# SpatialData-DB datasets, shard 7b

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="vizgen-merscope-brain-ssmft4kvmabfcrvn0000"></a>
## Mouse brain

- uid: `SsMFt4kVMaBFcRvn0000`
- Page: /datasets/vizgen-merscope-brain-ssmft4kvmabfcrvn0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 8,057
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("SsMFt4kVMaBFcRvn0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-4gujjge32nuagqxc0000"></a>
## Mouse colon

- uid: `4gUjJgE32NuAGqXc0000`
- Page: /datasets/visium-spatial-gene-expression-colon-4gujjge32nuagqxc0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: adenocarcinoma
- Modality: RNA
- Observations (spots): 3,090
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211895
- Publication: https://doi.org/10.1016/j.crmeth.2022.100340
- Collections: [geo-gse211895](/collections/md/d.md#geo-gse211895)
- Load: `Catalog().dataset("4gUjJgE32NuAGqXc0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tvbrscuxl53vpial0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `TvbRscuXl53VPiaL0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tvbrscuxl53vpial0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: major depressive disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("TvbRscuXl53VPiaL0000").to_sdata()`


<a id="spatial-transcriptomics-brain-pzo7rzdra64fvprd0000"></a>
## Mouse brain

- uid: `PZO7RzDRa64fvprd0000`
- Page: /datasets/spatial-transcriptomics-brain-pzo7rzdra64fvprd0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 536
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("PZO7RzDRa64fvprd0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-urwo68jluiz6idm20000"></a>
## Human pancreas

- uid: `UrwO68jLUIz6iDm20000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-urwo68jluiz6idm20000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic adenocarcinoma
- Modality: RNA
- Observations (spots): 3,493
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-40314-w
- Publication: https://doi.org/10.1038/s41467-023-40314-w
- Collections: [doi-10-1038-s41467-023-40314-w](/collections/md/4.md#doi-10-1038-s41467-023-40314-w)
- Load: `Catalog().dataset("UrwO68jLUIz6iDm20000").to_sdata()`


<a id="visium-spatial-gene-expression-spinal-cord-sq28flesgydow9tv0000"></a>
## Mouse spinal cord

- uid: `Sq28FLESGYDow9tV0000`
- Page: /datasets/visium-spatial-gene-expression-spinal-cord-sq28flesgydow9tv0000/
- Technology: Visium
- Organism: mouse
- Tissue: spinal cord
- Modality: RNA
- Observations (spots): 573
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-022-05385-7
- Publication: https://doi.org/10.1038/s41586-022-05385-7
- Collections: [doi-10-1038-s41586-022-05385-7](/collections/md/a.md#doi-10-1038-s41586-022-05385-7)
- Load: `Catalog().dataset("Sq28FLESGYDow9tV0000").to_sdata()`


<a id="spatial-transcriptomics-prostate-gland-yylwmxosjwoueoli0000"></a>
## Human prostate gland

- uid: `YyLWMXOsjwoUEOLi0000`
- Page: /datasets/spatial-transcriptomics-prostate-gland-yylwmxosjwoueoli0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 155
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482614/
- Publication: https://doi.org/10.1038/s41467-022-33069-3
- Collections: [doi-10-1038-s41467-022-33069-3](/collections/md/a.md#doi-10-1038-s41467-022-33069-3)
- Load: `Catalog().dataset("YyLWMXOsjwoUEOLi0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-rbcex5fygwquxk3y0000"></a>
## Mouse brain

- uid: `rbcEX5FYgwquxK3Y0000`
- Page: /datasets/visium-spatial-gene-expression-brain-rbcex5fygwquxk3y0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,114
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-36071-5
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [doi-10-1038-s41467-023-36071-5](/collections/md/9.md#doi-10-1038-s41467-023-36071-5)
- Load: `Catalog().dataset("rbcEX5FYgwquxK3Y0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-2kbvvl4avjrqy8ik0000"></a>
## Human skin of body

- uid: `2KBVVl4aVjRqy8Ik0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-2kbvvl4avjrqy8ik0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: lichen planus
- Modality: RNA
- Observations (spots): 825
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("2KBVVl4aVjRqy8Ik0000").to_sdata()`


<a id="visium-spatial-gene-expression-uterine-cervix-u5vyqoc0wa97cp3g0000"></a>
## Human uterine cervix

