# SpatialData-DB datasets, shard 6a

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-brain-1akqzn54oskfrgyw0000"></a>
## Mouse brain

- uid: `1aKQZN54OskFrGyw0000`
- Page: /datasets/visium-spatial-gene-expression-brain-1akqzn54oskfrgyw0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,157
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148612
- Publication: https://doi.org/10.1038/s41593-021-00905-6
- Collections: [geo-gse165098](/collections/md/0.md#geo-gse165098)
- Load: `Catalog().dataset("1aKQZN54OskFrGyw0000").to_sdata()`


<a id="10x-xenium-colon-hxuglffurosfu2cc0000"></a>
## Human colon

- uid: `hXUgLFFUrOsFU2cC0000`
- Page: /datasets/10x-xenium-colon-hxuglffurosfu2cc0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: colon
- Condition: colorectal cancer
- Modality: RNA
- Observations (cells): 307,762
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/platforms/visium/product-family/dataset-human-crc
- Collections: [oliveira-2024-colorectal](/collections/md/b.md#oliveira-2024-colorectal)
- Load: `Catalog().dataset("hXUgLFFUrOsFU2cC0000").to_sdata()`


<a id="spatial-transcriptomics-prostate-gland-bq8adhdog5bzn2ke0000"></a>
## Human prostate gland

- uid: `BQ8ADhDOG5bZN2ke0000`
- Page: /datasets/spatial-transcriptomics-prostate-gland-bq8adhdog5bzn2ke0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 177
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482614/
- Publication: https://doi.org/10.1038/s41467-022-33069-3
- Collections: [doi-10-1038-s41467-022-33069-3](/collections/md/a.md#doi-10-1038-s41467-022-33069-3)
- Load: `Catalog().dataset("BQ8ADhDOG5bZN2ke0000").to_sdata()`


<a id="visium-spatial-gene-expression-bone-element-dckxkuceohwmbh6p0000"></a>
## Mouse bone element

- uid: `dCKxKuCEoHwmbh6P0000`
- Page: /datasets/visium-spatial-gene-expression-bone-element-dckxkuceohwmbh6p0000/
- Technology: Visium
- Organism: mouse
- Tissue: bone element
- Modality: RNA
- Observations (spots): 1,202
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-36071-5
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [doi-10-1038-s41467-023-36071-5](/collections/md/9.md#doi-10-1038-s41467-023-36071-5)
- Load: `Catalog().dataset("dCKxKuCEoHwmbh6P0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-6fk4nllhb8nkwkpo0000"></a>
## Mouse spinal cord

- uid: `6fK4nllHB8nKWKPO0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-6fk4nllhb8nkwkpo0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 212
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("6fK4nllHB8nKWKPO0000").to_sdata()`


<a id="visium-spatial-gene-expression-mammary-gland-oubf3tkdnjrrahqh0000"></a>
## Human mammary gland

- uid: `OUBF3TKDNjrrAHqh0000`
- Page: /datasets/visium-spatial-gene-expression-mammary-gland-oubf3tkdnjrrahqh0000/
- Technology: Visium
- Organism: human
- Tissue: mammary gland
- Condition: breast carcinoma
- Modality: RNA
- Observations (spots): 2,384
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203612
- Publication: https://doi.org/10.1038/s41588-022-01141-9
- Collections: [geo-gse203612](/collections/md/8.md#geo-gse203612)
- Load: `Catalog().dataset("OUBF3TKDNjrrAHqh0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-wgmz1do2ddktlh3w0000"></a>
## Human pancreas

- uid: `WgMz1do2dDKtLh3W0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-wgmz1do2ddktlh3w0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,783
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("WgMz1do2dDKtLh3W0000").to_sdata()`


<a id="visium-spatial-gene-expression-locus-ceruleus-qbjjzpn2cva5ibpb0000"></a>
## Human locus ceruleus

- uid: `QBJJZpN2cva5IBpB0000`
- Page: /datasets/visium-spatial-gene-expression-locus-ceruleus-qbjjzpn2cva5ibpb0000/
- Technology: Visium
- Organism: human
- Tissue: locus ceruleus
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307866
- Publication: https://doi.org/10.1101/2025.10.29.685354
- Collections: [geo-gse307866](/collections/md/9.md#geo-gse307866)
- Load: `Catalog().dataset("QBJJZpN2cva5IBpB0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-kxuud8cjxh1snmkf0000"></a>
## Human prostate gland

- uid: `KxUuD8CjXh1SNmKf0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-kxuud8cjxh1snmkf0000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 1,802
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("KxUuD8CjXh1SNmKf0000").to_sdata()`


