# SpatialData-DB datasets, shard 33

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-locus-ceruleus-ihd1ija29bd7oecq0000"></a>
## Human locus ceruleus

- uid: `Ihd1iJa29Bd7OeCq0000`
- Page: /datasets/visium-spatial-gene-expression-locus-ceruleus-ihd1ija29bd7oecq0000/
- Technology: Visium
- Organism: human
- Tissue: locus ceruleus
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307866
- Publication: https://doi.org/10.1101/2025.10.29.685354
- Collections: [geo-gse307866](/collections/md/9.md#geo-gse307866)
- Load: `Catalog().dataset("Ihd1iJa29Bd7OeCq0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-ixu0gjq9uqrhhcgf0000"></a>
## Human brain

- uid: `IxU0GJq9UqrhhcGf0000`
- Page: /datasets/visium-spatial-gene-expression-brain-ixu0gjq9uqrhhcgf0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: brain cancer
- Modality: RNA
- Observations (spots): 10,878
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/human-brain-cancer-11-mm-capture-area-ffpe-2-standard
- Load: `Catalog().dataset("IxU0GJq9UqrhhcGf0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-r0hi7aam1crjtqq60001"></a>
## Human colon

- uid: `r0hI7AaM1crJtqq60001`
- Page: /datasets/visium-spatial-gene-expression-colon-r0hi7aam1crjtqq60001/
- Technology: Visium
- Organism: human
- Tissue: colon
- Condition: colorectal adenocarcinoma
- Modality: RNA
- Observations (spots): 6,518
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/visium-cytassist-gene-expression-libraries-of-post-xenium-human-colon-cancer-ffpe-using-the-human-whole-transcriptome-probe-set-2-standard
- Load: `Catalog().dataset("r0hI7AaM1crJtqq60001").to_sdata()`


<a id="visium-spatial-gene-expression-colon-hyorf4uipnfl06i30000"></a>
## Mouse colon

- uid: `hYOrF4UipNFl06i30000`
- Page: /datasets/visium-spatial-gene-expression-colon-hyorf4uipnfl06i30000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colitis
- Modality: RNA
- Observations (spots): 5,806
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334067
- Publication: https://doi.org/10.1038/s41588-026-02673-0
- Collections: [geo-gse334067](/collections/md/b.md#geo-gse334067)
- Load: `Catalog().dataset("hYOrF4UipNFl06i30000").to_sdata()`


<a id="spatial-transcriptomics-breast-sx7hcepw8cxreei40000"></a>
## Human breast

- uid: `SX7HCepW8CxreEI40000`
- Page: /datasets/spatial-transcriptomics-breast-sx7hcepw8cxreei40000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 318
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aaf2403
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("SX7HCepW8CxreEI40000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-m119atpfwqqblsni0000"></a>
## Mouse spinal cord

- uid: `m119ATpFWqqbLsNI0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-m119atpfwqqblsni0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 244
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("m119ATpFWqqbLsNI0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-h3m59d8yfatame0k0000"></a>
## Human ovary

- uid: `h3m59d8yfATAme0K0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-h3m59d8yfatame0k0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian cancer
- Modality: RNA
- Observations (spots): 2,558
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE227019
- Publication: https://doi.org/10.1186/s12864-023-09192-w
- Collections: [geo-gse227019](/collections/md/f.md#geo-gse227019)
- Load: `Catalog().dataset("h3m59d8yfATAme0K0000").to_sdata()`


<a id="visium-spatial-gene-expression-mucosa-yh9tpln4i07bnfhj0000"></a>
## Human mucosa

- uid: `yh9TpLN4i07bnfHj0000`
- Page: /datasets/visium-spatial-gene-expression-mucosa-yh9tpln4i07bnfhj0000/
- Technology: Visium
- Organism: human
- Tissue: mucosa
- Condition: head and neck squamous cell carcinoma
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE268014
- Publication: https://doi.org/10.1038/s41588-026-02723-7
- Collections: [geo-gse268014](/collections/md/a.md#geo-gse268014)
- Load: `Catalog().dataset("yh9TpLN4i07bnfHj0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-bfl31yephg6bir1k0000"></a>
## Mouse lung

- uid: `bfL31yepHg6biR1K0000`
- Page: /datasets/visium-spatial-gene-expression-lung-bfl31yephg6bir1k0000/
- Technology: Visium
- Organism: mouse
- Tissue: lung
- Condition: lung adenocarcinoma
- Modality: RNA
- Observations (spots): 3,072
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE202159
- Publication: https://doi.org/10.1038/s41590-023-01504-2
- Collections: [geo-gse215361](/collections/md/1.md#geo-gse215361)
- Load: `Catalog().dataset("bfL31yepHg6biR1K0000").to_sdata()`


