# SpatialData-DB datasets, shard 69

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-brainstem-j7baswv6pbpu9sa10000"></a>
## Rat brainstem

- uid: `J7BASwV6pbPu9SA10000`
- Page: /datasets/visium-spatial-gene-expression-brainstem-j7baswv6pbpu9sa10000/
- Technology: Visium
- Organism: rat
- Tissue: brainstem
- Modality: RNA
- Observations (spots): 2,084
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260847
- Publication: https://doi.org/10.1016/j.isci.2024.110549
- Collections: [geo-gse260847](/collections/md/4.md#geo-gse260847)
- Load: `Catalog().dataset("J7BASwV6pbPu9SA10000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-bsz0zhgl6ecm9f5j0000"></a>
## Mouse colon

- uid: `bSZ0ZHgL6ecm9f5J0000`
- Page: /datasets/visium-spatial-gene-expression-colon-bsz0zhgl6ecm9f5j0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colitis
- Modality: RNA
- Observations (spots): 7,147
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334067
- Publication: https://doi.org/10.1038/s41588-026-02673-0
- Collections: [geo-gse334067](/collections/md/b.md#geo-gse334067)
- Load: `Catalog().dataset("bSZ0ZHgL6ecm9f5J0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-2appbcfldbrafzdz0000"></a>
## Human intestine

- uid: `2apPBcFlDbrAfzDZ0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-2appbcfldbrafzdz0000/
- Technology: Visium
- Organism: human
- Tissue: intestine
- Condition: colon adenocarcinoma
- Modality: RNA
- Observations (spots): 1,165
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.cell.com/cell/fulltext/S0092-8674(23)01222-9?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867423012229%3Fshowall%3Dtrue#secsectitle0020
- Publication: https://doi.org/10.1016/j.cell.2023.11.006
- Collections: [doi-10-1016-j-cell-2023-11-006](/collections/md/1.md#doi-10-1016-j-cell-2023-11-006)
- Load: `Catalog().dataset("2apPBcFlDbrAfzDZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-hkhrgahegu5mxxsl0000"></a>
## Human brain

- uid: `hkhRgAhegu5MxXSl0000`
- Page: /datasets/visium-spatial-gene-expression-brain-hkhrgahegu5mxxsl0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (spots): 979
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://academic.oup.com/neuro-oncology/article/24/Supplement_1/i45/6600572
- Publication: https://doi.org/10.1093/neuonc/noac079.165
- Collections: [doi-10-1093-neuonc-noac079-165](/collections/md/6.md#doi-10-1093-neuonc-noac079-165)
- Load: `Catalog().dataset("hkhRgAhegu5MxXSl0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-dcnmst07isc5xnfd0000"></a>
## Human heart

- uid: `DCnMST07isc5XNFd0000`
- Page: /datasets/visium-spatial-gene-expression-heart-dcnmst07isc5xnfd0000/
- Technology: Visium
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 1,302
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-023-06311-1#data-availability
- Publication: https://doi.org/10.1038/s41586-023-06311-1
- Collections: [doi-10-1038-s41586-023-06311-1](/collections/md/f.md#doi-10-1038-s41586-023-06311-1)
- Load: `Catalog().dataset("DCnMST07isc5XNFd0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-vj9lpni3wiq4qowl0000"></a>
## Human brain

- uid: `VJ9LPNI3WIQ4qOWl0000`
- Page: /datasets/visium-spatial-gene-expression-brain-vj9lpni3wiq4qowl0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 2,320
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235672
- Publication: https://doi.org/10.1038/s43018-023-00598-9
- Collections: [geo-gse235672](/collections/md/b.md#geo-gse235672)
- Load: `Catalog().dataset("VJ9LPNI3WIQ4qOWl0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-d8eojjwnuikofwxi0000"></a>
## Mouse colon

