# SpatialData-DB datasets, shard 4d

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-mammary-gland-ya714sjhczddmzrp0000"></a>
## Mouse mammary gland

- uid: `Ya714sJHCzDdMZRp0000`
- Page: /datasets/visium-spatial-gene-expression-mammary-gland-ya714sjhczddmzrp0000/
- Technology: Visium
- Organism: mouse
- Tissue: mammary gland
- Condition: breast neoplasm
- Modality: RNA
- Observations (spots): 6,597
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216542
- Publication: https://doi.org/10.1038/s43587-024-00751-8
- Collections: [geo-gse216542](/collections/md/5.md#geo-gse216542)
- Load: `Catalog().dataset("Ya714sJHCzDdMZRp0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-rxmebkomieflmrk70000"></a>
## Mouse brain

- uid: `RXmEBKoMIeFLmrK70000`
- Page: /datasets/visium-spatial-gene-expression-brain-rxmebkomieflmrk70000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: traumatic brain injury
- Modality: RNA
- Observations (spots): 4,492
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319409
- Publication: https://doi.org/10.1186/s40478-025-02219-1
- Collections: [geo-gse319409](/collections/md/8.md#geo-gse319409)
- Load: `Catalog().dataset("RXmEBKoMIeFLmrK70000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-qcge4iapt3jyyamz0000"></a>
## Human colon

- uid: `qcge4iApT3jyYAmz0000`
- Page: /datasets/visium-spatial-gene-expression-colon-qcge4iapt3jyyamz0000/
- Technology: Visium
- Organism: human
- Tissue: colon
- Condition: colorectal carcinoma
- Modality: RNA
- Observations (spots): 4,898
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334323
- Collections: [geo-gse334323](/collections/md/a.md#geo-gse334323)
- Load: `Catalog().dataset("qcge4iApT3jyYAmz0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-vkrn8sz5kmamk0hm0000"></a>
## Human lung

- uid: `vKRN8SZ5kmAMK0Hm0000`
- Page: /datasets/visium-spatial-gene-expression-lung-vkrn8sz5kmamk0hm0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (spots): 2,524
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41588-022-01243-4
- Publication: https://doi.org/10.1038/s41588-022-01243-4
- Collections: [doi-10-1038-s41588-022-01243-4](/collections/md/9.md#doi-10-1038-s41588-022-01243-4)
- Load: `Catalog().dataset("vKRN8SZ5kmAMK0Hm0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-rtqo6bzbvnzidqie0000"></a>
## Mouse heart

- uid: `rTQo6BzbVNzidqie0000`
- Page: /datasets/visium-spatial-gene-expression-heart-rtqo6bzbvnzidqie0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Modality: RNA
- Observations (spots): 2,823
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source:                                             
- Collections: [hest-yap-drives-assembly-of-a-spatially-colocalized-cellular-triad-required-for-heart-renewal](/collections/md/a.md#hest-yap-drives-assembly-of-a-spatially-colocalized-cellular-triad-required-for-heart-renewal)
- Load: `Catalog().dataset("rTQo6BzbVNzidqie0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-dmzw6weybcy5nju70000"></a>
## Human brain

- uid: `dMzw6WEYBcY5Nju70000`
- Page: /datasets/visium-spatial-gene-expression-brain-dmzw6weybcy5nju70000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: brain glioma
- Modality: RNA
- Observations (spots): 2,439
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242352
- Publication: https://doi.org/10.1038/s41467-025-59805-z
- Collections: [geo-gse242352](/collections/md/d.md#geo-gse242352)
- Load: `Catalog().dataset("dMzw6WEYBcY5Nju70000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-87c2mjzc5fm10vn30000"></a>
## Mouse intestine

- uid: `87c2MjzC5fm10VN30000`
- Page: /datasets/visium-spatial-gene-expression-intestine-87c2mjzc5fm10vn30000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 3,616
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
- Publication: https://doi.org/10.1038/s41586-024-08216-z
- Collections: [geo-gse245274](/collections/md/1.md#geo-gse245274)
- Load: `Catalog().dataset("87c2MjzC5fm10VN30000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-9hmw8yakdeqz5vzc0000"></a>
## Mouse brain

- uid: `9HMW8YAkdEQz5vzC0000`
- Page: /datasets/visium-spatial-gene-expression-brain-9hmw8yakdeqz5vzc0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,874
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249403
- Publication: https://doi.org/10.1038/s41593-026-02420-y
- Collections: [geo-gse249403](/collections/md/9.md#geo-gse249403)
- Load: `Catalog().dataset("9HMW8YAkdEQz5vzC0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-m1mg7dltfehprqds0000"></a>
## Mouse brain