- uid: `U5VYqoc0wA97cp3g0000`
- Page: /datasets/visium-spatial-gene-expression-uterine-cervix-u5vyqoc0wa97cp3g0000/
- Technology: Visium
- Organism: human
- Tissue: uterine cervix
- Condition: human papilloma virus infection
- Modality: RNA
- Observations (spots): 1,054
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10040725/
- Publication: https://doi.org/10.1002/ctm2.1219
- Collections: [doi-10-1002-ctm2-1219](/collections/md/9.md#doi-10-1002-ctm2-1219)
- Load: `Catalog().dataset("U5VYqoc0wA97cp3g0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-mu3wudaxrksdydgu0000"></a>
## Mouse brain

- uid: `Mu3wuDAxRKsdYDgu0000`
- Page: /datasets/visium-spatial-gene-expression-brain-mu3wudaxrksdydgu0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,166
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE221571
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [geo-gse221571](/collections/md/0.md#geo-gse221571)
- Load: `Catalog().dataset("Mu3wuDAxRKsdYDgu0000").to_sdata()`


<a id="visium-spatial-gene-expression-tendon-vazilcwf44gjrnal0000"></a>
## Mouse tendon

- uid: `vAzIlCWf44gJRNAL0000`
- Page: /datasets/visium-spatial-gene-expression-tendon-vazilcwf44gjrnal0000/
- Technology: Visium
- Organism: mouse
- Tissue: tendon
- Modality: RNA
- Observations (spots): 1,017
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216214
- Publication: https://doi.org/10.1016/j.celrep.2022.111706
- Collections: [geo-gse216214](/collections/md/c.md#geo-gse216214)
- Load: `Catalog().dataset("vAzIlCWf44gJRNAL0000").to_sdata()`


<a id="mibi-tof-breast-xzjwywl7kyaidl2v0000"></a>
## Human breast

- uid: `xzJwywl7KyaIdL2V0000`
- Page: /datasets/mibi-tof-breast-xzjwywl7kyaidl2v0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,834
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("xzJwywl7KyaIdL2V0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-13witqirtdtax1vu0000"></a>
## Mouse brain

- uid: `13WitqIRTDtAx1Vu0000`
- Page: /datasets/visium-spatial-gene-expression-brain-13witqirtdtax1vu0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: glioma
- Modality: RNA
- Observations (spots): 2,208
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269545
- Collections: [geo-gse269545](/collections/md/0.md#geo-gse269545)
- Load: `Catalog().dataset("13WitqIRTDtAx1Vu0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-l5ltppuospvcctrn0000"></a>
## Human brain

- uid: `l5LtPPUOsPVCcTrN0000`
- Page: /datasets/visium-spatial-gene-expression-brain-l5ltppuospvcctrn0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: metastatic malignant neoplasm
- Modality: RNA
- Observations (spots): 1,033
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325196
- Collections: [geo-gse325196](/collections/md/2.md#geo-gse325196)
- Load: `Catalog().dataset("l5LtPPUOsPVCcTrN0000").to_sdata()`


<a id="visium-spatial-gene-expression-jejunum-zy5v5yrq5qlddh500000"></a>
## Macaque jejunum

- uid: `Zy5V5yrQ5qlDDH500000`
- Page: /datasets/visium-spatial-gene-expression-jejunum-zy5v5yrq5qlddh500000/
- Technology: Visium
- Organism: macaque
- Tissue: jejunum
- Condition: simian immunodeficiency virus infection
- Modality: RNA
- Observations (spots): 2,661
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341607
- Publication: https://doi.org/10.3389/fimmu.2026.1862864
- Collections: [geo-gse341607](/collections/md/3.md#geo-gse341607)
- Load: `Catalog().dataset("Zy5V5yrQ5qlDDH500000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-1y4sb5uzzwr598ym0000"></a>
## Human brain

- uid: `1Y4sB5UzZwr598YM0000`
- Page: /datasets/visium-spatial-gene-expression-brain-1y4sb5uzzwr598ym0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: metastatic malignant neoplasm
- Modality: RNA
- Observations (spots): 2,671
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325196
- Collections: [geo-gse325196](/collections/md/2.md#geo-gse325196)
- Load: `Catalog().dataset("1Y4sB5UzZwr598YM0000").to_sdata()`


<a id="visium-spatial-gene-expression-primary-motor-cortex-u5q9ptqrumd8bxh70000"></a>
## Human primary motor cortex

