# SpatialData-DB datasets, shard 40

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-hd-intestine-zqtt3gyiaou4u6id0000"></a>
## Mouse intestine

- uid: `zQTt3GYIaOu4U6Id0000`
- Page: /datasets/visium-hd-intestine-zqtt3gyiaou4u6id0000/
- Technology: Visium HD
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (bins): 351,817
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-libraries-of-mouse-intestine
- Load: `Catalog().dataset("zQTt3GYIaOu4U6Id0000").to_sdata()`


<a id="10x-xenium-brain-j7ha1in4edicdpdv0000"></a>
## Mouse brain

- uid: `J7HA1IN4EdICdpDv0000`
- Page: /datasets/10x-xenium-brain-j7ha1in4edicdpdv0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 154,654
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/fresh-frozen-mouse-brain-replicates-1-standard
- Load: `Catalog().dataset("J7HA1IN4EdICdpDv0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-1eqdw2uoitdfbbsv0000"></a>
## Rat colon

- uid: `1EqDW2uoITdfbbsV0000`
- Page: /datasets/visium-spatial-gene-expression-colon-1eqdw2uoitdfbbsv0000/
- Technology: Visium
- Organism: rat
- Tissue: colon
- Condition: adenocarcinoma
- Modality: RNA
- Observations (spots): 1,276
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211895
- Publication: https://doi.org/10.1016/j.crmeth.2022.100340
- Collections: [geo-gse211895](/collections/md/d.md#geo-gse211895)
- Load: `Catalog().dataset("1EqDW2uoITdfbbsV0000").to_sdata()`


<a id="visium-spatial-gene-expression-bone-tissue-fgoqjnuef1ictvfa0000"></a>
## Human bone tissue

- uid: `fgOQJNUeF1icTvfA0000`
- Page: /datasets/visium-spatial-gene-expression-bone-tissue-fgoqjnuef1ictvfa0000/
- Technology: Visium
- Organism: human
- Tissue: bone tissue
- Condition: estrogen-receptor positive breast cancer
- Modality: RNA
- Observations (spots): 483
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298286
- Publication: https://doi.org/10.1158/0008-5472.CAN-25-3161
- Collections: [geo-gse298286](/collections/md/0.md#geo-gse298286)
- Load: `Catalog().dataset("fgOQJNUeF1icTvfA0000").to_sdata()`


<a id="spatial-transcriptomics-brain-zczzxu1vxuo5dclz0000"></a>
## Mouse brain

- uid: `zczzxu1vxuO5dClZ0000`
- Page: /datasets/spatial-transcriptomics-brain-zczzxu1vxuo5dclz0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 450
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("zczzxu1vxuO5dClZ0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-z8k78yki0waqqgbe0000"></a>
## Mouse spinal cord

- uid: `z8K78yKi0WAqQgBE0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-z8k78yki0waqqgbe0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 247
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("z8K78yKi0WAqQgBE0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-afivo2p0ckcnpnhz0000"></a>
## Human skin of body

- uid: `AFivO2p0ckCNpNhZ0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-afivo2p0ckcnpnhz0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: atopic eczema
- Modality: RNA
- Observations (spots): 768
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("AFivO2p0ckCNpNhZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-ykcsfkxaqxmzeta00000"></a>
## Human breast

- uid: `yKCsfKxaqxmzEta00000`
- Page: /datasets/visium-spatial-gene-expression-breast-ykcsfkxaqxmzeta00000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 1,055
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE213688
- Publication: https://doi.org/10.1016/j.labinv.2023.100258
- Collections: [geo-gse213688](/collections/md/5.md#geo-gse213688)
- Load: `Catalog().dataset("yKCsfKxaqxmzEta00000").to_sdata()`


<a id="visium-spatial-gene-expression-uterus-g2fpaigejaupydig0001"></a>
## Mouse uterus

- uid: `g2FPaiGEJaUpYDiG0001`
- Page: /datasets/visium-spatial-gene-expression-uterus-g2fpaigejaupydig0001/
- Technology: Visium
- Organism: mouse
- Tissue: uterus
- Modality: RNA
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/37598997/
- Publication: https://doi.org/10.1016/j.ajog.2023.08.012
- Collections: [doi-10-1016-j-ajog-2023-08-012](/collections/md/6.md#doi-10-1016-j-ajog-2023-08-012)
- Load: `Catalog().dataset("g2FPaiGEJaUpYDiG0001").to_sdata()`


<a id="visium-spatial-gene-expression-brain-ydip1vfz851fo9fe0000"></a>
## Mouse brain

