# SpatialData-DB datasets, shard 2d

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="spatial-transcriptomics-spinal-cord-nkzrk4i63y7yuai30000"></a>
## Mouse spinal cord

- uid: `NkZrk4i63Y7yUAI30000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-nkzrk4i63y7yuai30000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 72
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("NkZrk4i63Y7yUAI30000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-owchzm8q1yilye3j0000"></a>
## Mouse spinal cord

- uid: `owcHZm8Q1YIlye3J0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-owchzm8q1yilye3j0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 328
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("owcHZm8Q1YIlye3J0000").to_sdata()`


<a id="spatial-transcriptomics-breast-nucbgly6e4dao6700000"></a>
## Human breast

- uid: `nuCBglY6e4DAo6700000`
- Page: /datasets/spatial-transcriptomics-breast-nucbgly6e4dao6700000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 441
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/34650042/
- Publication: https://doi.org/10.1038/s41467-021-26271-2
- Collections: [doi-10-1038-s41467-021-26271-2](/collections/md/6.md#doi-10-1038-s41467-021-26271-2)
- Load: `Catalog().dataset("nuCBglY6e4DAo6700000").to_sdata()`


<a id="visium-spatial-gene-expression-eye-trp86aypnzngq3jv0000"></a>
## Mouse eye

- uid: `TRp86aypNzNgq3jv0000`
- Page: /datasets/visium-spatial-gene-expression-eye-trp86aypnzngq3jv0000/
- Technology: Visium
- Organism: mouse
- Tissue: eye
- Modality: RNA
- Observations (spots): 1,106
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9628215/
- Publication: https://doi.org/10.3389/fimmu.2022.1011125
- Collections: [doi-10-3389-fimmu-2022-1011125](/collections/md/0.md#doi-10-3389-fimmu-2022-1011125)
- Load: `Catalog().dataset("TRp86aypNzNgq3jv0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-pkw6p4bbknwjfi5e0000"></a>
## Mouse brain

- uid: `PKW6p4BBknwjFi5e0000`
- Page: /datasets/visium-spatial-gene-expression-brain-pkw6p4bbknwjfi5e0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,283
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313896
- Publication: https://doi.org/10.1016/j.cell.2026.03.013
- Collections: [geo-gse313896](/collections/md/f.md#geo-gse313896)
- Load: `Catalog().dataset("PKW6p4BBknwjFi5e0000").to_sdata()`


<a id="10x-xenium-kidney-yv8wjzbpeflbdkcx0000"></a>
## Human kidney

- uid: `Yv8wJzBPEFlbdKcx0000`
- Page: /datasets/10x-xenium-kidney-yv8wjzbpeflbdkcx0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Modality: RNA
- Observations (cells): 339,498
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8933091
- Publication: https://doi.org/10.1038/s41467-025-59819-7
- Collections: [geo-gse294965](/collections/md/2.md#geo-gse294965)
- Load: `Catalog().dataset("Yv8wJzBPEFlbdKcx0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-gjyoonzqossxmp4f0000"></a>
## Mouse liver

- uid: `gJYOONzQoSsXmP4f0000`
- Page: /datasets/visium-spatial-gene-expression-liver-gjyoonzqossxmp4f0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Condition: metabolic dysfunction-associated steatohepatitis
- Modality: RNA
- Observations (spots): 3,184
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE248077
- Collections: [geo-gse248077](/collections/md/f.md#geo-gse248077)
- Load: `Catalog().dataset("gJYOONzQoSsXmP4f0000").to_sdata()`


<a id="spatial-transcriptomics-breast-hj8sinxmcwkxfekp0001"></a>
## Human breast

- uid: `hj8sinxMcwkxfeKp0001`
- Page: /datasets/spatial-transcriptomics-breast-hj8sinxmcwkxfekp0001/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 306
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/34650042/
- Publication: https://doi.org/10.1038/s41467-021-26271-2
- Collections: [doi-10-1038-s41467-021-26271-2](/collections/md/6.md#doi-10-1038-s41467-021-26271-2)
- Load: `Catalog().dataset("hj8sinxMcwkxfeKp0001").to_sdata()`


