# SpatialData-DB datasets, shard 58

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-hd-ovary-9ddoddvuaeavydvo0000"></a>
## Human ovary

- uid: `9DDodDVUAeavydvo0000`
- Page: /datasets/visium-hd-ovary-9ddoddvuaeavydvo0000/
- Technology: Visium HD
- Organism: human
- Tissue: ovary
- Condition: clear cell adenocarcinoma
- Modality: RNA
- Observations (bins): 451,466
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/visium-hd-three-prime-ovarian-cancer-fresh-frozen
- Load: `Catalog().dataset("9DDodDVUAeavydvo0000").to_sdata()`


<a id="visium-spatial-gene-expression-zone-of-skin-ocooietbyk15jvif0000"></a>
## Human zone of skin

- uid: `oCOOiEtBYK15jvif0000`
- Page: /datasets/visium-spatial-gene-expression-zone-of-skin-ocooietbyk15jvif0000/
- Technology: Visium
- Organism: human
- Tissue: zone of skin
- Condition: systemic sclerosis
- Modality: RNA
- Observations (spots): 4,957
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312129
- Publication: https://doi.org/10.1172/jci.insight.198954
- Collections: [geo-gse312129](/collections/md/a.md#geo-gse312129)
- Load: `Catalog().dataset("oCOOiEtBYK15jvif0000").to_sdata()`


<a id="visium-spatial-gene-expression-thymus-mzqkfmqzfcm5aypq0000"></a>
## Mouse thymus

- uid: `mzqKFmqZFCm5aYpQ0000`
- Page: /datasets/visium-spatial-gene-expression-thymus-mzqkfmqzfcm5aypq0000/
- Technology: Visium
- Organism: mouse
- Tissue: thymus
- Condition: asthma
- Modality: RNA
- Observations (spots): 3,189
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE227332
- Publication: https://doi.org/10.1126/sciimmunol.adi9066
- Collections: [geo-gse227332](/collections/md/f.md#geo-gse227332)
- Load: `Catalog().dataset("mzqKFmqZFCm5aYpQ0000").to_sdata()`


<a id="spatial-transcriptomics-prostate-gland-j44oeqwwnp0u8pnj0000"></a>
## Human prostate gland

- uid: `J44OEqwwnP0U8PnJ0000`
- Page: /datasets/spatial-transcriptomics-prostate-gland-j44oeqwwnp0u8pnj0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 209
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9482614/
- Publication: https://doi.org/10.1038/s41467-022-33069-3
- Collections: [doi-10-1038-s41467-022-33069-3](/collections/md/a.md#doi-10-1038-s41467-022-33069-3)
- Load: `Catalog().dataset("J44OEqwwnP0U8PnJ0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-akusljft68junhx90000"></a>
## Mouse spinal cord

- uid: `AKUsLjft68jUnHx90000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-akusljft68junhx90000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 289
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("AKUsLjft68jUnHx90000").to_sdata()`


<a id="visium-spatial-gene-expression-prepuce-of-penis-nddj4n9igwbve91g0000"></a>
## Human prepuce of penis

- uid: `Nddj4n9IGwbVE91g0000`
- Page: /datasets/visium-spatial-gene-expression-prepuce-of-penis-nddj4n9igwbve91g0000/
- Technology: Visium
- Organism: human
- Tissue: prepuce of penis
- Modality: RNA
- Observations (spots): 659
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220572
- Publication: https://doi.org/10.1101/2023.01.04.522502
- Collections: [geo-gse220572](/collections/md/9.md#geo-gse220572)
- Load: `Catalog().dataset("Nddj4n9IGwbVE91g0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-auxvybegw09yodfq0000"></a>
## Human basal ganglion

- uid: `AuxVybEgw09YodFq0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-auxvybegw09yodfq0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 53,967
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("AuxVybEgw09YodFq0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-hpzouv6miwuaws5n0000"></a>
## Mouse brain

- uid: `hpzOuv6mIwUAWS5n0000`
- Page: /datasets/visium-spatial-gene-expression-brain-hpzouv6miwuaws5n0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,002
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE232910
- Publication: https://doi.org/10.1038/s41587-023-01937-y
- Collections: [geo-gse232910](/collections/md/0.md#geo-gse232910)
- Load: `Catalog().dataset("hpzOuv6mIwUAWS5n0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-snays2wnnv92vn2l0000"></a>
## Mouse intestine