- uid: `yDIP1vFZ851fo9FE0000`
- Page: /datasets/visium-spatial-gene-expression-brain-ydip1vfz851fo9fe0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,647
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203424
- Publication: https://doi.org/10.1002/alz.12821
- Collections: [geo-gse203424](/collections/md/7.md#geo-gse203424)
- Load: `Catalog().dataset("yDIP1vFZ851fo9FE0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-wcgnzpktudjnn8gv0000"></a>
## Mouse brain

- uid: `WcGNZpKtuDjNn8gv0000`
- Page: /datasets/visium-spatial-gene-expression-brain-wcgnzpktudjnn8gv0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,508
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249403
- Publication: https://doi.org/10.1038/s41593-026-02420-y
- Collections: [geo-gse249403](/collections/md/9.md#geo-gse249403)
- Load: `Catalog().dataset("WcGNZpKtuDjNn8gv0000").to_sdata()`


<a id="10x-xenium-uterus-ld89cvxwenpq2whu0000"></a>
## Mouse uterus

- uid: `lD89CVXWenpQ2Whu0000`
- Page: /datasets/10x-xenium-uterus-ld89cvxwenpq2whu0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: uterus
- Modality: RNA
- Observations (cells): 541,215
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9457937
- Publication: https://doi.org/10.1073/pnas.2600524123
- Collections: [geo-gse316662](/collections/md/f.md#geo-gse316662)
- Load: `Catalog().dataset("lD89CVXWenpQ2Whu0000").to_sdata()`


<a id="visium-spatial-gene-expression-locus-ceruleus-qpivsnaojis8wvg10000"></a>
## Human locus ceruleus

- uid: `qpivsnaOjIs8wVg10000`
- Page: /datasets/visium-spatial-gene-expression-locus-ceruleus-qpivsnaojis8wvg10000/
- Technology: Visium
- Organism: human
- Tissue: locus ceruleus
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307866
- Publication: https://doi.org/10.1101/2025.10.29.685354
- Collections: [geo-gse307866](/collections/md/9.md#geo-gse307866)
- Load: `Catalog().dataset("qpivsnaOjIs8wVg10000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-tzzwage81uejppiy0000"></a>
## Human pancreas

- uid: `TzzwaGe81uEJpPIy0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-tzzwage81uejppiy0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,508
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("TzzwaGe81uEJpPIy0000").to_sdata()`


<a id="visium-spatial-gene-expression-entorhinal-cortex-82vpcz9mdveiopks0000"></a>
## Human entorhinal cortex

- uid: `82VpcZ9mdVeIOpKs0000`
- Page: /datasets/visium-spatial-gene-expression-entorhinal-cortex-82vpcz9mdveiopks0000/
- Technology: Visium
- Organism: human
- Tissue: entorhinal cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307990
- Publication: https://doi.org/10.1101/2025.11.20.689483
- Collections: [geo-gse307990](/collections/md/6.md#geo-gse307990)
- Load: `Catalog().dataset("82VpcZ9mdVeIOpKs0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-hvr2exfs9ivl4x1u0000"></a>
## Mouse brain

- uid: `HVr2ExfS9iVL4x1u0000`
- Page: /datasets/visium-spatial-gene-expression-brain-hvr2exfs9ivl4x1u0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: breast cancer
- Modality: RNA
- Observations (spots): 4,017
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325996
- Publication: https://doi.org/10.1158/2767-9764.CRC-25-0639
- Collections: [geo-gse325996](/collections/md/0.md#geo-gse325996)
- Load: `Catalog().dataset("HVr2ExfS9iVL4x1u0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-olc8cjvlkgy8vydw0000"></a>
## Mouse brain

- uid: `oLC8cjvLKgy8vYDw0000`
- Page: /datasets/visium-spatial-gene-expression-brain-olc8cjvlkgy8vydw0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,020
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("oLC8cjvLKgy8vYDw0000").to_sdata()`


<a id="visium-spatial-gene-expression-bile-duct-lhf9hw3o0mumh6j40001"></a>
## Human bile duct

- uid: `lHf9Hw3o0MUMH6j40001`
- Page: /datasets/visium-spatial-gene-expression-bile-duct-lhf9hw3o0mumh6j40001/
- Technology: Visium
- Organism: human
- Tissue: bile duct
- Condition: cholangiocarcinoma
- Modality: RNA
- Observations (spots): 143
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316402
- Collections: [geo-gse316402](/collections/md/6.md#geo-gse316402)
- Load: `Catalog().dataset("lHf9Hw3o0MUMH6j40001").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-lvcms8buwylvjwfk0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `LVCms8BuWyLVJwfk0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-lvcms8buwylvjwfk0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: schizophrenia
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307403
- Collections: [geo-gse307403](/collections/md/0.md#geo-gse307403)
- Load: `Catalog().dataset("LVCms8BuWyLVJwfk0000").to_sdata()`