<a id="10x-xenium-kidney-qhwlkupiwgrewxul0000"></a>
## Human kidney

- uid: `QhWLkUPIwgReWxUl0000`
- Page: /datasets/10x-xenium-kidney-qhwlkupiwgrewxul0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Condition: IgA glomerulonephritis
- Modality: RNA
- Observations (cells): 72,994
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE286186
- Collections: [geo-gse286184](/collections/md/4.md#geo-gse286184)
- Load: `Catalog().dataset("QhWLkUPIwgReWxUl0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-8nbnxboz2hfmmkzj0000"></a>
## Mouse brain

- uid: `8nBNxBOZ2HFmmkZj0000`
- Page: /datasets/visium-spatial-gene-expression-brain-8nbnxboz2hfmmkzj0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: tic disorder
- Modality: RNA
- Observations (spots): 3,294
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8604635
- Collections: [geo-gse280709](/collections/md/8.md#geo-gse280709)
- Load: `Catalog().dataset("8nBNxBOZ2HFmmkZj0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-bcgn2fitg3wbssq00000"></a>
## Mouse heart

- uid: `bCgn2fITG3WBSSq00000`
- Page: /datasets/visium-spatial-gene-expression-heart-bcgn2fitg3wbssq00000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Modality: RNA
- Observations (spots): 3,365
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("bCgn2fITG3WBSSq00000").to_sdata()`


<a id="visium-spatial-gene-expression-esophagus-m12mnh2gjfdtxu3g0000"></a>
## Mouse esophagus

- uid: `M12MNh2GjFdTXU3g0000`
- Page: /datasets/visium-spatial-gene-expression-esophagus-m12mnh2gjfdtxu3g0000/
- Technology: Visium
- Organism: mouse
- Tissue: esophagus
- Modality: RNA
- Observations (spots): 3,228
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE271795
- Publication: https://doi.org/10.1038/s41467-024-51559-4
- Collections: [geo-gse271795](/collections/md/b.md#geo-gse271795)
- Load: `Catalog().dataset("M12MNh2GjFdTXU3g0000").to_sdata()`


<a id="10x-xenium-brain-9cvzfsy8bvg7j4lf0000"></a>
## Mouse brain

- uid: `9cvzFsY8Bvg7j4lF0000`
- Page: /datasets/10x-xenium-brain-9cvzfsy8bvg7j4lf0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (cells): 37,985
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE266971
- Publication: https://doi.org/10.1016/j.ccell.2024.08.012
- Load: `Catalog().dataset("9cvzFsY8Bvg7j4lF0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-5lddwbqwrwufle0p0000"></a>
## Mouse brain

- uid: `5ldDWBqwRWUFLE0p0000`
- Page: /datasets/visium-spatial-gene-expression-brain-5lddwbqwrwufle0p0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: traumatic brain injury
- Modality: RNA
- Observations (spots): 2,499
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313407
- Publication: https://doi.org/10.1177/08977151251390528
- Collections: [geo-gse313407](/collections/md/3.md#geo-gse313407)
- Load: `Catalog().dataset("5ldDWBqwRWUFLE0p0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-ouzjrrknkhzikiii0000"></a>
## Macaque basal ganglion

- uid: `OuzjrRKNkhzIKiiI0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-ouzjrrknkhzikiii0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 5,492
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("OuzjrRKNkhzIKiiI0000").to_sdata()`


<a id="stereo-seq-kidney-eodet8ai0z4qsfe70000"></a>
## Mouse kidney

- uid: `eodET8aI0Z4QsFE70000`
- Page: /datasets/stereo-seq-kidney-eodet8ai0z4qsfe70000/
- Technology: Stereo-seq
- Organism: mouse
- Tissue: kidney
- Modality: RNA
- Observations: 156,908
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333479
- Collections: [geo-gse333479](/collections/md/4.md#geo-gse333479)
- Load: `Catalog().dataset("eodET8aI0Z4QsFE70000").to_sdata()`


<a id="mibi-tof-breast-5ciqimaacxyjdk2o0000"></a>
## Human breast

- uid: `5CIqimaaCXyJDk2o0000`
- Page: /datasets/mibi-tof-breast-5ciqimaacxyjdk2o0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 6,870
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("5CIqimaaCXyJDk2o0000").to_sdata()`


