# SpatialData-DB datasets, shard 78

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-brain-rqlbrkbzijxyi7bh0000"></a>
## Human brain

- uid: `RQLbrKbzIjXYi7BH0000`
- Page: /datasets/visium-spatial-gene-expression-brain-rqlbrkbzijxyi7bh0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,972
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/adult-human-brain-2-cerebral-cortex-unknown-orientation-stains-anti-snap-25-anti-nfh-1-standard-1-1-0
- Load: `Catalog().dataset("RQLbrKbzIjXYi7BH0000").to_sdata()`


<a id="visium-spatial-gene-expression-mammary-gland-su4lzn2lqhuybtgm0000"></a>
## Rat mammary gland

- uid: `su4lzN2LQHUYbtGM0000`
- Page: /datasets/visium-spatial-gene-expression-mammary-gland-su4lzn2lqhuybtgm0000/
- Technology: Visium
- Organism: rat
- Tissue: mammary gland
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 3,716
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253585
- Publication: https://doi.org/10.1016/j.ccell.2026.03.015
- Collections: [geo-gse253585](/collections/md/8.md#geo-gse253585)
- Load: `Catalog().dataset("su4lzN2LQHUYbtGM0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-txgwltstj3gabcbn0000"></a>
## Mouse colon

- uid: `txGwLtStj3gAbcbn0000`
- Page: /datasets/visium-spatial-gene-expression-colon-txgwltstj3gabcbn0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: adenocarcinoma
- Modality: RNA
- Observations (spots): 2,421
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211895
- Publication: https://doi.org/10.1016/j.crmeth.2022.100340
- Collections: [geo-gse211895](/collections/md/d.md#geo-gse211895)
- Load: `Catalog().dataset("txGwLtStj3gAbcbn0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-rcskvdtyakcwjaek0000"></a>
## Mouse brain

- uid: `RcSkVDTyAKCWJaEK0000`
- Page: /datasets/visium-spatial-gene-expression-brain-rcskvdtyakcwjaek0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,166
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319409
- Publication: https://doi.org/10.1186/s40478-025-02219-1
- Collections: [geo-gse319409](/collections/md/8.md#geo-gse319409)
- Load: `Catalog().dataset("RcSkVDTyAKCWJaEK0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-wkooutqhlrjmfgpd0000"></a>
## Human liver

- uid: `WKoouTQhLrjMfgPD0000`
- Page: /datasets/visium-spatial-gene-expression-liver-wkooutqhlrjmfgpd0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatoblastoma
- Modality: RNA
- Observations (spots): 337
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE261958
- Publication: https://doi.org/10.1016/j.jhep.2025.01.031
- Collections: [geo-gse261958](/collections/md/b.md#geo-gse261958)
- Load: `Catalog().dataset("WKoouTQhLrjMfgPD0000").to_sdata()`


<a id="spatial-transcriptomics-heart-rkziv4yc2osrxo4v0000"></a>
## Human heart

- uid: `RKziV4Yc2oSrXo4v0000`
- Page: /datasets/spatial-transcriptomics-heart-rkziv4yc2osrxo4v0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 55
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.sciencedirect.com/science/article/pii/S0092867419312826?via%3Dihub
- Publication: https://doi.org/10.1016/j.cell.2019.11.025
- Collections: [doi-10-1016-j-cell-2019-11-025](/collections/md/b.md#doi-10-1016-j-cell-2019-11-025)
- Load: `Catalog().dataset("RKziV4Yc2oSrXo4v0000").to_sdata()`


<a id="spatial-transcriptomics-brain-dibkitlqf56ixlyj0000"></a>
## Mouse brain

- uid: `DIbkITLqf56iXLYj0000`
- Page: /datasets/spatial-transcriptomics-brain-dibkitlqf56ixlyj0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 581
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("DIbkITLqf56iXLYj0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-fipkpbbvi8pmxi3t0000"></a>
## Mouse spinal cord

- uid: `FipkPBBVI8pMXi3T0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-fipkpbbvi8pmxi3t0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 276
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("FipkPBBVI8pMXi3T0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-sfbpsq3yvkqtud8j0000"></a>
## Mouse brain

- uid: `sfBPsq3YvkQtud8J0000`
- Page: /datasets/visium-spatial-gene-expression-brain-sfbpsq3yvkqtud8j0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,597
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE182127
- Publication: https://doi.org/10.1016/j.freeradbiomed.2021.11.011
- Collections: [geo-gse182127](/collections/md/9.md#geo-gse182127)
- Load: `Catalog().dataset("sfBPsq3YvkQtud8J0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-b0frpk6kic3awl5d0000"></a>
## Mouse skin of body