- uid: `M1MG7DLTfEhpRqds0000`
- Page: /datasets/visium-spatial-gene-expression-brain-m1mg7dltfehprqds0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,543
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285858
- Publication: https://doi.org/10.1016/j.neuron.2025.05.014
- Collections: [geo-gse285858](/collections/md/d.md#geo-gse285858)
- Load: `Catalog().dataset("M1MG7DLTfEhpRqds0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-jymw6dhljbefhd8j0000"></a>
## Mouse intestine

- uid: `jymW6dhlJbefhd8j0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-jymw6dhljbefhd8j0000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 2,924
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
- Publication: https://doi.org/10.1038/s41586-024-08216-z
- Collections: [geo-gse245274](/collections/md/1.md#geo-gse245274)
- Load: `Catalog().dataset("jymW6dhlJbefhd8j0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-ijeqrlfeoxgexv1l0000"></a>
## Mouse brain

- uid: `ijeQrlFeoXgEXV1L0000`
- Page: /datasets/visium-spatial-gene-expression-brain-ijeqrlfeoxgexv1l0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,735
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282203
- Publication: https://doi.org/10.64898/2026.01.26.701799
- Collections: [geo-gse282203](/collections/md/3.md#geo-gse282203)
- Load: `Catalog().dataset("ijeQrlFeoXgEXV1L0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-btdkmibgliuobbtc0000"></a>
## Human basal ganglion

- uid: `BtdKMiBglIuobbTc0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-btdkmibgliuobbtc0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 87,849
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Load: `Catalog().dataset("BtdKMiBglIuobbTc0000").to_sdata()`


<a id="visium-spatial-gene-expression-coronary-artery-jxikizyfg09gtuif0000"></a>
## Human coronary artery

- uid: `jxIkIzyfG09GTUif0000`
- Page: /datasets/visium-spatial-gene-expression-coronary-artery-jxikizyfg09gtuif0000/
- Technology: Visium
- Organism: human
- Tissue: coronary artery
- Modality: RNA
- Observations (spots): 4,779
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316390
- Collections: [geo-gse316390](/collections/md/b.md#geo-gse316390)
- Load: `Catalog().dataset("jxIkIzyfG09GTUif0000").to_sdata()`


<a id="10x-xenium-kidney-7spk0u7nsakjcybb0000"></a>
## Human kidney

- uid: `7Spk0u7nSAkJCybB0000`
- Page: /datasets/10x-xenium-kidney-7spk0u7nsakjcybb0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Modality: RNA
- Observations (cells): 317,414
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8933093
- Publication: https://doi.org/10.1038/s41467-025-59819-7
- Collections: [geo-gse294965](/collections/md/2.md#geo-gse294965)
- Load: `Catalog().dataset("7Spk0u7nSAkJCybB0000").to_sdata()`


<a id="visium-spatial-gene-expression-gastrocnemius-atbw83y2xgmmfryf0000"></a>
## Mouse gastrocnemius

- uid: `atBw83y2XgmMfRYF0000`
- Page: /datasets/visium-spatial-gene-expression-gastrocnemius-atbw83y2xgmmfryf0000/
- Technology: Visium
- Organism: mouse
- Tissue: gastrocnemius
- Condition: Duchenne muscular dystrophy
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297388
- Publication: https://doi.org/10.1186/s13395-026-00429-2
- Collections: [geo-gse297388](/collections/md/7.md#geo-gse297388)
- Load: `Catalog().dataset("atBw83y2XgmMfRYF0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-gdinatk9sdmws53t0000"></a>
## Mouse heart

- uid: `gDinatk9SDmWs53T0000`
- Page: /datasets/visium-spatial-gene-expression-heart-gdinatk9sdmws53t0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Modality: RNA
- Observations (spots): 1,228
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308859
- Publication: https://doi.org/10.3389/fimmu.2026.1701776
- Collections: [geo-gse308859](/collections/md/8.md#geo-gse308859)
- Load: `Catalog().dataset("gDinatk9SDmWs53T0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-kjexgscyy9litfqf0000"></a>
## Human kidney

- uid: `kJexGScyY9LitFQF0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-kjexgscyy9litfqf0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: lupus nephritis
- Modality: RNA
- Observations (spots): 830
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333529
- Publication: https://doi.org/10.1093/jimmun/vkag178
- Collections: [geo-gse333529](/collections/md/2.md#geo-gse333529)
- Load: `Catalog().dataset("kJexGScyY9LitFQF0000").to_sdata()`


