# SpatialData-DB datasets, shard 5d

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="spatial-transcriptomics-spinal-cord-mllequpjp5gyntin0000"></a>
## Mouse spinal cord

- uid: `MlLequPJp5GyntIN0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-mllequpjp5gyntin0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 297
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("MlLequPJp5GyntIN0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-sa4ylcqxyxxctwaf0000"></a>
## Mouse spinal cord

- uid: `sa4YLCQXYxxctwaf0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-sa4ylcqxyxxctwaf0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 277
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("sa4YLCQXYxxctwaf0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-dbboglwryg2kqmhj0000"></a>
## Mouse spinal cord

- uid: `DbbogLwRyG2KQmhj0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-dbboglwryg2kqmhj0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 349
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("DbbogLwRyG2KQmhj0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-hvbqdigjtskljxlp0000"></a>
## Human heart

- uid: `HVbqdIgjTSkLJxLp0000`
- Page: /datasets/visium-spatial-gene-expression-heart-hvbqdigjtskljxlp0000/
- Technology: Visium
- Organism: human
- Tissue: heart
- Modality: RNA
- Observations (spots): 3,430
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-023-06311-1#data-availability
- Publication: https://doi.org/10.1038/s41586-023-06311-1
- Collections: [doi-10-1038-s41586-023-06311-1](/collections/md/f.md#doi-10-1038-s41586-023-06311-1)
- Load: `Catalog().dataset("HVbqdIgjTSkLJxLp0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-pyjdgbypxx0jtfg60000"></a>
## Human breast

- uid: `PyjdgbYpxX0jTfg60000`
- Page: /datasets/visium-spatial-gene-expression-breast-pyjdgbypxx0jtfg60000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: breast cancer
- Modality: RNA
- Observations (spots): 2,885
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242311
- Publication: https://doi.org/10.3390/ijms252011109
- Collections: [geo-gse242311](/collections/md/f.md#geo-gse242311)
- Load: `Catalog().dataset("PyjdgbYpxX0jTfg60000").to_sdata()`


<a id="10x-xenium-kidney-3ba4j0qzf4uxe02l0000"></a>
## Mouse kidney

- uid: `3ba4J0QZF4uXE02L0000`
- Page: /datasets/10x-xenium-kidney-3ba4j0qzf4uxe02l0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: kidney
- Modality: RNA
- Observations (cells): 244,107
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9428102
- Collections: [geo-gse315435](/collections/md/f.md#geo-gse315435)
- Load: `Catalog().dataset("3ba4J0QZF4uXE02L0000").to_sdata()`


<a id="visium-spatial-gene-expression-mesenteric-lymph-node-xrr2nuhqjqzzgaq40000"></a>
## Mouse mesenteric lymph node

- uid: `XrR2nUhqjqzZgAQ40000`
- Page: /datasets/visium-spatial-gene-expression-mesenteric-lymph-node-xrr2nuhqjqzzgaq40000/
- Technology: Visium
- Organism: mouse
- Tissue: mesenteric lymph node
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260998
- Publication: https://doi.org/10.21203/rs.3.rs-4093618/v1
- Collections: [geo-gse260998](/collections/md/2.md#geo-gse260998)
- Load: `Catalog().dataset("XrR2nUhqjqzZgAQ40000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-jowxkzxscxmb9sr30000"></a>
## Mouse pancreas

- uid: `jOWxKzxScxmb9sr30000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-jowxkzxscxmb9sr30000/
- Technology: Visium
- Organism: mouse
- Tissue: pancreas
- Modality: RNA
- Observations (spots): 3,112
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249121
- Publication: https://doi.org/10.1186/s13073-025-01452-6
- Collections: [geo-gse249121](/collections/md/d.md#geo-gse249121)
- Load: `Catalog().dataset("jOWxKzxScxmb9sr30000").to_sdata()`


<a id="10x-xenium-hair-follicle-izufgbwgr6inopcs0000"></a>
## Mouse hair follicle

- uid: `iZuFGBWGr6INOpcs0000`
- Page: /datasets/10x-xenium-hair-follicle-izufgbwgr6inopcs0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: hair follicle
- Condition: injury
- Modality: RNA
- Observations (cells): 16,368
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8546228
- Publication: https://doi.org/10.1172/JCI172595
- Collections: [geo-gse278431](/collections/md/c.md#geo-gse278431)
- Load: `Catalog().dataset("iZuFGBWGr6INOpcs0000").to_sdata()`


<a id="spatial-transcriptomics-brain-rnorcmujsmjoi8ba0002"></a>
## Mouse brain

- uid: `rnORcmUjsmjOi8Ba0002`
- Page: /datasets/spatial-transcriptomics-brain-rnorcmujsmjoi8ba0002/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 188
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("rnORcmUjsmjOi8Ba0002").to_sdata()`


<a id="visium-spatial-gene-expression-liver-uthanvtjkkqqrgy60000"></a>
## Human liver