<a id="visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-6bx5whjxdkdxhd5g0000"></a>
## Human synovial membrane of synovial joint

- uid: `6bX5whJXdKDxhd5g0000`
- Page: /datasets/visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-6bx5whjxdkdxhd5g0000/
- Technology: Visium
- Organism: human
- Tissue: synovial membrane of synovial joint
- Modality: RNA
- Observations (spots): 1,295
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347797
- Collections: [geo-gse347797](/collections/md/b.md#geo-gse347797)
- Load: `Catalog().dataset("6bX5whJXdKDxhd5g0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-cdtz7xk7azgqtuq00000"></a>
## Mouse brain

- uid: `cDtz7Xk7AZgQtUQ00000`
- Page: /datasets/visium-spatial-gene-expression-brain-cdtz7xk7azgqtuq00000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,993
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("cDtz7Xk7AZgQtUQ00000").to_sdata()`


<a id="merfish-brain-ebwnrlwrttqv1hms0000"></a>
## Mouse brain

- uid: `eBWNrlWrtTQV1Hms0000`
- Page: /datasets/merfish-brain-ebwnrlwrttqv1hms0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 19,809
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("eBWNrlWrtTQV1Hms0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-lyujietvempsb4d10000"></a>
## Mouse liver

- uid: `lyuJIETVeMPsB4d10000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-lyujietvempsb4d10000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-04-11_10h23m28s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("lyuJIETVeMPsB4d10000").to_sdata()`


<a id="merfish-brain-jozwchywwu7efqjd0000"></a>
## Mouse brain

- uid: `joZwcHYwWu7EfQjd0000`
- Page: /datasets/merfish-brain-jozwchywwu7efqjd0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 21,107
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("joZwcHYwWu7EfQjd0000").to_sdata()`


<a id="mibi-tof-breast-kih5cmzobm4heye60000"></a>
## Human breast

- uid: `Kih5cmzoBM4heYe60000`
- Page: /datasets/mibi-tof-breast-kih5cmzobm4heye60000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,580
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("Kih5cmzoBM4heYe60000").to_sdata()`


<a id="mibi-tof-breast-1rwfokao9vyvdoqu0000"></a>
## Human breast

- uid: `1rWfoKao9vYvdoQu0000`
- Page: /datasets/mibi-tof-breast-1rwfokao9vyvdoqu0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 740
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("1rWfoKao9vYvdoQu0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-hnhvasojblwqpuae0000"></a>
## Mouse liver

- uid: `hNHvasOJblwQpUaE0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-hnhvasojblwqpuae0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-04-16_08h18m25s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("hNHvasOJblwQpUaE0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-zrjbefrndmrusqly0000"></a>
## Human kidney

- uid: `zrjBEfrNDmRusqLy0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-zrjbefrndmrusqly0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 21,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2021-11-30_17h43m09s
- Load: `Catalog().dataset("zrjBEfrNDmRusqLy0000").to_sdata()`


<a id="10x-xenium-sigmoid-colon-szjgwgzlv0yvgdwb0000"></a>
## Human sigmoid colon

- uid: `SZjGWGzLv0YvGdwb0000`
- Page: /datasets/10x-xenium-sigmoid-colon-szjgwgzlv0yvgdwb0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: sigmoid colon
- Condition: ulcerative colitis
- Modality: RNA
- Observations (cells): 16,181
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330953
- Publication: https://doi.org/10.1126/science.aeh7112
- Load: `Catalog().dataset("SZjGWGzLv0YvGdwb0000").to_sdata()`


<a id="10x-xenium-dentate-gyrus-of-hippocampal-formation-rlzsfcefcu2bywqz0000"></a>
## Human dentate gyrus of hippocampal formation

- uid: `rlzSfCeFcu2BywqZ0000`
- Page: /datasets/10x-xenium-dentate-gyrus-of-hippocampal-formation-rlzsfcefcu2bywqz0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: dentate gyrus of hippocampal formation
- Modality: RNA
- Observations (cells): 129,304
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE317381
- Load: `Catalog().dataset("rlzSfCeFcu2BywqZ0000").to_sdata()`


<a id="10x-xenium-lung-fvplzldbxfk5knmt0000"></a>
## Mouse lung

- uid: `fvPLzldBXFk5KNmt0000`
- Page: /datasets/10x-xenium-lung-fvplzldbxfk5knmt0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lung
- Condition: pulmonary fibrosis
- Modality: RNA
- Observations (cells): 202,932
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325253
- Publication: https://doi.org/10.1126/scitranslmed.ads2673
- Load: `Catalog().dataset("fvPLzldBXFk5KNmt0000").to_sdata()`