- uid: `B0frpk6KiC3AwL5D0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-b0frpk6kic3awl5d0000/
- Technology: Visium
- Organism: mouse
- Tissue: skin of body
- Condition: skin neoplasm
- Modality: RNA
- Observations (spots): 1,219
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235325
- Publication: https://doi.org/10.1038/s41586-024-07663-y
- Collections: [geo-gse235325](/collections/md/7.md#geo-gse235325)
- Load: `Catalog().dataset("B0frpk6KiC3AwL5D0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-qazlscoifzsciiy10000"></a>
## Mouse ovary

- uid: `QAzlScOIFzsCiIY10000`
- Page: /datasets/visium-spatial-gene-expression-ovary-qazlscoifzsciiy10000/
- Technology: Visium
- Organism: mouse
- Tissue: ovary
- Condition: ovarian cancer
- Modality: RNA
- Observations (spots): 2,329
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274509
- Publication: https://doi.org/10.21203/rs.3.rs-4940287/v1
- Collections: [geo-gse274509](/collections/md/a.md#geo-gse274509)
- Load: `Catalog().dataset("QAzlScOIFzsCiIY10000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-z98zwlnvbgppshzb0000"></a>
## Mouse pancreas

- uid: `z98ZWLNvBgPPshZb0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-z98zwlnvbgppshzb0000/
- Technology: Visium
- Organism: mouse
- Tissue: pancreas
- Modality: RNA
- Observations (spots): 1,400
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249121
- Publication: https://doi.org/10.1186/s13073-025-01452-6
- Collections: [geo-gse249121](/collections/md/d.md#geo-gse249121)
- Load: `Catalog().dataset("z98ZWLNvBgPPshZb0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-ubu9oddyhwmvfpm30000"></a>
## Human basal ganglion

- uid: `UBu9odDYhWmVfpm30000`
- Page: /datasets/vizgen-merscope-basal-ganglion-ubu9oddyhwmvfpm30000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 87,540
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("UBu9odDYhWmVfpm30000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-3adpgz6vegqrpxq30000"></a>
## Macaque colon

- uid: `3adPGZ6vEGqRpxQ30000`
- Page: /datasets/visium-spatial-gene-expression-colon-3adpgz6vegqrpxq30000/
- Technology: Visium
- Organism: macaque
- Tissue: colon
- Condition: simian immunodeficiency virus infection
- Modality: RNA
- Observations (spots): 2,031
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341607
- Publication: https://doi.org/10.3389/fimmu.2026.1862864
- Collections: [geo-gse341607](/collections/md/3.md#geo-gse341607)
- Load: `Catalog().dataset("3adPGZ6vEGqRpxQ30000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-knqwdtvdohdyad0r0000"></a>
## Human pancreas

- uid: `knQwDtvDOHDyad0R0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-knqwdtvdohdyad0r0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Modality: RNA
- Observations (spots): 6,641
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296626
- Publication: https://doi.org/10.1101/2025.05.19.654940
- Collections: [geo-gse296626](/collections/md/0.md#geo-gse296626)
- Load: `Catalog().dataset("knQwDtvDOHDyad0R0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-odtveb2cpvnhrd1n0000"></a>
## Human skin of body

- uid: `ODtVeb2CpVNHRd1N0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-odtveb2cpvnhrd1n0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous melanoma
- Modality: RNA
- Observations (spots): 4,115
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300445
- Publication: https://doi.org/10.1136/jitc-2025-014030
- Collections: [geo-gse300445](/collections/md/d.md#geo-gse300445)
- Load: `Catalog().dataset("ODtVeb2CpVNHRd1N0000").to_sdata()`


<a id="visium-spatial-gene-expression-amygdala-btplii4wi68ahanr0000"></a>
## Human amygdala

- uid: `BTplII4WI68aHaNR0000`
- Page: /datasets/visium-spatial-gene-expression-amygdala-btplii4wi68ahanr0000/
- Technology: Visium
- Organism: human
- Tissue: amygdala
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Collections: [geo-gse342709](/collections/md/a.md#geo-gse342709)
- Load: `Catalog().dataset("BTplII4WI68aHaNR0000").to_sdata()`


