# SpatialData-DB datasets, shard 7d

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-amygdala-qjigbzgfneij1csi0000"></a>
## Human amygdala

- uid: `QJIgbZgfNeIJ1cSi0000`
- Page: /datasets/visium-spatial-gene-expression-amygdala-qjigbzgfneij1csi0000/
- Technology: Visium
- Organism: human
- Tissue: amygdala
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Collections: [geo-gse342709](/collections/md/a.md#geo-gse342709)
- Load: `Catalog().dataset("QJIgbZgfNeIJ1cSi0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-rrsqniwtik3pny5s0000"></a>
## Human liver

- uid: `rrSqNIwTIk3PnY5s0000`
- Page: /datasets/visium-spatial-gene-expression-liver-rrsqniwtik3pny5s0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 1,731
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE281759
- Publication: https://doi.org/10.1016/j.jhepr.2026.101790
- Collections: [geo-gse281759](/collections/md/3.md#geo-gse281759)
- Load: `Catalog().dataset("rrSqNIwTIk3PnY5s0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-7uozxvxcina3gqwr0000"></a>
## Mouse brain

- uid: `7UOzXvxCina3gqwR0000`
- Page: /datasets/visium-spatial-gene-expression-brain-7uozxvxcina3gqwr0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: stroke disorder
- Modality: RNA
- Observations (spots): 2,206
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325817
- Publication: https://doi.org/10.1038/s43018-026-01238-8
- Load: `Catalog().dataset("7UOzXvxCina3gqwR0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-wsc6phzxhr5assqe0000"></a>
## Mouse spinal cord

- uid: `wsc6PHZxhR5ASsQe0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-wsc6phzxhr5assqe0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 320
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("wsc6PHZxhR5ASsQe0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-uyijugfpkn6dngto0000"></a>
## Mouse spinal cord

- uid: `uyIjuGFPkn6dNgto0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-uyijugfpkn6dngto0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 381
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("uyIjuGFPkn6dNgto0000").to_sdata()`


<a id="visium-hd-intestine-w99j3sgoeu0qjecr0000"></a>
## Human intestine

- uid: `W99J3SgOEU0QJEcr0000`
- Page: /datasets/visium-hd-intestine-w99j3sgoeu0qjecr0000/
- Technology: Visium HD
- Organism: human
- Tissue: intestine
- Condition: graft versus host disease
- Modality: RNA
- Observations (bins): 550,017
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9219224
- Publication: https://doi.org/10.1038/s41590-026-02631-2
- Collections: [geo-gse307215-gvhd-gut](/collections/md/2.md#geo-gse307215-gvhd-gut)
- Load: `Catalog().dataset("W99J3SgOEU0QJEcr0000").to_sdata()`


<a id="visium-hd-urinary-bladder-8lkpkvijvrikzxud0000"></a>
## Human urinary bladder

- uid: `8LkPkvIjvRiKZxud0000`
- Page: /datasets/visium-hd-urinary-bladder-8lkpkvijvrikzxud0000/
- Technology: Visium HD
- Organism: human
- Tissue: urinary bladder
- Condition: prostate cancer
- Modality: RNA
- Observations (bins): 363,429
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8658290
- Publication: https://doi.org/10.1172/JCI193745
- Collections: [geo-gse283227](/collections/md/3.md#geo-gse283227)
- Load: `Catalog().dataset("8LkPkvIjvRiKZxud0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-b3xmorlwt3g06ent0000"></a>
## Human breast

- uid: `b3XMORLWT3g06eNt0000`
- Page: /datasets/visium-spatial-gene-expression-breast-b3xmorlwt3g06ent0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 2,104
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE213688
- Publication: https://doi.org/10.1016/j.labinv.2023.100258
- Collections: [geo-gse213688](/collections/md/5.md#geo-gse213688)
- Load: `Catalog().dataset("b3XMORLWT3g06eNt0000").to_sdata()`


<a id="visium-spatial-gene-expression-mesenteric-artery-zjxvmu1rnsbzsnen0000"></a>
## Human mesenteric artery

- uid: `ZJXVMu1RNSBzsNEN0000`
- Page: /datasets/visium-spatial-gene-expression-mesenteric-artery-zjxvmu1rnsbzsnen0000/
- Technology: Visium
- Organism: human
- Tissue: mesenteric artery
- Condition: type 2 diabetes mellitus
- Modality: RNA
- Observations (spots): 851
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE293427
- Publication: https://doi.org/10.1126/scitranslmed.adu3761
- Collections: [geo-gse293427](/collections/md/7.md#geo-gse293427)
- Load: `Catalog().dataset("ZJXVMu1RNSBzsNEN0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-s2jkcwn4fl697i5z0000"></a>
## Mouse brain

