# SpatialData-DB datasets, shard 3a

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-ovary-cmp4e4nfkmwds59w0000"></a>
## Human ovary

- uid: `cmp4e4nFkMWds59W0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-cmp4e4nfkmwds59w0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: Endometrial Adenocarcinoma
- Modality: RNA
- Observations (spots): 3,493
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/human-ovarian-cancer-targeted-immunology-panel-stains-dapi-anti-pan-ck-anti-cd-45-1-standard-1-2-0
- Load: `Catalog().dataset("cmp4e4nFkMWds59W0000").to_sdata()`


<a id="spatial-transcriptomics-brain-esdwehni0funoxvf0000"></a>
## Mouse brain

- uid: `esdwEhnI0fUnoxVf0000`
- Page: /datasets/spatial-transcriptomics-brain-esdwehni0funoxvf0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 428
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("esdwEhnI0fUnoxVf0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-trvigoxjlwyxvh2s0000"></a>
## Mouse spinal cord

- uid: `trVigoxjLwYXVh2s0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-trvigoxjlwyxvh2s0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 138
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("trVigoxjLwYXVh2s0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-qcfjejkk8c9fzdxg0000"></a>
## Mouse spinal cord

- uid: `QCFJEJKK8C9FZDXG0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-qcfjejkk8c9fzdxg0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 326
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("QCFJEJKK8C9FZDXG0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-7cwew693v6d7n40x0000"></a>
## Mouse spinal cord

- uid: `7Cwew693v6D7n40X0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-7cwew693v6d7n40x0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 234
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("7Cwew693v6D7n40X0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-rbl1hjjmk76hlzpc0000"></a>
## Human lung

- uid: `rBl1hJjmk76hLZpc0000`
- Page: /datasets/visium-spatial-gene-expression-lung-rbl1hjjmk76hlzpc0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (spots): 2,462
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-36071-5
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [doi-10-1038-s41467-023-36071-5](/collections/md/9.md#doi-10-1038-s41467-023-36071-5)
- Load: `Catalog().dataset("rBl1hJjmk76hLZpc0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-lrjsfvy6wlx8muhw0000"></a>
## Human skin of body

- uid: `lrjSfVY6wlx8muHW0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-lrjsfvy6wlx8muhw0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: lichen planus
- Modality: RNA
- Observations (spots): 706
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("lrjSfVY6wlx8muHW0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-gpqpn2hml6lxvukd0000"></a>
## Human brain

- uid: `GpQPN2HmL6lXvukd0000`
- Page: /datasets/visium-spatial-gene-expression-brain-gpqpn2hml6lxvukd0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,592
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41593-020-00787-0#data-availability
- Publication: https://doi.org/10.1038/s41593-020-00787-0
- Collections: [doi-10-1038-s41593-020-00787-0](/collections/md/3.md#doi-10-1038-s41593-020-00787-0)
- Load: `Catalog().dataset("GpQPN2HmL6lXvukd0000").to_sdata()`


<a id="10x-xenium-zone-of-skin-7skwmohcm6kgalax0000"></a>
## Human zone of skin

- uid: `7sKWMoHCM6kGAlax0000`
- Page: /datasets/10x-xenium-zone-of-skin-7skwmohcm6kgalax0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: zone of skin
- Condition: systemic sclerosis
- Modality: RNA
- Observations (cells): 6,953
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9357158
- Publication: https://doi.org/10.1172/jci.insight.198954
- Collections: [geo-gse312932](/collections/md/3.md#geo-gse312932)
- Load: `Catalog().dataset("7sKWMoHCM6kGAlax0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-56npfwqcvjivh4qg0000"></a>
## Human brain

- uid: `56NpfwQcVjIvH4qg0000`
- Page: /datasets/visium-spatial-gene-expression-brain-56npfwqcvjivh4qg0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 1,555
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235672
- Publication: https://doi.org/10.1038/s43018-023-00598-9
- Collections: [geo-gse235672](/collections/md/b.md#geo-gse235672)
- Load: `Catalog().dataset("56NpfwQcVjIvH4qg0000").to_sdata()`


<a id="visium-spatial-gene-expression-ilium-abwq7ualtmvwgzqm0000"></a>
## Human ilium