<a id="10x-xenium-skin-of-body-qidekej1hdhqi9vm0000"></a>
## Human skin of body

- uid: `qIDeKej1HdhQi9vm0000`
- Page: /datasets/10x-xenium-skin-of-body-qidekej1hdhqi9vm0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: melanoma
- Modality: RNA
- Observations (cells): 73,412
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316387
- Load: `Catalog().dataset("qIDeKej1HdhQi9vm0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-b0g7nrfg9o7qwgsu0000"></a>
## Mouse heart

- uid: `B0g7nrfG9O7Qwgsu0000`
- Page: /datasets/visium-spatial-gene-expression-heart-b0g7nrfg9o7qwgsu0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Modality: RNA
- Observations (spots): 1,127
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8806101
- Collections: [geo-gse290094](/collections/md/b.md#geo-gse290094)
- Load: `Catalog().dataset("B0g7nrfG9O7Qwgsu0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-xzlv4fpqmqu3vt7m0000"></a>
## Mouse lung

- uid: `xZlv4fpqMQu3VT7m0000`
- Page: /datasets/visium-spatial-gene-expression-lung-xzlv4fpqmqu3vt7m0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: osteosarcoma
- Modality: RNA
- Observations (spots): 1,652
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8478586
- Load: `Catalog().dataset("xZlv4fpqMQu3VT7m0000").to_sdata()`


<a id="merfish-brain-qy9kujiehxb0pket0000"></a>
## Mouse brain

- uid: `Qy9kuJIEhXb0pkEt0000`
- Page: /datasets/merfish-brain-qy9kujiehxb0pket0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 30,109
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("Qy9kuJIEhXb0pkEt0000").to_sdata()`


<a id="vizgen-merscope-brain-nnj38edipdxayysv0000"></a>
## Mouse brain

- uid: `nNj38edipdXAYysv0000`
- Page: /datasets/vizgen-merscope-brain-nnj38edipdxayysv0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 29,243
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("nNj38edipdXAYysv0000").to_sdata()`


<a id="mibi-tof-breast-5pnwo3b6xxwzwzqs0000"></a>
## Human breast

- uid: `5pNwo3B6XXWzWZQs0000`
- Page: /datasets/mibi-tof-breast-5pnwo3b6xxwzwzqs0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,506
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("5pNwo3B6XXWzWZQs0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-f42v1ynu1dw17jnv0000"></a>
## Human lymph node

- uid: `f42v1Ynu1dw17jnv0000`
- Page: /datasets/phenocycler-fusion-lymph-node-f42v1ynu1dw17jnv0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: protein
- Observations (cells): 11,974
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("f42v1Ynu1dw17jnv0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-xpcsioo0g52knhsk0000"></a>
## Macaque basal ganglion

- uid: `xPCSIoo0g52kNHsk0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-xpcsioo0g52knhsk0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 36,023
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("xPCSIoo0g52kNHsk0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-swzsarawxnohyiuq0000"></a>
## Human kidney

- uid: `swzSarAwXnoHYIuq0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-swzsarawxnohyiuq0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 15,960
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2025-12-16_02h03m37s
- Load: `Catalog().dataset("swzSarAwXnoHYIuq0000").to_sdata()`


<a id="vizgen-merscope-brain-phfz4ektqf958p2q0001"></a>
## Mouse brain

- uid: `phFZ4EktQf958P2q0001`
- Page: /datasets/vizgen-merscope-brain-phfz4ektqf958p2q0001/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 43,031
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("phFZ4EktQf958P2q0001").to_sdata()`


<a id="vizgen-merscope-brain-gn8goujrel0aqga50000"></a>
## Mouse brain

- uid: `gn8goujREL0AQGa50000`
- Page: /datasets/vizgen-merscope-brain-gn8goujrel0aqga50000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 8,579
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("gn8goujREL0AQGa50000").to_sdata()`


<a id="10x-xenium-brain-3yhyhacpd3qflpov0000"></a>
## Mouse brain

- uid: `3yhyhacPd3Qflpov0000`
- Page: /datasets/10x-xenium-brain-3yhyhacpd3qflpov0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 92,702
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337270
- Load: `Catalog().dataset("3yhyhacPd3Qflpov0000").to_sdata()`


<a id="10x-xenium-ileum-cl10vhcivkyu1dng0000"></a>
## Human ileum

- uid: `Cl10VHcivKYU1dNG0000`
- Page: /datasets/10x-xenium-ileum-cl10vhcivkyu1dng0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: ileum
- Condition: Crohn disease
- Modality: RNA
- Observations (cells): 26,561
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330953
- Publication: https://doi.org/10.1126/science.aeh7112
- Load: `Catalog().dataset("Cl10VHcivKYU1dNG0000").to_sdata()`