- uid: `SnaYS2wNnv92vN2L0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-snays2wnnv92vn2l0000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 3,153
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
- Publication: https://doi.org/10.1038/s41586-024-08216-z
- Collections: [geo-gse245274](/collections/md/1.md#geo-gse245274)
- Load: `Catalog().dataset("SnaYS2wNnv92vN2L0000").to_sdata()`


<a id="visium-spatial-gene-expression-locus-ceruleus-q3akshhggawiimmj0000"></a>
## Human locus ceruleus

- uid: `Q3AKsHhgGAwiImMj0000`
- Page: /datasets/visium-spatial-gene-expression-locus-ceruleus-q3akshhggawiimmj0000/
- Technology: Visium
- Organism: human
- Tissue: locus ceruleus
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307866
- Publication: https://doi.org/10.1101/2025.10.29.685354
- Collections: [geo-gse307866](/collections/md/9.md#geo-gse307866)
- Load: `Catalog().dataset("Q3AKsHhgGAwiImMj0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-2qgjqqr6qkkkkwx50000"></a>
## Human dorsolateral prefrontal cortex

- uid: `2qgJQqr6qKkKKwx50000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-2qgjqqr6qkkkkwx50000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("2qgJQqr6qKkKKwx50000").to_sdata()`


<a id="10x-xenium-stylopod-8dnyglu54r8bdsal0000"></a>
## Ambystoma mexicanum stylopod

- uid: `8DnYgLU54R8BDsaL0000`
- Page: /datasets/10x-xenium-stylopod-8dnyglu54r8bdsal0000/
- Technology: 10x Xenium
- Organism: ambystoma mexicanum
- Tissue: stylopod
- Modality: RNA
- Observations (cells): 5,869
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294212
- Load: `Catalog().dataset("8DnYgLU54R8BDsaL0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-axnp86u9uikvtzam0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `Axnp86U9uikVTZAm0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-axnp86u9uikvtzam0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("Axnp86U9uikVTZAm0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-hrgo7wh54betxbqe0000"></a>
## Mouse brain

- uid: `hrgO7Wh54beTxBqe0000`
- Page: /datasets/visium-spatial-gene-expression-brain-hrgo7wh54betxbqe0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,563
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM4644084
- Collections: [geo-gse153424](/collections/md/c.md#geo-gse153424)
- Load: `Catalog().dataset("hrgO7Wh54beTxBqe0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-tnd6hi2egacgjgkn0000"></a>
## Mouse lung

- uid: `TND6hi2eGAcGJGkN0000`
- Page: /datasets/visium-spatial-gene-expression-lung-tnd6hi2egacgjgkn0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Modality: RNA
- Observations (spots): 2,120
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("TND6hi2eGAcGJGkN0000").to_sdata()`


<a id="visium-spatial-gene-expression-parathyroid-gland-6kfnys0jprn9zk7f0000"></a>
## Mouse parathyroid gland

- uid: `6kfNyS0JPRn9Zk7F0000`
- Page: /datasets/visium-spatial-gene-expression-parathyroid-gland-6kfnys0jprn9zk7f0000/
- Technology: Visium
- Organism: mouse
- Tissue: parathyroid gland
- Modality: RNA
- Observations (spots): 1,544
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9008654
- Collections: [geo-gse298115](/collections/md/5.md#geo-gse298115)
- Load: `Catalog().dataset("6kfNyS0JPRn9Zk7F0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-77wqbbj0goz4lt2n0000"></a>
## Mouse kidney

- uid: `77Wqbbj0goz4LT2n0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-77wqbbj0goz4lt2n0000/
- Technology: Visium
- Organism: mouse
- Tissue: kidney
- Condition: acute kidney failure
- Modality: RNA
- Observations (spots): 1,893
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5543481
- Collections: [geo-gse182939](/collections/md/d.md#geo-gse182939)
- Load: `Catalog().dataset("77Wqbbj0goz4LT2n0000").to_sdata()`


<a id="10x-xenium-brain-tlmg64y6hdqa4c7i0000"></a>
## Mouse brain

- uid: `TlmG64y6HDQa4c7i0000`
- Page: /datasets/10x-xenium-brain-tlmg64y6hdqa4c7i0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 201,587
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE348514
- Load: `Catalog().dataset("TlmG64y6HDQa4c7i0000").to_sdata()`


<a id="visium-spatial-gene-expression-mucosa-ja2vde6vrvx0ysx00000"></a>
## Human mucosa