<a id="10x-xenium-kidney-cybqvwqujhegvrrz0000"></a>
## Rat kidney

- uid: `CYBqvwquJHEGvRrZ0000`
- Page: /datasets/10x-xenium-kidney-cybqvwqujhegvrrz0000/
- Technology: 10x Xenium
- Organism: rat
- Tissue: kidney
- Condition: acute kidney failure
- Modality: RNA
- Observations (cells): 324,796
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE338104
- Publication: https://doi.org/10.1016/j.redox.2026.104293
- Load: `Catalog().dataset("CYBqvwquJHEGvRrZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-qsafwvdu4f0ntuyu0000"></a>
## Human skin of body

- uid: `QSaFwvDu4F0NtUYu0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-qsafwvdu4f0ntuyu0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: cutaneous leishmaniasis
- Modality: RNA
- Observations (spots): 258
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8804029
- Collections: [geo-gse290027](/collections/md/d.md#geo-gse290027)
- Load: `Catalog().dataset("QSaFwvDu4F0NtUYu0000").to_sdata()`


<a id="merfish-brain-fdsueg3bwsocmj5g0000"></a>
## Mouse brain

- uid: `fdsueg3BWsoCMJ5g0000`
- Page: /datasets/merfish-brain-fdsueg3bwsocmj5g0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 26,292
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("fdsueg3BWsoCMJ5g0000").to_sdata()`


<a id="10x-xenium-embryo-igw9ou1z6xn1ewgp0000"></a>
## Mouse embryo

- uid: `igw9oU1z6Xn1ewGP0000`
- Page: /datasets/10x-xenium-embryo-igw9ou1z6xn1ewgp0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: embryo
- Modality: RNA
- Observations (cells): 83,239
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310599
- Load: `Catalog().dataset("igw9oU1z6Xn1ewGP0000").to_sdata()`


<a id="mibi-tof-breast-rv1chqkym0fgu7je0000"></a>
## Human breast

- uid: `rv1chqKYM0Fgu7JE0000`
- Page: /datasets/mibi-tof-breast-rv1chqkym0fgu7je0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 7,449
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("rv1chqKYM0Fgu7JE0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-tqlvle40nqw2e0rl0000"></a>
## Human kidney

- uid: `tqlVLe40nQW2E0RL0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-tqlvle40nqw2e0rl0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 11,280
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2021-06-16_17h24m24s
- Load: `Catalog().dataset("tqlVLe40nQW2E0RL0000").to_sdata()`


<a id="10x-xenium-pancreas-7gdtgfprruiftndd0000"></a>
## Mouse pancreas

- uid: `7GDtGfpRRuiFTNDD0000`
- Page: /datasets/10x-xenium-pancreas-7gdtgfprruiftndd0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: pancreas
- Modality: RNA
- Observations (cells): 127,105
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE315243
- Publication: https://doi.org/10.1016/j.cell.2026.03.032
- Load: `Catalog().dataset("7GDtGfpRRuiFTNDD0000").to_sdata()`


<a id="10x-xenium-breast-xxj6on7qzg24r63n0000"></a>
## Human breast

- uid: `xXJ6On7qzg24r63n0000`
- Page: /datasets/10x-xenium-breast-xxj6on7qzg24r63n0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: breast
- Condition: breast cancer
- Modality: RNA
- Observations (cells): 48,553
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311609
- Publication: https://doi.org/10.1038/s41592-026-03089-8
- Load: `Catalog().dataset("xXJ6On7qzg24r63n0000").to_sdata()`


<a id="10x-xenium-small-intestine-lvdsqs6k1fqqmezl0000"></a>
## Human small intestine

- uid: `lvDSqs6K1fQqmeZl0000`
- Page: /datasets/10x-xenium-small-intestine-lvdsqs6k1fqqmezl0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: small intestine
- Modality: RNA
- Observations (cells): 141,177
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296331
- Publication: https://doi.org/10.1016/j.cell.2025.08.029
- Load: `Catalog().dataset("lvDSqs6K1fQqmeZl0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-k5ggytbirxnkhdeu0000"></a>
## Human lymph node

- uid: `K5ggYtbIRxNkhdeU0000`
- Page: /datasets/phenocycler-fusion-lymph-node-k5ggytbirxnkhdeu0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 13,001
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("K5ggYtbIRxNkhdeU0000").to_sdata()`