# SpatialData-DB datasets, shard 49

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-brain-kra4ovivfnktvm2v0000"></a>
## Mouse brain

- uid: `KRA4oVIVfNKtvM2V0000`
- Page: /datasets/visium-spatial-gene-expression-brain-kra4ovivfnktvm2v0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,696
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/mouse-brain-serial-section-1-sagittal-anterior-1-standard-1-0-0
- Load: `Catalog().dataset("KRA4oVIVfNKtvM2V0000").to_sdata()`


<a id="visium-spatial-gene-expression-thymus-4e7k8pw88ot48zus0000"></a>
## Mouse thymus

- uid: `4e7k8Pw88OT48ZuS0000`
- Page: /datasets/visium-spatial-gene-expression-thymus-4e7k8pw88ot48zus0000/
- Technology: Visium
- Organism: mouse
- Tissue: thymus
- Condition: asthma
- Modality: RNA
- Observations (spots): 2,897
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE227332
- Publication: https://doi.org/10.1126/sciimmunol.adi9066
- Collections: [geo-gse227332](/collections/md/f.md#geo-gse227332)
- Load: `Catalog().dataset("4e7k8Pw88OT48ZuS0000").to_sdata()`


<a id="visium-hd-bone-element-wsyy3ri9x0xgeb5u0000"></a>
## Human bone element

- uid: `WSYY3RI9x0Xgeb5U0000`
- Page: /datasets/visium-hd-bone-element-wsyy3ri9x0xgeb5u0000/
- Technology: Visium HD
- Organism: human
- Tissue: bone element
- Condition: Ewing sarcoma
- Modality: RNA
- Observations (bins): 94,034
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9556000
- Publication: https://doi.org/10.1038/s41591-026-04340-7
- Collections: [geo-gse322640](/collections/md/a.md#geo-gse322640)
- Load: `Catalog().dataset("WSYY3RI9x0Xgeb5U0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-2ht0q0manszhyegs0000"></a>
## Mouse spinal cord

- uid: `2HT0Q0manSzHyegs0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-2ht0q0manszhyegs0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 311
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("2HT0Q0manSzHyegs0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-r8jsxckfxlgmpzzl0000"></a>
## Human intestine

- uid: `R8jsxcKFxLGMpzzL0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-r8jsxckfxlgmpzzl0000/
- Technology: Visium
- Organism: human
- Tissue: intestine
- Condition: colon adenocarcinoma
- Modality: RNA
- Observations (spots): 2,708
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.cell.com/cell/fulltext/S0092-8674(23)01222-9?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867423012229%3Fshowall%3Dtrue#secsectitle0020
- Publication: https://doi.org/10.1016/j.cell.2023.11.006
- Collections: [doi-10-1016-j-cell-2023-11-006](/collections/md/1.md#doi-10-1016-j-cell-2023-11-006)
- Load: `Catalog().dataset("R8jsxcKFxLGMpzzL0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-ondtzalw2hfhkztz0000"></a>
## Mouse spinal cord

- uid: `oNdtZalW2hFHKZTz0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-ondtzalw2hfhkztz0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 242
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("oNdtZalW2hFHKZTz0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-baazaqvwdwffxvch0000"></a>
## Human kidney

- uid: `BAazAqVwDWfFxVcH0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-baazaqvwdwffxvch0000/
- Technology: Visium
- Organism: human
- Tissue: kidney
- Condition: pauci-immune glomerulonephritis with ANCA
- Modality: RNA
- Observations (spots): 719
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250138
- Publication: https://doi.org/10.1038/s41467-024-52525-w
- Collections: [geo-gse250138](/collections/md/e.md#geo-gse250138)
- Load: `Catalog().dataset("BAazAqVwDWfFxVcH0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-6rhc4ny41aq3lfvc0000"></a>
## Mouse skin of body

- uid: `6RhC4Ny41aQ3lFvC0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-6rhc4ny41aq3lfvc0000/
- Technology: Visium
- Organism: mouse
- Tissue: skin of body
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245582
- Publication: https://doi.org/10.1158/0008-5472.CAN-24-0690
- Collections: [geo-gse245582](/collections/md/8.md#geo-gse245582)
- Load: `Catalog().dataset("6RhC4Ny41aQ3lFvC0000").to_sdata()`