<a id="10x-xenium-eye-d7pfgkcamnqj7sww0000"></a>
## Mouse eye

- uid: `D7PfGKcamnQj7SWW0000`
- Page: /datasets/10x-xenium-eye-d7pfgkcamnqj7sww0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: eye
- Condition: lipodystrophy
- Modality: RNA
- Observations (cells): 60,468
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE345289
- Load: `Catalog().dataset("D7PfGKcamnQj7SWW0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-hqxia94cm5zfia2n0000"></a>
## Mouse kidney

- uid: `hqxIa94cm5zFiA2n0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-hqxia94cm5zfia2n0000/
- Technology: Visium
- Organism: mouse
- Tissue: kidney
- Condition: acute kidney failure
- Modality: RNA
- Observations (spots): 2,212
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5543482
- Collections: [geo-gse182939](/collections/md/d.md#geo-gse182939)
- Load: `Catalog().dataset("hqxIa94cm5zFiA2n0000").to_sdata()`


<a id="10x-xenium-bone-marrow-z6zy7werm5jvx99q0000"></a>
## Human bone marrow

- uid: `Z6Zy7weRm5jVx99q0000`
- Page: /datasets/10x-xenium-bone-marrow-z6zy7werm5jvx99q0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: bone marrow
- Condition: plasma cell myeloma
- Modality: RNA
- Observations (cells): 60,024
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288340
- Load: `Catalog().dataset("Z6Zy7weRm5jVx99q0000").to_sdata()`


<a id="visium-spatial-gene-expression-mediastinal-lymph-node-brv9fsf7wglhmcde0000"></a>
## Human mediastinal lymph node

- uid: `brV9FSF7WGLHmcdE0000`
- Page: /datasets/visium-spatial-gene-expression-mediastinal-lymph-node-brv9fsf7wglhmcde0000/
- Technology: Visium
- Organism: human
- Tissue: mediastinal lymph node
- Condition: acute myeloid leukemia
- Modality: RNA
- Observations (spots): 3,431
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8576306
- Collections: [geo-gse279576](/collections/md/c.md#geo-gse279576)
- Load: `Catalog().dataset("brV9FSF7WGLHmcdE0000").to_sdata()`


<a id="visium-spatial-gene-expression-amygdala-tebtj3a5kax10idw0000"></a>
## Human amygdala

- uid: `teBtj3a5Kax10IdW0000`
- Page: /datasets/visium-spatial-gene-expression-amygdala-tebtj3a5kax10idw0000/
- Technology: Visium
- Organism: human
- Tissue: amygdala
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Collections: [geo-gse342709](/collections/md/a.md#geo-gse342709)
- Load: `Catalog().dataset("teBtj3a5Kax10IdW0000").to_sdata()`


<a id="visium-spatial-gene-expression-unknown-9a3ii2qpydhjgrbe0000"></a>
## Human unknown

- uid: `9A3II2QPydhJgRbE0000`
- Page: /datasets/visium-spatial-gene-expression-unknown-9a3ii2qpydhjgrbe0000/
- Technology: Visium
- Organism: human
- Tissue: unknown
- Condition: diffuse large B-cell lymphoma
- Modality: RNA
- Observations (spots): 7,935
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9980515
- Collections: [geo-gse344506](/collections/md/1.md#geo-gse344506)
- Load: `Catalog().dataset("9A3II2QPydhJgRbE0000").to_sdata()`


<a id="merfish-brain-vfjpzbrqemxmazr90000"></a>
## Mouse brain

- uid: `vfjPZBrQemxmAzr90000`
- Page: /datasets/merfish-brain-vfjpzbrqemxmazr90000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 41,234
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-3.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-3](/collections/md/6.md#abc-zhuang-abca-3)
- Load: `Catalog().dataset("vfjPZBrQemxmAzr90000").to_sdata()`


<a id="stereo-seq-thymus-ltzcgj4vaollgktm0000"></a>
## Human thymus

- uid: `LTzCgJ4vaollGKtm0000`
- Page: /datasets/stereo-seq-thymus-ltzcgj4vaollgktm0000/
- Technology: Stereo-seq
- Organism: human
- Tissue: thymus
- Modality: RNA
- Observations: 27,078
- Licence: CC BY 4.0
- Source: https://zenodo.org/records/12595241
- Collections: [zenodo-12595241](/collections/md/4.md#zenodo-12595241)
- Load: `Catalog().dataset("LTzCgJ4vaollGKtm0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-up82ylom3jxstk7h0000"></a>
## Human kidney