<a id="visium-spatial-gene-expression-spinal-cord-ki166efxasvpyqnj0000"></a>
## Mouse spinal cord

- uid: `Ki166EFxASvpyQnJ0000`
- Page: /datasets/visium-spatial-gene-expression-spinal-cord-ki166efxasvpyqnj0000/
- Technology: Visium
- Organism: mouse
- Tissue: spinal cord
- Modality: RNA
- Observations (spots): 1,417
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE256397
- Publication: https://doi.org/10.1016/j.devcel.2024.06.016
- Collections: [geo-gse256397](/collections/md/3.md#geo-gse256397)
- Load: `Catalog().dataset("Ki166EFxASvpyQnJ0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-ffw2qms8x8xlfugy0000"></a>
## Human pancreas

- uid: `FFW2QMs8X8XlfUGy0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-ffw2qms8x8xlfugy0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 3,089
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("FFW2QMs8X8XlfUGy0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-zsphnxqyc6hg57ua0000"></a>
## Human liver

- uid: `ZspHNxqYC6HG57uA0000`
- Page: /datasets/visium-spatial-gene-expression-liver-zsphnxqyc6hg57ua0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatoblastoma
- Modality: RNA
- Observations (spots): 4,049
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283207
- Publication: https://doi.org/10.1016/j.jhep.2025.01.031
- Collections: [geo-gse261958](/collections/md/b.md#geo-gse261958)
- Load: `Catalog().dataset("ZspHNxqYC6HG57uA0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-qjrovlmkki42tkiw0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `qjrovlmKKI42TKiW0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-qjrovlmkki42tkiw0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: bipolar disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("qjrovlmKKI42TKiW0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-jrui0nolizs6sefo0000"></a>
## Human prostate gland

- uid: `JRUI0nOLizS6SEfO0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-jrui0nolizs6sefo0000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostate cancer
- Modality: RNA
- Observations (spots): 991
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("JRUI0nOLizS6SEfO0000").to_sdata()`


<a id="10x-xenium-bone-tissue-6t1ales2sndpl1bq0001"></a>
## Mouse bone tissue

- uid: `6T1aLES2sndpL1bQ0001`
- Page: /datasets/10x-xenium-bone-tissue-6t1ales2sndpl1bq0001/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: bone tissue
- Modality: RNA
- Observations (cells): 348,141
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/mouse-bone-data-with-custom-add-on-panel-1-standard
- Collections: [10x-mouse-bone-data-with-custom-add-on-panel-1-standard](/collections/md/a.md#10x-mouse-bone-data-with-custom-add-on-panel-1-standard)
- Load: `Catalog().dataset("6T1aLES2sndpL1bQ0001").to_sdata()`


<a id="10x-xenium-cerebral-cortex-83u0p0hvnesf793n0000"></a>
## Mouse cerebral cortex

- uid: `83u0p0HvNESf793n0000`
- Page: /datasets/10x-xenium-cerebral-cortex-83u0p0hvnesf793n0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: cerebral cortex
- Modality: RNA
- Observations (cells): 126,119
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE255407
- Publication: https://doi.org/10.1016/j.stemcr.2024.03.002
- Load: `Catalog().dataset("83u0p0HvNESf793n0000").to_sdata()`


<a id="visium-spatial-gene-expression-spleen-uuntxamgedjgcbct0000"></a>
## Human spleen

- uid: `UUntXamgEdJGCbCT0000`
- Page: /datasets/visium-spatial-gene-expression-spleen-uuntxamgedjgcbct0000/
- Technology: Visium
- Organism: human
- Tissue: spleen
- Condition: myelofibrosis
- Modality: RNA
- Observations (spots): 4,896
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE332563
- Collections: [geo-gse332563](/collections/md/b.md#geo-gse332563)
- Load: `Catalog().dataset("UUntXamgEdJGCbCT0000").to_sdata()`


<a id="10x-xenium-heart-left-ventricle-3yusb5quv0l8twzo0000"></a>
## Mouse heart left ventricle

- uid: `3Yusb5qUV0L8tWzo0000`
- Page: /datasets/10x-xenium-heart-left-ventricle-3yusb5quv0l8twzo0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: heart left ventricle
- Modality: RNA
- Observations (cells): 40,754
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE280376
- Publication: https://doi.org/10.1038/s44161-025-00739-6
- Collections: [geo-gse280376](/collections/md/c.md#geo-gse280376)
- Load: `Catalog().dataset("3Yusb5qUV0L8tWzo0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-dox0nry5xaugvhfa0000"></a>
## Human pancreas

- uid: `DOx0nRY5XauGVhFA0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-dox0nry5xaugvhfa0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 3,040
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("DOx0nRY5XauGVhFA0000").to_sdata()`


<a id="visium-spatial-gene-expression-small-intestine-9zntt2bypc2uunay0000"></a>
## Mouse small intestine