<a id="visium-spatial-gene-expression-entorhinal-cortex-gikpnse2bkywljs60000"></a>
## Human entorhinal cortex

- uid: `gIKPnse2BkyWLJs60000`
- Page: /datasets/visium-spatial-gene-expression-entorhinal-cortex-gikpnse2bkywljs60000/
- Technology: Visium
- Organism: human
- Tissue: entorhinal cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307990
- Publication: https://doi.org/10.1101/2025.11.20.689483
- Collections: [geo-gse307990](/collections/md/6.md#geo-gse307990)
- Load: `Catalog().dataset("gIKPnse2BkyWLJs60000").to_sdata()`


<a id="visium-spatial-gene-expression-coronary-artery-x3nqruldbzihmqqk0000"></a>
## Human coronary artery

- uid: `X3NqRuLDBzihmQQk0000`
- Page: /datasets/visium-spatial-gene-expression-coronary-artery-x3nqruldbzihmqqk0000/
- Technology: Visium
- Organism: human
- Tissue: coronary artery
- Condition: atherosclerosis
- Modality: RNA
- Observations (spots): 1,058
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE314851
- Publication: https://doi.org/10.1126/science.adx1736
- Collections: [geo-gse314851](/collections/md/d.md#geo-gse314851)
- Load: `Catalog().dataset("X3NqRuLDBzihmQQk0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-xxie1j6w0yhuahex0000"></a>
## Human lung

- uid: `XXie1j6W0YhuAhEX0000`
- Page: /datasets/visium-spatial-gene-expression-lung-xxie1j6w0yhuahex0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: sarcoidosis
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607
- Collections: [geo-gse288607](/collections/md/6.md#geo-gse288607)
- Load: `Catalog().dataset("XXie1j6W0YhuAhEX0000").to_sdata()`


<a id="visium-spatial-gene-expression-white-matter-ukfhbmzug3x5goon0000"></a>
## Human white matter

- uid: `ukfHBmZUG3x5GOoN0000`
- Page: /datasets/visium-spatial-gene-expression-white-matter-ukfhbmzug3x5goon0000/
- Technology: Visium
- Organism: human
- Tissue: white matter
- Condition: multiple sclerosis
- Modality: RNA
- Observations (spots): 3,649
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6368805
- Collections: [geo-gse208747](/collections/md/d.md#geo-gse208747)
- Load: `Catalog().dataset("ukfHBmZUG3x5GOoN0000").to_sdata()`


<a id="visium-spatial-gene-expression-bile-duct-j2zo74gzka9p0gqt0001"></a>
## Human bile duct

- uid: `J2Zo74gZkA9p0GQT0001`
- Page: /datasets/visium-spatial-gene-expression-bile-duct-j2zo74gzka9p0gqt0001/
- Technology: Visium
- Organism: human
- Tissue: bile duct
- Condition: cholangiocarcinoma
- Modality: RNA
- Observations (spots): 536
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316402
- Collections: [geo-gse316402](/collections/md/6.md#geo-gse316402)
- Load: `Catalog().dataset("J2Zo74gZkA9p0GQT0001").to_sdata()`


<a id="visium-spatial-gene-expression-liver-dp3shzrrtq2aab9h0000"></a>
## Mouse liver

- uid: `Dp3sHzRRTQ2AaB9H0000`
- Page: /datasets/visium-spatial-gene-expression-liver-dp3shzrrtq2aab9h0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: hepatoblastoma
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7016926
- Collections: [geo-gse195575](/collections/md/d.md#geo-gse195575)
- Load: `Catalog().dataset("Dp3sHzRRTQ2AaB9H0000").to_sdata()`


<a id="10x-xenium-heart-gyhuykbnhdegdebq0000"></a>
## Human heart

- uid: `gYHuYKBnHdEGdEBQ0000`
- Page: /datasets/10x-xenium-heart-gyhuykbnhdegdebq0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: heart
- Condition: heart failure
- Modality: RNA
- Observations (cells): 26,990
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310386
- Load: `Catalog().dataset("gYHuYKBnHdEGdEBQ0000").to_sdata()`


<a id="visium-spatial-gene-expression-peritoneum-dhrd4d1aolsilxzj0000"></a>
## Human peritoneum