- uid: `uthanvtJKkqqrgy60000`
- Page: /datasets/visium-spatial-gene-expression-liver-uthanvtjkkqqrgy60000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatocellular carcinoma
- Modality: RNA
- Observations (spots): 1,265
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE281759
- Publication: https://doi.org/10.1016/j.jhepr.2026.101790
- Collections: [geo-gse281759](/collections/md/3.md#geo-gse281759)
- Load: `Catalog().dataset("uthanvtJKkqqrgy60000").to_sdata()`


<a id="10x-xenium-brain-8fimvt6p8vbaoxly0000"></a>
## Golden hamster brain

- uid: `8fimVt6p8VBaoXlY0000`
- Page: /datasets/10x-xenium-brain-8fimvt6p8vbaoxly0000/
- Technology: 10x Xenium
- Organism: golden hamster
- Tissue: brain
- Modality: RNA
- Observations (cells): 510,268
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM10002165
- Collections: [geo-gse345359](/collections/md/f.md#geo-gse345359)
- Load: `Catalog().dataset("8fimVt6p8VBaoXlY0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-kspzsdtlwnuykrj10000"></a>
## Human skin of body

- uid: `kspZSdTlwnUYKrJ10000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-kspzsdtlwnuykrj10000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous leishmaniasis
- Modality: RNA
- Observations (spots): 401
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE317987
- Publication: https://doi.org/10.3389/fimmu.2026.1870524
- Collections: [geo-gse317987](/collections/md/a.md#geo-gse317987)
- Load: `Catalog().dataset("kspZSdTlwnUYKrJ10000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-9mxwzubwjc12pguc0000"></a>
## Mouse colon

- uid: `9mxWzUBwjC12pguc0000`
- Page: /datasets/visium-spatial-gene-expression-colon-9mxwzubwjc12pguc0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Modality: RNA
- Observations (spots): 3,052
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7103780
- Collections: [geo-gse227598](/collections/md/2.md#geo-gse227598)
- Load: `Catalog().dataset("9mxWzUBwjC12pguc0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-yibjobcjwoah0qa40000"></a>
## Human lung

- uid: `YIBjOBCJWoah0qA40000`
- Page: /datasets/visium-spatial-gene-expression-lung-yibjobcjwoah0qa40000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (spots): 4,409
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE271370
- Collections: [geo-gse271370](/collections/md/5.md#geo-gse271370)
- Load: `Catalog().dataset("YIBjOBCJWoah0qA40000").to_sdata()`


<a id="visium-spatial-gene-expression-right-atrium-auricular-region-09ikm0ytcchlhhwa0000"></a>
## Human right atrium auricular region

- uid: `09IKm0YtccHlhHWa0000`
- Page: /datasets/visium-spatial-gene-expression-right-atrium-auricular-region-09ikm0ytcchlhhwa0000/
- Technology: Visium
- Organism: human
- Tissue: right atrium auricular region
- Condition: cardiomyopathy
- Modality: RNA
- Observations (spots): 2,153
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9746006
- Collections: [geo-gse331446](/collections/md/8.md#geo-gse331446)
- Load: `Catalog().dataset("09IKm0YtccHlhHWa0000").to_sdata()`


<a id="10x-xenium-breast-r8l8lvxszssmjro40001"></a>
## Human breast

- uid: `R8L8lvXszssMJRo40001`
- Page: /datasets/10x-xenium-breast-r8l8lvxszssmjro40001/
- Technology: 10x Xenium
- Organism: human
- Tissue: breast
- Modality: RNA
- Observations (cells): 335,709
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/xenium-ffpe-human-breast-biomarkers
- Collections: [10x-xenium-ffpe-human-breast-biomarkers](/collections/md/3.md#10x-xenium-ffpe-human-breast-biomarkers)
- Load: `Catalog().dataset("R8L8lvXszssMJRo40001").to_sdata()`


<a id="visium-spatial-gene-expression-lung-cyqw6ucknh3nqmlj0000"></a>
## Human lung

- uid: `CYqw6UckNH3NqMLj0000`
- Page: /datasets/visium-spatial-gene-expression-lung-cyqw6ucknh3nqmlj0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: COVID-19
- Modality: RNA
- Observations (spots): 4,620
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE271370
- Collections: [geo-gse271370](/collections/md/5.md#geo-gse271370)
- Load: `Catalog().dataset("CYqw6UckNH3NqMLj0000").to_sdata()`


<a id="10x-xenium-lung-lexgum7svifnhr2s0000"></a>
## Human lung

- uid: `LEXgum7sViFNHr2s0000`
- Page: /datasets/10x-xenium-lung-lexgum7svifnhr2s0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Condition: non-small cell lung carcinoma
- Modality: RNA
- Observations (cells): 545,933
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE320142
- Publication: https://doi.org/10.1038/s41467-026-72036-0
- Load: `Catalog().dataset("LEXgum7sViFNHr2s0000").to_sdata()`


