organism: human
- Tissue: prefrontal cortex
- Condition: Alzheimer disease
- Modality: RNA
- Observations: 84,904
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269906
- Collections: [geo-gse269906](/collections/md/5.md#geo-gse269906)
- Load: `Catalog().dataset("EANY6ErA0u2Kywij0000").to_sdata()`


<a id="mibi-tof-breast-xjw2frhtlpznnuev0000"></a>
## Human breast

- uid: `XjW2FrHtLPzNNueV0000`
- Page: /datasets/mibi-tof-breast-xjw2frhtlpznnuev0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,003
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("XjW2FrHtLPzNNueV0000").to_sdata()`


<a id="mibi-tof-lymph-node-vyp1c1anht1do4a00000"></a>
## Human lymph node

- uid: `vYp1c1aNHT1DO4a00000`
- Page: /datasets/mibi-tof-lymph-node-vyp1c1anht1do4a00000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,716
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("vYp1c1aNHT1DO4a00000").to_sdata()`


<a id="10x-xenium-spinal-cord-a1cvhajax3b3wdcr0000"></a>
## Mouse spinal cord

- uid: `A1cvHAJax3b3wdCR0000`
- Page: /datasets/10x-xenium-spinal-cord-a1cvhajax3b3wdcr0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: spinal cord
- Modality: RNA
- Observations (cells): 28,768
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328700
- Publication: https://doi.org/10.1038/s41467-026-74144-3
- Load: `Catalog().dataset("A1cvHAJax3b3wdCR0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-mn4ktjde8oi3w07e0000"></a>
## Human lymph node

- uid: `Mn4ktjde8oi3W07e0000`
- Page: /datasets/phenocycler-fusion-lymph-node-mn4ktjde8oi3w07e0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: protein
- Observations (cells): 7,494
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("Mn4ktjde8oi3W07e0000").to_sdata()`


<a id="vizgen-merscope-brain-hyodfqpdyiul3ca50000"></a>
## Mouse brain

- uid: `HyodfqPdyIuL3cA50000`
- Page: /datasets/vizgen-merscope-brain-hyodfqpdyiul3ca50000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 9,875
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("HyodfqPdyIuL3cA50000").to_sdata()`


<a id="vizgen-merscope-brain-wjgi9vs7mbh1fdgd0000"></a>
## Mouse brain

- uid: `wJGi9vs7mBH1Fdgd0000`
- Page: /datasets/vizgen-merscope-brain-wjgi9vs7mbh1fdgd0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 91,017
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("wJGi9vs7mBH1Fdgd0000").to_sdata()`