# SpatialData-DB datasets, shard 2a

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-colon-2xa3vkukx9ack0uo0000"></a>
## Mouse colon

- uid: `2xA3VkUKX9ACK0uo0000`
- Page: /datasets/visium-spatial-gene-expression-colon-2xa3vkukx9ack0uo0000/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colitis
- Modality: RNA
- Observations (spots): 3,356
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334067
- Publication: https://doi.org/10.1038/s41588-026-02673-0
- Collections: [geo-gse334067](/collections/md/b.md#geo-gse334067)
- Load: `Catalog().dataset("2xA3VkUKX9ACK0uo0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-dnwbxoepqkmyz7kt0000"></a>
## Human liver

- uid: `dnWBxOePqkMyZ7kT0000`
- Page: /datasets/visium-spatial-gene-expression-liver-dnwbxoepqkmyz7kt0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: hepatoblastoma
- Modality: RNA
- Observations (spots): 462
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE261958
- Publication: https://doi.org/10.1016/j.jhep.2025.01.031
- Collections: [geo-gse261958](/collections/md/b.md#geo-gse261958)
- Load: `Catalog().dataset("dnWBxOePqkMyZ7kT0000").to_sdata()`


<a id="spatial-transcriptomics-brain-2dfb4uffclzgydj30000"></a>
## Mouse brain

- uid: `2Dfb4UfFcLZgYdJ30000`
- Page: /datasets/spatial-transcriptomics-brain-2dfb4uffclzgydj30000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 490
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/sciadv.abb3446
- Publication: https://doi.org/10.1126/sciadv.abb3446
- Collections: [doi-10-1126-sciadv-abb3446](/collections/md/a.md#doi-10-1126-sciadv-abb3446)
- Load: `Catalog().dataset("2Dfb4UfFcLZgYdJ30000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-vee2nadrni6tjeil0000"></a>
## Mouse spinal cord

- uid: `Vee2NaDrni6tjEIl0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-vee2nadrni6tjeil0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 280
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("Vee2NaDrni6tjEIl0000").to_sdata()`


<a id="visium-spatial-gene-expression-eye-wigngacvzdwmgh7m0000"></a>
## Human eye

- uid: `wIgngacVzdwmGH7m0000`
- Page: /datasets/visium-spatial-gene-expression-eye-wigngacvzdwmgh7m0000/
- Technology: Visium
- Organism: human
- Tissue: eye
- Condition: wet macular degeneration
- Modality: RNA
- Observations (spots): 724
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10312719/
- Publication: https://doi.org/10.1101/2023.06.16.544770
- Collections: [doi-10-1101-2023-06-16-544770](/collections/md/3.md#doi-10-1101-2023-06-16-544770)
- Load: `Catalog().dataset("wIgngacVzdwmGH7m0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-wtakbgakdcyvdrm20000"></a>
## Human prostate gland

- uid: `wtAKBGAKDCyvdrm20000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-wtakbgakdcyvdrm20000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostatic acinar adenocarcinoma
- Modality: RNA
- Observations (spots): 1,633
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-022-05023-2
- Publication: https://doi.org/10.1038/s41586-022-05023-2
- Collections: [doi-10-1038-s41586-022-05023-2](/collections/md/5.md#doi-10-1038-s41586-022-05023-2)
- Load: `Catalog().dataset("wtAKBGAKDCyvdrm20000").to_sdata()`


<a id="visium-hd-liver-2lnjgyk6zprykfdi0003"></a>
## Rat liver

- uid: `2Lnjgyk6ZprYkfDI0003`
- Page: /datasets/visium-hd-liver-2lnjgyk6zprykfdi0003/
- Technology: Visium HD
- Organism: rat
- Tissue: liver
- Modality: RNA
- Observations (bins): 499,460
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/visium-hd-cytassist-6p5mm-rat-liver
- Load: `Catalog().dataset("2Lnjgyk6ZprYkfDI0003").to_sdata()`


<a id="vizgen-merscope-brain-fkfb3ezxmpifapdc0000"></a>
## Mouse brain

- uid: `FkFb3eZxmPifaPDC0000`
- Page: /datasets/vizgen-merscope-brain-fkfb3ezxmpifapdc0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 10,229
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329718
- Load: `Catalog().dataset("FkFb3eZxmPifaPDC0000").to_sdata()`


<a id="visium-spatial-gene-expression-palatine-tonsil-bviv81jwikdyrlrn0000"></a>
## Human palatine tonsil