- uid: `Ja2VdE6VrvX0ysx00000`
- Page: /datasets/visium-spatial-gene-expression-mucosa-ja2vde6vrvx0ysx00000/
- Technology: Visium
- Organism: human
- Tissue: mucosa
- Condition: head and neck squamous cell carcinoma
- Modality: RNA
- Observations (spots): 1,187
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE281978
- Publication: https://doi.org/10.1002/jmv.29386
- Collections: [geo-gse281978](/collections/md/9.md#geo-gse281978)
- Load: `Catalog().dataset("Ja2VdE6VrvX0ysx00000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-ylkyjdjslzsk42l50000"></a>
## Mouse liver

- uid: `YLkYjDjSLzsK42l50000`
- Page: /datasets/visium-spatial-gene-expression-liver-ylkyjdjslzsk42l50000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 2,736
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7116328
- Collections: [geo-gse228195](/collections/md/1.md#geo-gse228195)
- Load: `Catalog().dataset("YLkYjDjSLzsK42l50000").to_sdata()`


<a id="10x-xenium-skin-of-body-cca4l3od2izfyzlq0000"></a>
## Human skin of body

- uid: `CCA4l3OD2iZfYzlq0000`
- Page: /datasets/10x-xenium-skin-of-body-cca4l3od2izfyzlq0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: acne
- Modality: RNA
- Observations (cells): 19,271
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301280
- Load: `Catalog().dataset("CCA4l3OD2iZfYzlq0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-olnrrkbiahz6su5d0000"></a>
## Macaque basal ganglion

- uid: `olNrRKBiaHZ6sU5D0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-olnrrkbiahz6su5d0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 53,337
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("olNrRKBiaHZ6sU5D0000").to_sdata()`


<a id="merfish-brain-utnc9pql22hahgip0000"></a>
## Mouse brain

- uid: `utnC9PQL22hAhGiP0000`
- Page: /datasets/merfish-brain-utnc9pql22hahgip0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 27,215
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("utnC9PQL22hAhGiP0000").to_sdata()`


<a id="vizgen-merscope-brain-fo7zwdqfkx7prj3p0000"></a>
## Mouse brain

- uid: `FO7zwDQFKx7pRJ3p0000`
- Page: /datasets/vizgen-merscope-brain-fo7zwdqfkx7prj3p0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 87,352
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("FO7zwDQFKx7pRJ3p0000").to_sdata()`


<a id="mibi-tof-breast-tjghbtvbsvgzfare0000"></a>
## Human breast

- uid: `tJgHBtvbsVGzfARE0000`
- Page: /datasets/mibi-tof-breast-tjghbtvbsvgzfare0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,394
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("tJgHBtvbsVGzfARE0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-esd2rqqqlexa6ftq0000"></a>
## Human lymph node

- uid: `eSD2rQQqLEXA6fTq0000`
- Page: /datasets/phenocycler-fusion-lymph-node-esd2rqqqlexa6ftq0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 18,248
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("eSD2rQQqLEXA6fTq0000").to_sdata()`


<a id="10x-xenium-brain-lrj1crd6kijyenib0000"></a>
## Human brain

- uid: `lRj1crD6kiJyEnIb0000`
- Page: /datasets/10x-xenium-brain-lrj1crd6kijyenib0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (cells): 105,149
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260452
- Publication: https://doi.org/10.1038/s41586-026-10214-2
- Load: `Catalog().dataset("lRj1crD6kiJyEnIb0000").to_sdata()`


<a id="10x-xenium-lung-0qmt4mcuczgxe16u0000"></a>
## Human lung

- uid: `0qMt4mCUCzGXE16U0000`
- Page: /datasets/10x-xenium-lung-0qmt4mcuczgxe16u0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (cells): 86,009
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310162
- Load: `Catalog().dataset("0qMt4mCUCzGXE16U0000").to_sdata()`


<a id="vizgen-merscope-brain-thh8lyvmvoo6hxrr0000"></a>
## Mouse brain

- uid: `tHh8lYVMVOO6HxRr0000`
- Page: /datasets/vizgen-merscope-brain-thh8lyvmvoo6hxrr0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Condition: Down syndrome
- Modality: RNA
- Observations (cells): 678,514
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE280177
- Publication: https://doi.org/10.1038/s41467-025-63752-0
- Load: `Catalog().dataset("tHh8lYVMVOO6HxRr0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-u0jceii0ehfyxetd0000"></a>
## Human kidney

- uid: `U0jCEiI0EHFyxEtD0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-u0jceii0ehfyxetd0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 74,429
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-09-06_21h51m25s
- Load: `Catalog().dataset("U0jCEiI0EHFyxEtD0000").to_sdata()`