- uid: `d8EojjWNuiKOfwXi0000`
- Page: /datasets/visium-spatial-gene-expression-colon-d8eojjwnuikofwxi0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colorectal carcinoma
- Modality: RNA
- Observations (spots): 2,221
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205306
- Publication: https://doi.org/10.1038/s41416-024-02617-7
- Collections: [geo-gse205306](/collections/md/1.md#geo-gse205306)
- Load: `Catalog().dataset("d8EojjWNuiKOfwXi0000").to_sdata()`


<a id="10x-xenium-uterus-v7axb2eihvu8y0n60000"></a>
## Mouse uterus

- uid: `v7Axb2EIHvu8y0n60000`
- Page: /datasets/10x-xenium-uterus-v7axb2eihvu8y0n60000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: uterus
- Modality: RNA
- Observations (cells): 367,168
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9457935
- Publication: https://doi.org/10.1073/pnas.2600524123
- Collections: [geo-gse316662](/collections/md/f.md#geo-gse316662)
- Load: `Catalog().dataset("v7Axb2EIHvu8y0n60000").to_sdata()`


<a id="visium-spatial-gene-expression-small-intestine-h4xickurgwpgdvuw0000"></a>
## Human small intestine

- uid: `h4xICkuRgWPgDVuW0000`
- Page: /datasets/visium-spatial-gene-expression-small-intestine-h4xickurgwpgdvuw0000/
- Technology: Visium
- Organism: human
- Tissue: small intestine
- Condition: Crohn disease
- Modality: RNA
- Observations (spots): 3,481
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE289496
- Publication: https://doi.org/10.1038/s12276-026-01763-7
- Load: `Catalog().dataset("h4xICkuRgWPgDVuW0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-englsgy128xa7skh0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `eNGlSgy128XA7SKH0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-englsgy128xa7skh0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: bipolar disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("eNGlSgy128XA7SKH0000").to_sdata()`


<a id="10x-xenium-ovary-u8ns7yfoxtrkigjo0001"></a>
## Human ovary

- uid: `U8NS7yFoxtrKiGJO0001`
- Page: /datasets/10x-xenium-ovary-u8ns7yfoxtrkigjo0001/
- Technology: 10x Xenium
- Organism: human
- Tissue: ovary
- Condition: adenocarcinoma
- Modality: RNA
- Observations (cells): 1,157,659
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/xenium-prime-fresh-frozen-human-ovary
- Load: `Catalog().dataset("U8NS7yFoxtrKiGJO0001").to_sdata()`


<a id="visium-spatial-gene-expression-liver-05motgbmjmunyc0j0000"></a>
## Human liver

- uid: `05mOTgbMjmunYc0j0000`
- Page: /datasets/visium-spatial-gene-expression-liver-05motgbmjmunyc0j0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: colorectal cancer
- Modality: RNA
- Observations (spots): 2,887
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6716963
- Collections: [geo-gse217414](/collections/md/8.md#geo-gse217414)
- Load: `Catalog().dataset("05mOTgbMjmunYc0j0000").to_sdata()`


<a id="10x-xenium-brain-daj3knbtmrfdupem0000"></a>
## Human brain

- uid: `DAj3kNBtmrFDuPEM0000`
- Page: /datasets/10x-xenium-brain-daj3knbtmrfdupem0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (cells): 25,950
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE339006
- Load: `Catalog().dataset("DAj3kNBtmrFDuPEM0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-zkwmgonr1rqzpsd70000"></a>
## Human pancreas

- uid: `ZKwMGONr1RQZPsd70000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-zkwmgonr1rqzpsd70000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 4,987
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8443449
- Collections: [geo-gse274103](/collections/md/e.md#geo-gse274103)
- Load: `Catalog().dataset("ZKwMGONr1RQZPsd70000").to_sdata()`


<a id="visium-spatial-gene-expression-ectocervix-crl0qega9bgxadnz0000"></a>
## Human ectocervix

- uid: `CrL0QeGa9BGXaDnz0000`
- Page: /datasets/visium-spatial-gene-expression-ectocervix-crl0qega9bgxadnz0000/
- Technology: Visium
- Organism: human
- Tissue: ectocervix
- Modality: RNA
- Observations (spots): 1,431
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8811058
- Collections: [geo-gse290350](/collections/md/0.md#geo-gse290350)
- Load: `Catalog().dataset("CrL0QeGa9BGXaDnz0000").to_sdata()`