- uid: `bvIv81JWikDYRLRn0000`
- Page: /datasets/visium-spatial-gene-expression-palatine-tonsil-bviv81jwikdyrlrn0000/
- Technology: Visium
- Organism: human
- Tissue: palatine tonsil
- Condition: oropharynx squamous cell carcinoma
- Modality: RNA
- Observations (spots): 4,925
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE289363
- Publication: https://doi.org/10.1186/s12967-026-08082-5
- Collections: [geo-gse289363](/collections/md/a.md#geo-gse289363)
- Load: `Catalog().dataset("bvIv81JWikDYRLRn0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-bfyb41p70ymbjo4l0001"></a>
## Mouse colon

- uid: `BFYB41p70YMBJo4l0001`
- Page: /datasets/visium-spatial-gene-expression-colon-bfyb41p70ymbjo4l0001/
- Technology: Visium
- Organism: mouse
- Tissue: colon
- Condition: colorectal cancer
- Modality: RNA
- Observations (spots): 3,211
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE284989
- Publication: https://doi.org/10.3389/fonc.2025.1549237
- Collections: [geo-gse284989](/collections/md/1.md#geo-gse284989)
- Load: `Catalog().dataset("BFYB41p70YMBJo4l0001").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-3jo9sylyliaqvixd0000"></a>
## Human pancreas

- uid: `3JO9sYlyLiaQvIxD0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-3jo9sylyliaqvixd0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 4,885
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327056
- Publication: https://doi.org/10.3389/fonc.2026.1852367
- Collections: [geo-gse327056](/collections/md/a.md#geo-gse327056)
- Load: `Catalog().dataset("3JO9sYlyLiaQvIxD0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-g3tejm0cdgyymf680000"></a>
## Human pancreas

- uid: `G3TEJm0cDGYymF680000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-g3tejm0cdgyymf680000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,932
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274665
- Publication: https://doi.org/10.1038/s41467-024-54975-8
- Collections: [geo-gse274665](/collections/md/e.md#geo-gse274665)
- Load: `Catalog().dataset("G3TEJm0cDGYymF680000").to_sdata()`


<a id="10x-xenium-rectum-oiailkulrrm3pdap0000"></a>
## Human rectum

- uid: `OIAilKulrRM3PDaP0000`
- Page: /datasets/10x-xenium-rectum-oiailkulrrm3pdap0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: rectum
- Condition: ulcerative colitis
- Modality: RNA
- Observations (cells): 35,904
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312420
- Publication: https://doi.org/10.1038/s41467-026-72482-w
- Load: `Catalog().dataset("OIAilKulrRM3PDaP0000").to_sdata()`


<a id="10x-xenium-tail-u0dxyh4ifrfzhmxd0000"></a>
## Ambystoma mexicanum tail

- uid: `u0dXyh4IfrfZHmXd0000`
- Page: /datasets/10x-xenium-tail-u0dxyh4ifrfzhmxd0000/
- Technology: 10x Xenium
- Organism: ambystoma mexicanum
- Tissue: tail
- Modality: RNA
- Observations (cells): 36,333
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313338
- Load: `Catalog().dataset("u0dXyh4IfrfZHmXd0000").to_sdata()`


<a id="visium-spatial-gene-expression-peritoneum-ux78feofehotiocm0000"></a>
## Human peritoneum

- uid: `ux78FEOfEhOtiOCm0000`
- Page: /datasets/visium-spatial-gene-expression-peritoneum-ux78feofehotiocm0000/
- Technology: Visium
- Organism: human
- Tissue: peritoneum
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,883
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8452895
- Collections: [geo-gse274557](/collections/md/1.md#geo-gse274557)
- Load: `Catalog().dataset("ux78FEOfEhOtiOCm0000").to_sdata()`


<a id="10x-xenium-skin-of-body-y0eyodahrdvnfbvx0001"></a>
## Human skin of body

- uid: `y0eYODAHRDVnFbvx0001`
- Page: /datasets/10x-xenium-skin-of-body-y0eyodahrdvnfbvx0001/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Condition: melanoma
- Modality: RNA
- Observations (cells): 87,499
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/human-skin-preview-data-xenium-human-skin-gene-expression-panel-add-on-1-standard
- Load: `Catalog().dataset("y0eYODAHRDVnFbvx0001").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-kfu6gkvrhdmhxnf90000"></a>
## Human prostate gland

- uid: `kfU6GkVrhDmHxNf90000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-kfu6gkvrhdmhxnf90000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: benign prostatic hyperplasia
- Modality: RNA
- Observations (spots): 1,317
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278936
- Publication: https://doi.org/10.1038/s41467-024-54364-1
- Collections: [geo-gse278936](/collections/md/1.md#geo-gse278936)
- Load: `Catalog().dataset("kfU6GkVrhDmHxNf90000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-xhzfhmtn20ydaltv0000"></a>
## Human lung