- uid: `9ZnTT2byPC2UuNAY0000`
- Page: /datasets/visium-spatial-gene-expression-small-intestine-9zntt2bypc2uunay0000/
- Technology: Visium
- Organism: mouse
- Tissue: small intestine
- Modality: RNA
- Observations (spots): 4,585
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7106691
- Collections: [geo-gse227742](/collections/md/9.md#geo-gse227742)
- Load: `Catalog().dataset("9ZnTT2byPC2UuNAY0000").to_sdata()`


<a id="10x-xenium-oropharynx-ckr2rfvttfu1zvy10000"></a>
## Human oropharynx

- uid: `cKr2RfvttFU1zvy10000`
- Page: /datasets/10x-xenium-oropharynx-ckr2rfvttfu1zvy10000/
- Technology: 10x Xenium
- Organism: human
- Tissue: oropharynx
- Condition: head and neck squamous cell carcinoma
- Modality: RNA
- Observations (cells): 11,845
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324934
- Publication: https://doi.org/10.1186/s12916-026-04883-z
- Load: `Catalog().dataset("cKr2RfvttFU1zvy10000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-dq7wumnbeulpurbw0000"></a>
## Human lung

- uid: `dq7wUMNbeULpUrbw0000`
- Page: /datasets/visium-spatial-gene-expression-lung-dq7wumnbeulpurbw0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: chronic obstructive pulmonary disease
- Modality: RNA
- Observations (spots): 2,867
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318039
- Publication: https://doi.org/10.1186/s40364-026-00960-w
- Collections: [geo-gse318039](/collections/md/6.md#geo-gse318039)
- Load: `Catalog().dataset("dq7wUMNbeULpUrbw0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-oxe5aajwec9imhaf0000"></a>
## Macaque basal ganglion

- uid: `oXE5aAJweC9ImHaF0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-oxe5aajwec9imhaf0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 36,305
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("oXE5aAJweC9ImHaF0000").to_sdata()`


<a id="mibi-tof-breast-atxu2ynd2qigzuyq0000"></a>
## Human breast

- uid: `aTxU2ynD2qIGZUYq0000`
- Page: /datasets/mibi-tof-breast-atxu2ynd2qigzuyq0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,083
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("aTxU2ynD2qIGZUYq0000").to_sdata()`


<a id="vizgen-merscope-brain-5govabg914ilm9lh0000"></a>
## Mouse brain

- uid: `5GoVaBg914iLm9lH0000`
- Page: /datasets/vizgen-merscope-brain-5govabg914ilm9lh0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 254,538
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269617
- Load: `Catalog().dataset("5GoVaBg914iLm9lH0000").to_sdata()`


<a id="mibi-tof-breast-xdmhlerpqaabbj3y0000"></a>
## Human breast

- uid: `XDmhleRpqaAbbj3Y0000`
- Page: /datasets/mibi-tof-breast-xdmhlerpqaabbj3y0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,528
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("XDmhleRpqaAbbj3Y0000").to_sdata()`


<a id="10x-xenium-brain-m4rqeum14qoor5td0000"></a>
## Human brain

- uid: `M4rqeUm14qOOR5Td0000`
- Page: /datasets/10x-xenium-brain-m4rqeum14qoor5td0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (cells): 69,700
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260452
- Publication: https://doi.org/10.1038/s41586-026-10214-2
- Load: `Catalog().dataset("M4rqeUm14qOOR5Td0000").to_sdata()`


<a id="10x-xenium-small-intestine-rvpue2uymhtzjvs60000"></a>
## Human small intestine

- uid: `rVPuE2uyMHtzjVs60000`
- Page: /datasets/10x-xenium-small-intestine-rvpue2uymhtzjvs60000/
- Technology: 10x Xenium
- Organism: human
- Tissue: small intestine
- Condition: Crohn disease
- Modality: RNA
- Observations (cells): 242,022
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296331
- Publication: https://doi.org/10.1016/j.cell.2025.08.029
- Load: `Catalog().dataset("rVPuE2uyMHtzjVs60000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-x9kgcatal2ssvfov0000"></a>
## Human lymph node

- uid: `X9Kgcatal2sSvfOV0000`
- Page: /datasets/phenocycler-fusion-lymph-node-x9kgcatal2ssvfov0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: Burkitt lymphoma
- Modality: protein
- Observations (cells): 14,109
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("X9Kgcatal2sSvfOV0000").to_sdata()`


<a id="merfish-brain-6izkqt0m6wph9rhy0000"></a>
## Mouse brain

- uid: `6IzkQT0m6wPh9RhY0000`
- Page: /datasets/merfish-brain-6izkqt0m6wph9rhy0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 16,152
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("6IzkQT0m6wPh9RhY0000").to_sdata()`