- uid: `U5q9pTqruMD8bXH70000`
- Page: /datasets/visium-spatial-gene-expression-primary-motor-cortex-u5q9ptqrumd8bxh70000/
- Technology: Visium
- Organism: human
- Tissue: primary motor cortex
- Condition: progressive supranuclear palsy
- Modality: RNA
- Observations (spots): 3,837
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9097319
- Collections: [geo-gse302160](/collections/md/b.md#geo-gse302160)
- Load: `Catalog().dataset("U5q9pTqruMD8bXH70000").to_sdata()`


<a id="visium-spatial-gene-expression-lymph-node-kdvgduzzbvw0blvc0000"></a>
## Human lymph node

- uid: `kDVGDuzzbVw0BLvc0000`
- Page: /datasets/visium-spatial-gene-expression-lymph-node-kdvgduzzbvw0blvc0000/
- Technology: Visium
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: RNA
- Observations (spots): 135
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8324908
- Collections: [geo-gse269695](/collections/md/b.md#geo-gse269695)
- Load: `Catalog().dataset("kDVGDuzzbVw0BLvc0000").to_sdata()`


<a id="10x-xenium-corpus-striatum-itzp0pvpedwl4hu70000"></a>
## Human corpus striatum

- uid: `itZp0PVPEDWl4HU70000`
- Page: /datasets/10x-xenium-corpus-striatum-itzp0pvpedwl4hu70000/
- Technology: 10x Xenium
- Organism: human
- Tissue: corpus striatum
- Modality: RNA
- Observations (cells): 36,166
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE343854
- Load: `Catalog().dataset("itZp0PVPEDWl4HU70000").to_sdata()`


<a id="merfish-brain-tqyqrl1dfodhwgmf0000"></a>
## Mouse brain

- uid: `tQyqrl1dfodHWGMF0000`
- Page: /datasets/merfish-brain-tqyqrl1dfodhwgmf0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 10,401
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("tQyqrl1dfodHWGMF0000").to_sdata()`


<a id="vizgen-merscope-brain-6uutwvk1sdojwvsa0000"></a>
## Mouse brain

- uid: `6UuTWVk1sDojwvSa0000`
- Page: /datasets/vizgen-merscope-brain-6uutwvk1sdojwvsa0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 9,965
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("6UuTWVk1sDojwvSa0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-ymbfaaupvz2bpezb0000"></a>
## Macaque basal ganglion

- uid: `YmbfaaUpvZ2bPEZb0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-ymbfaaupvz2bpezb0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 48,225
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("YmbfaaUpvZ2bPEZb0000").to_sdata()`


<a id="mibi-tof-skin-of-body-f3i5xux2ey6gupmr0000"></a>
## Human skin of body

- uid: `f3i5xUx2eY6GUpMr0000`
- Page: /datasets/mibi-tof-skin-of-body-f3i5xux2ey6gupmr0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: skin of body
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 925
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("f3i5xUx2eY6GUpMr0000").to_sdata()`


<a id="mibi-tof-lymph-node-ssrvo6vk8mdmvbkm0000"></a>
## Human lymph node

- uid: `SSRVO6VK8mDmvBKM0000`
- Page: /datasets/mibi-tof-lymph-node-ssrvo6vk8mdmvbkm0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,009
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("SSRVO6VK8mDmvBKM0000").to_sdata()`


<a id="mibi-tof-breast-fcyolzbviyeh2fvq0000"></a>
## Human breast

- uid: `FcyOlZBVIYEH2Fvq0000`
- Page: /datasets/mibi-tof-breast-fcyolzbviyeh2fvq0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,506
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("FcyOlZBVIYEH2Fvq0000").to_sdata()`


<a id="mibi-tof-breast-fvf6hoa38upjjho00000"></a>
## Human breast

- uid: `fvF6HoA38uPJjho00000`
- Page: /datasets/mibi-tof-breast-fvf6hoa38upjjho00000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 6,423
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("fvF6HoA38uPJjho00000").to_sdata()`


<a id="10x-xenium-unknown-cewwfwq5gbwhym6h0000"></a>
## Human unknown

- uid: `cEWWFwq5GBwHYM6H0000`
- Page: /datasets/10x-xenium-unknown-cewwfwq5gbwhym6h0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: unknown
- Condition: neuroblastoma
- Modality: RNA
- Observations (cells): 709,176
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE331531
- Load: `Catalog().dataset("cEWWFwq5GBwHYM6H0000").to_sdata()`