<a id="10x-xenium-pleura-2varu0xmyat8gjia0000"></a>
## Human pleura

- uid: `2vaRU0xmyAt8GJIA0000`
- Page: /datasets/10x-xenium-pleura-2varu0xmyat8gjia0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: pleura
- Condition: pleural mesothelioma
- Modality: RNA
- Observations (cells): 145,692
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300007
- Publication: https://doi.org/10.1038/s41467-025-63414-1
- Load: `Catalog().dataset("2vaRU0xmyAt8GJIA0000").to_sdata()`


<a id="10x-xenium-skin-of-back-bcxzyyxqyvhxb3xw0000"></a>
## Mouse skin of back

- uid: `BcxZyYXQyVHXb3xw0000`
- Page: /datasets/10x-xenium-skin-of-back-bcxzyyxqyvhxb3xw0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: skin of back
- Modality: RNA
- Observations (cells): 174,241
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE280069
- Publication: https://doi.org/10.1172/jci.insight.182844
- Collections: [geo-gse280069](/collections/md/6.md#geo-gse280069)
- Load: `Catalog().dataset("BcxZyYXQyVHXb3xw0000").to_sdata()`


<a id="visium-spatial-gene-expression-amygdala-ypbh4qq84awaotip0000"></a>
## Human amygdala

- uid: `yPBH4Qq84AWaoTIp0000`
- Page: /datasets/visium-spatial-gene-expression-amygdala-ypbh4qq84awaotip0000/
- Technology: Visium
- Organism: human
- Tissue: amygdala
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Collections: [geo-gse342709](/collections/md/a.md#geo-gse342709)
- Load: `Catalog().dataset("yPBH4Qq84AWaoTIp0000").to_sdata()`


<a id="10x-xenium-lung-yqu3tzkpjmom6d790000"></a>
## Mouse lung

- uid: `YQu3tzKpJMOM6d790000`
- Page: /datasets/10x-xenium-lung-yqu3tzkpjmom6d790000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lung
- Condition: small cell lung carcinoma
- Modality: RNA
- Observations (cells): 154,818
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299069
- Publication: https://doi.org/10.1038/s41467-025-67078-9
- Load: `Catalog().dataset("YQu3tzKpJMOM6d790000").to_sdata()`


<a id="vizgen-merscope-brain-zbrp2hnfy44se0640000"></a>
## Mouse brain

- uid: `ZBRp2hNFy44SE0640000`
- Page: /datasets/vizgen-merscope-brain-zbrp2hnfy44se0640000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 16,305
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("ZBRp2hNFy44SE0640000").to_sdata()`


<a id="mibi-tof-breast-wgthol1lukcw2d9i0000"></a>
## Human breast

- uid: `wGtHol1LuKcw2d9I0000`
- Page: /datasets/mibi-tof-breast-wgthol1lukcw2d9i0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,451
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("wGtHol1LuKcw2d9I0000").to_sdata()`


<a id="vizgen-merscope-brain-6ke9abuigxs6z5lu0000"></a>
## Mouse brain

- uid: `6Ke9aBUIgXS6Z5lu0000`
- Page: /datasets/vizgen-merscope-brain-6ke9abuigxs6z5lu0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 271,192
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269617
- Load: `Catalog().dataset("6Ke9aBUIgXS6Z5lu0000").to_sdata()`


<a id="vizgen-merscope-middle-temporal-gyrus-hosv6bkbkhptbl8g0000"></a>
## Human middle temporal gyrus

- uid: `HOsv6bkBKHpTBL8G0000`
- Page: /datasets/vizgen-merscope-middle-temporal-gyrus-hosv6bkbkhptbl8g0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: middle temporal gyrus
- Condition: Alzheimer disease
- Modality: RNA
- Observations (cells): 7,170
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://portal.brain-map.org/explore/seattle-alzheimers-disease
- Publication: https://doi.org/10.1038/s41593-024-01774-5
- Collections: [seaad-mtg-merfish](/collections/md/6.md#seaad-mtg-merfish)
- Load: `Catalog().dataset("HOsv6bkBKHpTBL8G0000").to_sdata()`


<a id="mibi-tof-lymph-node-y91fkshmnyovv0rp0000"></a>
## Human lymph node

- uid: `Y91fkSHmNyovV0RP0000`
- Page: /datasets/mibi-tof-lymph-node-y91fkshmnyovv0rp0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,882
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("Y91fkSHmNyovV0RP0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-0fexv6aphslw5m3w0000"></a>
## Human lymph node

- uid: `0FeXV6APhSLW5m3w0000`
- Page: /datasets/phenocycler-fusion-lymph-node-0fexv6aphslw5m3w0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 16,920
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("0FeXV6APhSLW5m3w0000").to_sdata()`


<a id="10x-xenium-dorsolateral-prefrontal-cortex-9a7vynrxp5f7bmem0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `9A7VynrXP5F7bMEM0000`
- Page: /datasets/10x-xenium-dorsolateral-prefrontal-cortex-9a7vynrxp5f7bmem0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Modality: RNA
- Observations (cells): 59,438
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307404
- Load: `Catalog().dataset("9A7VynrXP5F7bMEM0000").to_sdata()`