- uid: `s2JkcWN4fl697i5z0000`
- Page: /datasets/visium-spatial-gene-expression-brain-s2jkcwn4fl697i5z0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,311
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("s2JkcWN4fl697i5z0000").to_sdata()`


<a id="mibi-tof-breast-zpv5xhneketvn0mf0000"></a>
## Human breast

- uid: `zPv5xhNEkETVN0mF0000`
- Page: /datasets/mibi-tof-breast-zpv5xhneketvn0mf0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 6,145
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("zPv5xhNEkETVN0mF0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-pseagnzcwtls5coo0000"></a>
## Human prostate gland

- uid: `PsEaGNzCWtls5COo0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-pseagnzcwtls5coo0000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 2,190
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("PsEaGNzCWtls5COo0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-n4evnzla0rg0om560000"></a>
## Human dorsolateral prefrontal cortex

- uid: `n4eVnzlA0rg0oM560000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-n4evnzla0rg0om560000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("n4eVnzlA0rg0oM560000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-fummkcvivtnityta0000"></a>
## Mouse heart

- uid: `fUMMKcVIvtnITyTa0000`
- Page: /datasets/visium-spatial-gene-expression-heart-fummkcvivtnityta0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Condition: myocardial infarction
- Modality: RNA
- Observations (spots): 1,425
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5943195
- Collections: [geo-gse176092](/collections/md/0.md#geo-gse176092)
- Load: `Catalog().dataset("fUMMKcVIvtnITyTa0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-3d8xaxjmvcyp6iv30000"></a>
## Mouse liver

- uid: `3D8xAXJmvcyP6iV30000`
- Page: /datasets/visium-spatial-gene-expression-liver-3d8xaxjmvcyp6iv30000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: metabolic dysfunction-associated steatotic liver disease
- Modality: RNA
- Observations (spots): 2,254
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5764422
- Collections: [geo-gse192741](/collections/md/4.md#geo-gse192741)
- Load: `Catalog().dataset("3D8xAXJmvcyP6iV30000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-axq7tnbvtnkt8ajc0000"></a>
## Human ovary

- uid: `Axq7tnBvTNKt8AJC0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-axq7tnbvtnkt8ajc0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 1,845
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327312
- Collections: [geo-gse327312](/collections/md/b.md#geo-gse327312)
- Load: `Catalog().dataset("Axq7tnBvTNKt8AJC0000").to_sdata()`


<a id="visium-spatial-gene-expression-ilium-ow1k1dxdqb5esize0000"></a>
## Human ilium

- uid: `oW1k1DxdQb5EsiZE0000`
- Page: /datasets/visium-spatial-gene-expression-ilium-ow1k1dxdqb5esize0000/
- Technology: Visium
- Organism: human
- Tissue: ilium
- Modality: RNA
- Observations (spots): 1,032
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE281317
- Publication: https://doi.org/10.1038/s41586-025-09399-9
- Collections: [geo-gse281317](/collections/md/6.md#geo-gse281317)
- Load: `Catalog().dataset("oW1k1DxdQb5EsiZE0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-jtccjn3rorzusdmq0000"></a>
## Mouse colon

- uid: `jtccjn3RORZuSDmq0000`
- Page: /datasets/visium-spatial-gene-expression-colon-jtccjn3rorzusdmq0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colorectal cancer
- Modality: RNA
- Observations (spots): 2,965
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE284989
- Publication: https://doi.org/10.3389/fonc.2025.1549237
- Collections: [geo-gse284989](/collections/md/1.md#geo-gse284989)
- Load: `Catalog().dataset("jtccjn3RORZuSDmq0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-mctt2pqhftjcam8n0000"></a>
## Mouse ovary

- uid: `McTt2PQhfTjcAM8n0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-mctt2pqhftjcam8n0000/
- Technology: Visium
- Organism: mouse
- Tissue: ovary
- Condition: ovarian cancer
- Modality: RNA
- Observations (spots): 2,823
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274509
- Publication: https://doi.org/10.21203/rs.3.rs-4940287/v1
- Collections: [geo-gse274509](/collections/md/a.md#geo-gse274509)
- Load: `Catalog().dataset("McTt2PQhfTjcAM8n0000").to_sdata()`


<a id="merfish-brain-8jl5vqs411b53nyj0000"></a>
## Mouse brain

- uid: `8jL5vQs411B53nYJ0000`
- Page: /datasets/merfish-brain-8jl5vqs411b53nyj0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 12,782
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("8jL5vQs411B53nYJ0000").to_sdata()`