- uid: `xhzfHmTN20YdAltv0000`
- Page: /datasets/visium-spatial-gene-expression-lung-xhzfhmtn20ydaltv0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: sarcoidosis
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288607
- Collections: [geo-gse288607](/collections/md/6.md#geo-gse288607)
- Load: `Catalog().dataset("xhzfHmTN20YdAltv0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-lung-n8yypnjeoazw28ro0000"></a>
## Human lung

- uid: `n8yYPnJeoazW28RO0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-lung-n8yypnjeoazw28ro0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: lung
- Condition: bronchopulmonary dysplasia
- Modality: Metabolomics
- Observations: 7,738
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-06-27_22h58m01s
- Load: `Catalog().dataset("n8yYPnJeoazW28RO0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-spleen-abugrbso2pjdsalp0000"></a>
## Mouse spleen

- uid: `ABuGrBsO2PJDsaLP0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-spleen-abugrbso2pjdsalp0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: spleen
- Modality: Metabolomics
- Observations: 153,400
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2026-03-16_20h31m00s
- Load: `Catalog().dataset("ABuGrBsO2PJDsaLP0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-ktz51fuiukq6sdcs0000"></a>
## Human lymph node

- uid: `kTZ51FUiUKQ6SDcS0000`
- Page: /datasets/phenocycler-fusion-lymph-node-ktz51fuiukq6sdcs0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 15,087
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("kTZ51FUiUKQ6SDcS0000").to_sdata()`


<a id="mibi-tof-breast-vimlay9vaml3yk0p0000"></a>
## Human breast

- uid: `ViMLAY9vaml3Yk0p0000`
- Page: /datasets/mibi-tof-breast-vimlay9vaml3yk0p0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,851
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("ViMLAY9vaml3Yk0p0000").to_sdata()`


<a id="mibi-tof-breast-qxnpq95kddgbpd0g0000"></a>
## Human breast

- uid: `qXnpq95kDDgbpD0G0000`
- Page: /datasets/mibi-tof-breast-qxnpq95kddgbpd0g0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 378
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("qXnpq95kDDgbpD0G0000").to_sdata()`


<a id="mibi-tof-brain-yxuciqlgldkfz4xh0000"></a>
## Human brain

- uid: `yXuCIQLGlDkfZ4xh0000`
- Page: /datasets/mibi-tof-brain-yxuciqlgldkfz4xh0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: brain
- Condition: glioma
- Modality: protein
- Observations: 2,465
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1579
- Collections: [bia-s-biad1579](/collections/md/2.md#bia-s-biad1579)
- Load: `Catalog().dataset("yXuCIQLGlDkfZ4xh0000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-ujjnsjoouzmjnpiv0000"></a>
## Human skin of body

- uid: `UJjNSjOoUZMjnPIv0000`
- Page: /datasets/vizgen-merscope-skin-of-body-ujjnsjoouzmjnpiv0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 8,168
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("UJjNSjOoUZMjnPIv0000").to_sdata()`


<a id="mibi-tof-breast-dyvhirespmf7qmyt0000"></a>
## Human breast

- uid: `DYvhIrESPMF7QmyT0000`
- Page: /datasets/mibi-tof-breast-dyvhirespmf7qmyt0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 5,320
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("DYvhIrESPMF7QmyT0000").to_sdata()`


<a id="mibi-tof-breast-8efy1tbs4ci9mb7x0000"></a>
## Human breast

- uid: `8eFY1TbS4Ci9MB7x0000`
- Page: /datasets/mibi-tof-breast-8efy1tbs4ci9mb7x0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 5,477
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("8eFY1TbS4Ci9MB7x0000").to_sdata()`


<a id="10x-xenium-lung-mo17ekflvpzyosop0000"></a>
## Human lung

- uid: `MO17EKFlVPzYOSOP0000`
- Page: /datasets/10x-xenium-lung-mo17ekflvpzyosop0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (cells): 46,291
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310162
- Load: `Catalog().dataset("MO17EKFlVPzYOSOP0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-8hi1jfnuzzjlocs90000"></a>
## Human lymph node

- uid: `8hI1jFNuzZjLocS90000`
- Page: /datasets/phenocycler-fusion-lymph-node-8hi1jfnuzzjlocs90000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: primary mediastinal large B-cell lymphoma
- Modality: protein
- Observations (cells): 7,620
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("8hI1jFNuzZjLocS90000").to_sdata()`


<a id="mibi-tof-breast-y5kxb6zvqp0q3awz0000"></a>
## Human breast

- uid: `y5kxb6zvqp0q3Awz0000`
- Page: /datasets/mibi-tof-breast-y5kxb6zvqp0q3awz0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,787
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("y5kxb6zvqp0q3Awz0000").to_sdata()`