- uid: `uP82YlOM3JXstK7h0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-up82ylom3jxstk7h0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 7,055
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2018-09-14_22h35m17s
- Load: `Catalog().dataset("uP82YlOM3JXstK7h0000").to_sdata()`


<a id="vizgen-merscope-barrel-cortex-9pdpsofsyhdrfd0z0000"></a>
## Mouse barrel cortex

- uid: `9PdpSOfSYHDRfd0z0000`
- Page: /datasets/vizgen-merscope-barrel-cortex-9pdpsofsyhdrfd0z0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: barrel cortex
- Modality: RNA
- Observations (cells): 202,554
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298314
- Publication: https://doi.org/10.1016/j.cell.2025.08.023
- Collections: [geo-gse298314](/collections/md/b.md#geo-gse298314)
- Load: `Catalog().dataset("9PdpSOfSYHDRfd0z0000").to_sdata()`


<a id="vizgen-merscope-brain-x9luikfoelknx12m0000"></a>
## Mouse brain

- uid: `X9luiKFoElkNx12M0000`
- Page: /datasets/vizgen-merscope-brain-x9luikfoelknx12m0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Condition: brain injury
- Modality: RNA
- Observations (cells): 1,550,129
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE255892
- Load: `Catalog().dataset("X9luiKFoElkNx12M0000").to_sdata()`


<a id="mibi-tof-breast-1umcvuocosq3huxd0000"></a>
## Human breast

- uid: `1uMCvuOCoSQ3HUxd0000`
- Page: /datasets/mibi-tof-breast-1umcvuocosq3huxd0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,387
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("1uMCvuOCoSQ3HUxd0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-bnvxvcfdxtl96fk10000"></a>
## Human kidney

- uid: `BnVxvCfDXtl96FK10000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-bnvxvcfdxtl96fk10000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 15,876
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-12-27_20h42m26s
- Load: `Catalog().dataset("BnVxvCfDXtl96FK10000").to_sdata()`


<a id="10x-xenium-kidney-vuidecxkuqd9m6b80000"></a>
## Human kidney

- uid: `VuiDeCXkuqd9M6B80000`
- Page: /datasets/10x-xenium-kidney-vuidecxkuqd9m6b80000/
- Technology: 10x Xenium
- Organism: human
- Tissue: kidney
- Condition: acute tubulointerstitial nephritis
- Modality: RNA
- Observations (cells): 13,860
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE336890
- Load: `Catalog().dataset("VuiDeCXkuqd9M6B80000").to_sdata()`


<a id="mibi-tof-breast-hfhmkuuajmhwxxfj0000"></a>
## Human breast

- uid: `hfhmKUuAJMhWxxFJ0000`
- Page: /datasets/mibi-tof-breast-hfhmkuuajmhwxxfj0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,504
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("hfhmKUuAJMhWxxFJ0000").to_sdata()`


<a id="10x-xenium-breast-2nres1cdkzqatamd0000"></a>
## Human breast

- uid: `2NreS1cDkzQataMD0000`
- Page: /datasets/10x-xenium-breast-2nres1cdkzqatamd0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: breast
- Condition: breast cancer
- Modality: RNA
- Observations (cells): 53,057
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311609
- Publication: https://doi.org/10.1038/s41592-026-03089-8
- Load: `Catalog().dataset("2NreS1cDkzQataMD0000").to_sdata()`


<a id="10x-xenium-brain-966d2pmvvs5tterz0000"></a>
## Mouse brain

- uid: `966d2PMVVs5ttERZ0000`
- Page: /datasets/10x-xenium-brain-966d2pmvvs5tterz0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 87,165
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337270
- Load: `Catalog().dataset("966d2PMVVs5ttERZ0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-5kzi0o8agktignwd0000"></a>
## Human kidney

- uid: `5KzI0O8AGkTIGnwD0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-5kzi0o8agktignwd0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 22,386
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-12-20_03h10m15s
- Load: `Catalog().dataset("5KzI0O8AGkTIGnwD0000").to_sdata()`