- uid: `ABwQ7UALTmvwgZQm0000`
- Page: /datasets/visium-spatial-gene-expression-ilium-abwq7ualtmvwgzqm0000/
- Technology: Visium
- Organism: human
- Tissue: ilium
- Modality: RNA
- Observations (spots): 2,264
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE281317
- Publication: https://doi.org/10.1038/s41586-025-09399-9
- Collections: [geo-gse281317](/collections/md/6.md#geo-gse281317)
- Load: `Catalog().dataset("ABwQ7UALTmvwgZQm0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-smnkakvbpqcrwkf30000"></a>
## Mouse intestine

- uid: `sMNkAKvBPqCRwkf30000`
- Page: /datasets/visium-spatial-gene-expression-intestine-smnkakvbpqcrwkf30000/
- Technology: Visium
- Organism: mouse
- Tissue: intestine
- Modality: RNA
- Observations (spots): 2,625
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245274
- Publication: https://doi.org/10.1038/s41586-024-08216-z
- Collections: [geo-gse245274](/collections/md/1.md#geo-gse245274)
- Load: `Catalog().dataset("sMNkAKvBPqCRwkf30000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-luffp3tugj7mo4xz0000"></a>
## Human basal ganglion

- uid: `lUFFP3tUGj7MO4XZ0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-luffp3tugj7mo4xz0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 99,507
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("lUFFP3tUGj7MO4XZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-onsrxx13x1kefb5j0000"></a>
## Human ovary

- uid: `ONsrXX13X1keFb5j0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-onsrxx13x1kefb5j0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian squamous cell carcinoma
- Modality: RNA
- Observations (spots): 2,597
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272833
- Publication: https://doi.org/10.1111/cas.70022
- Collections: [geo-gse272833](/collections/md/4.md#geo-gse272833)
- Load: `Catalog().dataset("ONsrXX13X1keFb5j0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-7oymoqaji756bue40000"></a>
## Human pancreas

- uid: `7OyMoQaJI756BUE40000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-7oymoqaji756bue40000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 3,923
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("7OyMoQaJI756BUE40000").to_sdata()`


<a id="10x-xenium-bone-marrow-aisiyheynuvzldd10001"></a>
## Human bone marrow

- uid: `aISiYhEynUVzlDd10001`
- Page: /datasets/10x-xenium-bone-marrow-aisiyheynuvzldd10001/
- Technology: 10x Xenium
- Organism: human
- Tissue: bone marrow
- Condition: acute lymphoblastic leukemia
- Modality: RNA
- Observations (cells): 225,906
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard
- Collections: [10x-human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard](/collections/md/f.md#10x-human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard)
- Load: `Catalog().dataset("aISiYhEynUVzlDd10001").to_sdata()`


<a id="10x-xenium-rectum-z9zpagpdnm4cj9qz0000"></a>
## Human rectum

- uid: `Z9zPaGpdnm4cJ9qZ0000`
- Page: /datasets/10x-xenium-rectum-z9zpagpdnm4cj9qz0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: rectum
- Condition: Crohn disease
- Modality: RNA
- Observations (cells): 33,863
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312420
- Publication: https://doi.org/10.1038/s41467-026-72482-w
- Load: `Catalog().dataset("Z9zPaGpdnm4cJ9qZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-ckuvsuoehq9oajqa0000"></a>
## Mouse brain

- uid: `cKuvsUoeHQ9OAjqA0000`
- Page: /datasets/visium-spatial-gene-expression-brain-ckuvsuoehq9oajqa0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,808
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8604634
- Collections: [geo-gse280709](/collections/md/8.md#geo-gse280709)
- Load: `Catalog().dataset("cKuvsUoeHQ9OAjqA0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-pftgwzabmnymmqre0000"></a>
## Macaque basal ganglion

- uid: `pfTgWzabmnYMMqre0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-pftgwzabmnymmqre0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 28,056
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("pfTgWzabmnYMMqre0000").to_sdata()`


<a id="vizgen-merscope-brain-cscbaijvvcctf2ox0000"></a>
## Mouse brain

- uid: `CSCBAIJVVcctF2OX0000`
- Page: /datasets/vizgen-merscope-brain-cscbaijvvcctf2ox0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 362,238
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269617
- Load: `Catalog().dataset("CSCBAIJVVcctF2OX0000").to_sdata()`