<a id="mibi-tof-breast-kbtbutcmgofdnsfl0000"></a>
## Human breast

- uid: `KbtbUtcMGofdnSfL0000`
- Page: /datasets/mibi-tof-breast-kbtbutcmgofdnsfl0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,826
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("KbtbUtcMGofdnSfL0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-pancreas-arsoyo3gjrncd9gq0000"></a>
## Human pancreas

- uid: `ARsOYO3GJrNCd9Gq0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-pancreas-arsoyo3gjrncd9gq0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: pancreas
- Modality: Metabolomics
- Observations: 139,725
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-07-05_22h26m29s
- Load: `Catalog().dataset("ARsOYO3GJrNCd9Gq0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-ny8prs4oiwl1urvf0000"></a>
## Human kidney

- uid: `NY8PRs4oIWl1URvF0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-ny8prs4oiwl1urvf0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 3,666
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-08-21_21h13m45s
- Load: `Catalog().dataset("NY8PRs4oIWl1URvF0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-kbb7rq0gd5u8nral0000"></a>
## Human kidney

- uid: `KBb7RQ0GD5U8NRAl0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-kbb7rq0gd5u8nral0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 6,307
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-02-17_21h57m08s
- Load: `Catalog().dataset("KBb7RQ0GD5U8NRAl0000").to_sdata()`


<a id="vizgen-merscope-middle-temporal-gyrus-frdf0cun8jje89wt0000"></a>
## Human middle temporal gyrus

- uid: `frdf0CUN8jje89wt0000`
- Page: /datasets/vizgen-merscope-middle-temporal-gyrus-frdf0cun8jje89wt0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: middle temporal gyrus
- Condition: Alzheimer disease
- Modality: RNA
- Observations (cells): 12,135
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://portal.brain-map.org/explore/seattle-alzheimers-disease
- Publication: https://doi.org/10.1038/s41593-024-01774-5
- Collections: [seaad-mtg-merfish](/collections/md/6.md#seaad-mtg-merfish)
- Load: `Catalog().dataset("frdf0CUN8jje89wt0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-3jxmcd6rjwcozrm90000"></a>
## Human lymph node

- uid: `3JxMcd6RJWCOzrM90000`
- Page: /datasets/phenocycler-fusion-lymph-node-3jxmcd6rjwcozrm90000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 20,188
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("3JxMcd6RJWCOzrM90000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-xs6gvvaf65nnlgp70000"></a>
## Human skin of body

- uid: `xS6gVVaF65nNlGp70000`
- Page: /datasets/vizgen-merscope-skin-of-body-xs6gvvaf65nnlgp70000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 15,626
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("xS6gVVaF65nNlGp70000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-apsmvfnfbsluazro0000"></a>
## Human lymph node

- uid: `ApsMvFnFbsLuazRo0000`
- Page: /datasets/phenocycler-fusion-lymph-node-apsmvfnfbsluazro0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 18,731
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("ApsMvFnFbsLuazRo0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-unhwiqegtnrfjrty0000"></a>
## Human lymph node

- uid: `uNHWIqEGtnrFjRTY0000`
- Page: /datasets/phenocycler-fusion-lymph-node-unhwiqegtnrfjrty0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 14,402
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("uNHWIqEGtnrFjRTY0000").to_sdata()`


<a id="10x-xenium-heart-6gko74885vglkxdm0000"></a>
## Human heart

- uid: `6gKo74885vGLKxDM0000`
- Page: /datasets/10x-xenium-heart-6gko74885vglkxdm0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: heart
- Condition: cardiac sarcoidosis
- Modality: RNA
- Observations (cells): 25,920
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319771
- Publication: https://doi.org/10.1161/CIRCULATIONAHA.126.079304
- Load: `Catalog().dataset("6gKo74885vGLKxDM0000").to_sdata()`


<a id="vizgen-merscope-brain-0rvg9bh7zkushez00000"></a>
## Mouse brain

- uid: `0rvG9bH7ZkUSHeZ00000`
- Page: /datasets/vizgen-merscope-brain-0rvg9bh7zkushez00000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 12,673
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("0rvG9bH7ZkUSHeZ00000").to_sdata()`


<a id="10x-xenium-brain-3h6ekgz2ts9fy8w50000"></a>
## Mouse brain

- uid: `3h6ekgZ2Ts9fy8W50000`
- Page: /datasets/10x-xenium-brain-3h6ekgz2ts9fy8w50000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Condition: diffuse midline glioma, H3 K27-altered
- Modality: RNA
- Observations (cells): 226,967
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299434
- Publication: https://doi.org/10.1126/scitranslmed.adr1557
- Load: `Catalog().dataset("3h6ekgZ2Ts9fy8W50000").to_sdata()`