<a id="visium-spatial-gene-expression-unknown-ogteomcq9i4tozwk0000"></a>
## Human unknown

- uid: `OgtEOmCQ9I4tOZwk0000`
- Page: /datasets/visium-spatial-gene-expression-unknown-ogteomcq9i4tozwk0000/
- Technology: Visium
- Organism: human
- Tissue: unknown
- Condition: diffuse large B-cell lymphoma
- Modality: RNA
- Observations (spots): 12,451
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9980529
- Collections: [geo-gse344506](/collections/md/1.md#geo-gse344506)
- Load: `Catalog().dataset("OgtEOmCQ9I4tOZwk0000").to_sdata()`


<a id="merfish-brain-jgmko3drrkpijqdb0000"></a>
## Mouse brain

- uid: `jgmKo3DrRKpiJQdb0000`
- Page: /datasets/merfish-brain-jgmko3drrkpijqdb0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 25,450
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("jgmKo3DrRKpiJQdb0000").to_sdata()`


<a id="merfish-brain-tcdxthjgh7q2sye30000"></a>
## Mouse brain

- uid: `tCDxTHJGH7q2SyE30000`
- Page: /datasets/merfish-brain-tcdxthjgh7q2sye30000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 8,029
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("tCDxTHJGH7q2SyE30000").to_sdata()`


<a id="merfish-brain-nwjffzincxnm7plb0000"></a>
## Mouse brain

- uid: `NwjFfZINCxNM7PlB0000`
- Page: /datasets/merfish-brain-nwjffzincxnm7plb0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 13,488
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("NwjFfZINCxNM7PlB0000").to_sdata()`


<a id="merfish-brain-lwb1b6qzkyjrhzfa0000"></a>
## Mouse brain

- uid: `Lwb1b6qZkYjRhZFA0000`
- Page: /datasets/merfish-brain-lwb1b6qzkyjrhzfa0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 11,697
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("Lwb1b6qZkYjRhZFA0000").to_sdata()`


<a id="mibi-tof-breast-sw63qvyyscpldwmk0000"></a>
## Human breast

- uid: `sW63qVyySCPLdwMK0000`
- Page: /datasets/mibi-tof-breast-sw63qvyyscpldwmk0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,719
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("sW63qVyySCPLdwMK0000").to_sdata()`


<a id="vizgen-merscope-brain-7yypd17qm9crvczz0000"></a>
## Mouse brain

- uid: `7yyPD17qM9CrVCzz0000`
- Page: /datasets/vizgen-merscope-brain-7yypd17qm9crvczz0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 10,005
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("7yyPD17qM9CrVCzz0000").to_sdata()`


<a id="10x-xenium-skin-of-body-mdidslk3jg2ugo3k0000"></a>
## Human skin of body

- uid: `MdiDSlK3jg2Ugo3K0000`
- Page: /datasets/10x-xenium-skin-of-body-mdidslk3jg2ugo3k0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: drug allergy
- Modality: RNA
- Observations (cells): 8,409
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE309154
- Load: `Catalog().dataset("MdiDSlK3jg2Ugo3K0000").to_sdata()`


<a id="10x-xenium-common-carotid-artery-plus-branches-hlylynxmyp9kkdg70000"></a>
## Human common carotid artery plus branches

- uid: `hlYlynxMYP9KkDg70000`
- Page: /datasets/10x-xenium-common-carotid-artery-plus-branches-hlylynxmyp9kkdg70000/
- Technology: 10x Xenium
- Organism: human
- Tissue: common carotid artery plus branches
- Condition: atherosclerosis
- Modality: RNA
- Observations (cells): 24,963
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294466
- Publication: https://doi.org/10.1038/s41467-025-67679-4
- Load: `Catalog().dataset("hlYlynxMYP9KkDg70000").to_sdata()`