<a id="mibi-tof-breast-pavfcuivbsut9evs0000"></a>
## Human breast

- uid: `PavFCUIVbsuT9EvS0000`
- Page: /datasets/mibi-tof-breast-pavfcuivbsut9evs0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,565
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("PavFCUIVbsuT9EvS0000").to_sdata()`


<a id="mibi-tof-lymph-node-srupsl2dr9t5hh0t0000"></a>
## Human lymph node

- uid: `SrUpSL2Dr9t5hH0t0000`
- Page: /datasets/mibi-tof-lymph-node-srupsl2dr9t5hh0t0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,955
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("SrUpSL2Dr9t5hH0t0000").to_sdata()`


<a id="mibi-tof-breast-b8acipvwv5xvmltt0000"></a>
## Human breast

- uid: `b8ACipVwv5xvmltT0000`
- Page: /datasets/mibi-tof-breast-b8acipvwv5xvmltt0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,847
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("b8ACipVwv5xvmltT0000").to_sdata()`


<a id="mibi-tof-breast-mre8mwsk6gpzqkna0000"></a>
## Human breast

- uid: `Mre8mWsK6GPZQkna0000`
- Page: /datasets/mibi-tof-breast-mre8mwsk6gpzqkna0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,979
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("Mre8mWsK6GPZQkna0000").to_sdata()`


<a id="mibi-tof-breast-exvpajfec0updd330000"></a>
## Human breast

- uid: `exvpAJFEc0UpDD330000`
- Page: /datasets/mibi-tof-breast-exvpajfec0updd330000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 5,678
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("exvpAJFEc0UpDD330000").to_sdata()`


<a id="mibi-tof-breast-zlqjzwupxm8rv0ce0000"></a>
## Human breast

- uid: `zLqJzWUpXM8Rv0CE0000`
- Page: /datasets/mibi-tof-breast-zlqjzwupxm8rv0ce0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,636
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("zLqJzWUpXM8Rv0CE0000").to_sdata()`


<a id="mibi-tof-breast-b37ke4744clpymf80000"></a>
## Human breast

- uid: `b37Ke4744CLpYmf80000`
- Page: /datasets/mibi-tof-breast-b37ke4744clpymf80000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,281
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("b37Ke4744CLpYmf80000").to_sdata()`


<a id="10x-xenium-middle-temporal-gyrus-ylsofzf9a8fx9zk00000"></a>
## Human middle temporal gyrus

- uid: `YLSofzf9a8FX9zK00000`
- Page: /datasets/10x-xenium-middle-temporal-gyrus-ylsofzf9a8fx9zk00000/
- Technology: 10x Xenium
- Organism: human
- Tissue: middle temporal gyrus
- Modality: RNA
- Observations (cells): 145,605
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335898
- Publication: https://doi.org/10.1016/j.cell.2026.07.007
- Load: `Catalog().dataset("YLSofzf9a8FX9zK00000").to_sdata()`


<a id="vizgen-merscope-brain-ukgp3rkicqmeiql80001"></a>
## Mouse brain

- uid: `UkgP3RkicQmEIQL80001`
- Page: /datasets/vizgen-merscope-brain-ukgp3rkicqmeiql80001/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 47,665
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/MERFISH-C57BL6J-638850.html
- Publication: https://doi.org/10.1038/s41586-023-06812-z
- Collections: [abc-merfish-c57bl6j-638850](/collections/md/e.md#abc-merfish-c57bl6j-638850)
- Load: `Catalog().dataset("UkgP3RkicQmEIQL80001").to_sdata()`


<a id="10x-xenium-sigmoid-colon-nlazdldwdi0zxyz50000"></a>
## Human sigmoid colon

- uid: `nlaZDlDWdI0ZXYZ50000`
- Page: /datasets/10x-xenium-sigmoid-colon-nlazdldwdi0zxyz50000/
- Technology: 10x Xenium
- Organism: human
- Tissue: sigmoid colon
- Modality: RNA
- Observations (cells): 34,963
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330953
- Publication: https://doi.org/10.1126/science.aeh7112
- Load: `Catalog().dataset("nlaZDlDWdI0ZXYZ50000").to_sdata()`