- uid: `DhRd4d1AOLsiLxZJ0000`
- Page: /datasets/visium-spatial-gene-expression-peritoneum-dhrd4d1aolsilxzj0000/
- Technology: Visium
- Organism: human
- Tissue: peritoneum
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,260
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8452865
- Collections: [geo-gse274557](/collections/md/1.md#geo-gse274557)
- Load: `Catalog().dataset("DhRd4d1AOLsiLxZJ0000").to_sdata()`


<a id="merfish-brain-lrjavfnq5c1xlz4h0000"></a>
## Mouse brain

- uid: `LrJAvfnq5c1xlZ4H0000`
- Page: /datasets/merfish-brain-lrjavfnq5c1xlz4h0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 14,691
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-2.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-2](/collections/md/1.md#abc-zhuang-abca-2)
- Load: `Catalog().dataset("LrJAvfnq5c1xlZ4H0000").to_sdata()`


<a id="mibi-tof-breast-r3gonkofwxb7nrk00000"></a>
## Human breast

- uid: `r3GOnkOfWxB7nrK00000`
- Page: /datasets/mibi-tof-breast-r3gonkofwxb7nrk00000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 7,508
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("r3GOnkOfWxB7nrK00000").to_sdata()`


<a id="mibi-tof-brain-1l1gao2lmkuswz1b0000"></a>
## Human brain

- uid: `1l1gao2LMKUsWz1B0000`
- Page: /datasets/mibi-tof-brain-1l1gao2lmkuswz1b0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: brain
- Condition: glioma
- Modality: protein
- Observations: 436
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1579
- Collections: [bia-s-biad1579](/collections/md/2.md#bia-s-biad1579)
- Load: `Catalog().dataset("1l1gao2LMKUsWz1B0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-cu5zemqgncbajjbl0000"></a>
## Human kidney

- uid: `Cu5ZeMqGNcBAjjBL0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-cu5zemqgncbajjbl0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 11,097
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-08-03_01h52m13s
- Load: `Catalog().dataset("Cu5ZeMqGNcBAjjBL0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-5jxlxfloqgjxbgmm0000"></a>
## Human lymph node

- uid: `5JxlxFlOqgJxbgmm0000`
- Page: /datasets/phenocycler-fusion-lymph-node-5jxlxfloqgjxbgmm0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: primary mediastinal large B-cell lymphoma
- Modality: protein
- Observations (cells): 8,365
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("5JxlxFlOqgJxbgmm0000").to_sdata()`


<a id="mibi-tof-breast-84tyl0dbratp5pp90000"></a>
## Human breast

- uid: `84Tyl0dBRAtp5pP90000`
- Page: /datasets/mibi-tof-breast-84tyl0dbratp5pp90000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,855
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("84Tyl0dBRAtp5pP90000").to_sdata()`


<a id="10x-xenium-lung-hrtmsbgoth6h8bkq0000"></a>
## Human lung

- uid: `hrtmsBGOTH6H8bKq0000`
- Page: /datasets/10x-xenium-lung-hrtmsbgoth6h8bkq0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (cells): 143,969
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310162
- Load: `Catalog().dataset("hrtmsBGOTH6H8bKq0000").to_sdata()`


<a id="10x-xenium-sigmoid-colon-6899lmawn9z5p1og0000"></a>
## Human sigmoid colon

- uid: `6899LMawN9z5p1oG0000`
- Page: /datasets/10x-xenium-sigmoid-colon-6899lmawn9z5p1og0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: sigmoid colon
- Condition: ulcerative colitis
- Modality: RNA
- Observations (cells): 43,984
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330953
- Publication: https://doi.org/10.1126/science.aeh7112
- Load: `Catalog().dataset("6899LMawN9z5p1oG0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-h9evnaagjvgkolzf0000"></a>
## Mouse liver

- uid: `h9eVNaAGjVGKolZf0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-h9evnaagjvgkolzf0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-03-28_11h51m48s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("h9eVNaAGjVGKolZf0000").to_sdata()`


<a id="mibi-tof-breast-cteiug8yy1kzrqeu0000"></a>
## Human breast

- uid: `cTeIug8yy1KZrQeU0000`
- Page: /datasets/mibi-tof-breast-cteiug8yy1kzrqeu0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,357
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("cTeIug8yy1KZrQeU0000").to_sdata()`