<a id="merfish-brain-p7qdr92kajtjw8xr0000"></a>
## Mouse brain

- uid: `P7qdR92KaJtjW8xR0000`
- Page: /datasets/merfish-brain-p7qdr92kajtjw8xr0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 27,169
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("P7qdR92KaJtjW8xR0000").to_sdata()`


<a id="10x-xenium-skin-of-body-sfntc51gybitnwfn0000"></a>
## Human skin of body

- uid: `SfnTC51gYbitNwFn0000`
- Page: /datasets/10x-xenium-skin-of-body-sfntc51gybitnwfn0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: acne
- Modality: RNA
- Observations (cells): 6,800
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301280
- Load: `Catalog().dataset("SfnTC51gYbitNwFn0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-ryvds5jevli6jvut0000"></a>
## Human kidney

- uid: `ryVds5JEvLi6JVUt0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-ryvds5jevli6jvut0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 11,550
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-06-04_01h11m02s
- Load: `Catalog().dataset("ryVds5JEvLi6JVUt0000").to_sdata()`


<a id="mibi-tof-breast-fdzhiteclpm2ej3a0000"></a>
## Human breast

- uid: `FDZHitEClpm2eJ3a0000`
- Page: /datasets/mibi-tof-breast-fdzhiteclpm2ej3a0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,248
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("FDZHitEClpm2eJ3a0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-4vqow7jn5pplzz9v0000"></a>
## Human kidney

- uid: `4VQoW7jn5pPLzz9V0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-4vqow7jn5pplzz9v0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 7,938
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-02-17_03h37m29s
- Load: `Catalog().dataset("4VQoW7jn5pPLzz9V0000").to_sdata()`


<a id="vizgen-merscope-unknown-hxdc1sdm70odsyqb0000"></a>
## Human unknown

- uid: `HXDc1sdm70OdsyQB0000`
- Page: /datasets/vizgen-merscope-unknown-hxdc1sdm70odsyqb0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: unknown
- Condition: cancer
- Modality: RNA
- Observations (cells): 25,781
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308147
- Publication: https://doi.org/10.1038/s41467-025-64990-y
- Collections: [geo-gsm9238732](/collections/md/9.md#geo-gsm9238732)
- Load: `Catalog().dataset("HXDc1sdm70OdsyQB0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-xfrhjf9zejnceczt0000"></a>
## Human kidney

- uid: `XfrHJF9ZEJNCeczT0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-xfrhjf9zejnceczt0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 20,862
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-03-15_20h56m13s
- Publication: https://doi.org/10.1681/asn.0000000000000393
- Load: `Catalog().dataset("XfrHJF9ZEJNCeczT0000").to_sdata()`


<a id="mibi-tof-breast-aciabu0vjlzfhjlw0000"></a>
## Human breast

- uid: `ACIaBU0VjlzFHJLW0000`
- Page: /datasets/mibi-tof-breast-aciabu0vjlzfhjlw0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,763
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("ACIaBU0VjlzFHJLW0000").to_sdata()`


<a id="10x-xenium-brain-3qmbuwwigwjgghvr0000"></a>
## Human brain

- uid: `3qMBUwWiGWJGGHvR0000`
- Page: /datasets/10x-xenium-brain-3qmbuwwigwjgghvr0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (cells): 43,147
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260452
- Publication: https://doi.org/10.1038/s41586-026-10214-2
- Load: `Catalog().dataset("3qMBUwWiGWJGGHvR0000").to_sdata()`


<a id="mibi-tof-breast-5fbvo8awnfwtktvf0000"></a>
## Human breast

- uid: `5fBVo8aWNFWtktvF0000`
- Page: /datasets/mibi-tof-breast-5fbvo8awnfwtktvf0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,624
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("5fBVo8aWNFWtktvF0000").to_sdata()`


<a id="stereo-seq-forebrain-xb7jmoadwduwcyzr0000"></a>
## Mouse forebrain

- uid: `XB7JmoAdwDuwCyZR0000`
- Page: /datasets/stereo-seq-forebrain-xb7jmoadwduwcyzr0000/
- Technology: Stereo-seq
- Organism: mouse
- Tissue: forebrain
- Modality: RNA
- Observations: 35,768
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295815
- Collections: [geo-gse295815](/collections/md/e.md#geo-gse295815)
- Load: `Catalog().dataset("XB7JmoAdwDuwCyZR0000").to_sdata()`