# SpatialData-DB datasets, shard 1d

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-ovary-v4pqcxdb83dmtg2k0000"></a>
## Human ovary

- uid: `V4PqcXdb83DmtG2k0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-v4pqcxdb83dmtg2k0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian cancer
- Modality: RNA
- Observations (spots): 3,455
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/human-ovarian-cancer-1-standard
- Load: `Catalog().dataset("V4PqcXdb83DmtG2k0000").to_sdata()`


<a id="visium-spatial-gene-expression-colon-3kv4urjh9wovpwxx0000"></a>
## Human colon

- uid: `3Kv4Urjh9wOvpWxx0000`
- Page: /datasets/visium-spatial-gene-expression-colon-3kv4urjh9wovpwxx0000/
- Technology: Visium
- Organism: human
- Tissue: colon
- Modality: RNA
- Observations (spots): 10,493
- Licence: CC BY 4.0
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312204
- Publication: https://doi.org/10.1038/s41467-026-71944-5
- Collections: [geo-gse312204](/collections/md/4.md#geo-gse312204)
- Load: `Catalog().dataset("3Kv4Urjh9wOvpWxx0000").to_sdata()`


<a id="spatial-transcriptomics-brain-htgzqu22hdxysapx0000"></a>
## Mouse brain

- uid: `hTGzQU22hDXySapX0000`
- Page: /datasets/spatial-transcriptomics-brain-htgzqu22hdxysapx0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 269
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/27365449/
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("hTGzQU22hDXySapX0000").to_sdata()`


<a id="spatial-transcriptomics-breast-femgtddolz5qqg5e0000"></a>
## Human breast

- uid: `feMGtdDoLZ5qQG5E0000`
- Page: /datasets/spatial-transcriptomics-breast-femgtddolz5qqg5e0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 428
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aaf2403
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("feMGtdDoLZ5qQG5E0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-kzavgzkm79msovxg0000"></a>
## Mouse spinal cord

- uid: `kZavGzkM79mSOvxg0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-kzavgzkm79msovxg0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 246
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("kZavGzkM79mSOvxg0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-tsix7g8juvxi65g20000"></a>
## Mouse liver

- uid: `tsIx7g8JuVxi65g20000`
- Page: /datasets/visium-spatial-gene-expression-liver-tsix7g8juvxi65g20000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 4,992
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-024-07376-2
- Publication: https://doi.org/10.1038/s41586-024-07376-2
- Collections: [doi-10-1038-s41586-024-07376-2](/collections/md/7.md#doi-10-1038-s41586-024-07376-2)
- Load: `Catalog().dataset("tsIx7g8JuVxi65g20000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-moapdfdslnsbjiuw0000"></a>
## Human basal ganglion

- uid: `mOaPDFDslNsBjIuW0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-moapdfdslnsbjiuw0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 81,774
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("mOaPDFDslNsBjIuW0000").to_sdata()`


<a id="visium-spatial-gene-expression-lymph-node-td78zhhhfmk4e9vt0000"></a>
## Human lymph node

- uid: `Td78zHHHfmK4E9vt0000`
- Page: /datasets/visium-spatial-gene-expression-lymph-node-td78zhhhfmk4e9vt0000/
- Technology: Visium
- Organism: human
- Tissue: lymph node
- Condition: diffuse large B-cell lymphoma
- Modality: RNA
- Observations (spots): 1,827
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE276542
- Publication: https://doi.org/10.1080/2162402X.2026.2660418
- Collections: [geo-gse276542](/collections/md/2.md#geo-gse276542)
- Load: `Catalog().dataset("Td78zHHHfmK4E9vt0000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-zq0jv0niaaqvvk9r0000"></a>
## Human lung

- uid: `ZQ0jv0NIAaqvVk9R0000`
- Page: /datasets/visium-spatial-gene-expression-lung-zq0jv0niaaqvvk9r0000/
- Technology: Visium
- Organism: human
- Tissue: lung
- Condition: lung adenocarcinoma
- Modality: RNA
- Observations (spots): 2,620
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273378
- Publication: https://doi.org/10.1038/s41467-026-70600-2
- Collections: [geo-gse273378](/collections/md/2.md#geo-gse273378)
- Load: `Catalog().dataset("ZQ0jv0NIAaqvVk9R0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsal-root-ganglion-pveli4htiitwwhr60000"></a>
## Crab-eating macaque dorsal root ganglion

- uid: `PVELI4htiiTwwhr60000`
- Page: /datasets/visium-spatial-gene-expression-dorsal-root-ganglion-pveli4htiitwwhr60000/
- Technology: Visium
- Organism: crab-eating macaque
- Tissue: dorsal root ganglion
- Modality: RNA
- Observations (spots): 4,991
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9369731
- Collections: [geo-gse313530](/collections/md/2.md#geo-gse313530)
- Load: `Catalog().dataset("PVELI4htiiTwwhr60000").to_sdata()`


<a id="10x-xenium-lung-mxrdqy4r6tcqrxdc0000"></a>
## Mouse lung

- uid: `MxRdQY4R6tCQrXDC0000`
- Page: /datasets/10x-xenium-lung-mxrdqy4r6tcqrxdc0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: lung
- Condition: lung adenocarcinoma
- Modality: RNA
- Observations (cells): 485,208
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335211
- Load: `Catalog().dataset("MxRdQY4R6tCQrXDC0000").to_sdata()`


<a id="visium-spatial-gene-expression-unknown-r8jyyeixncljwacx0000"></a>
## Human unknown

- uid: `R8jyyeIXncLJWaCX0000`
- Page: /datasets/visium-spatial-gene-expression-unknown-r8jyyeixncljwacx0000/
- Technology: Visium
- Organism: human
- Tissue: unknown
- Condition: diffuse large B-cell lymphoma
- Modality: RNA
- Observations (spots): 4,153
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9980512
- Collections: [geo-gse344506](/collections/md/1.md#geo-gse344506)
- Load: `Catalog().dataset("R8jyyeIXncLJWaCX0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-f0wrvay9gjv0vgrl0000"></a>
## Mouse kidney

- uid: `F0wrvAY9gjv0VGrL0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-f0wrvay9gjv0vgrl0000/
- Technology: Visium
- Organism: mouse
- Tissue: kidney
- Condition: renal fibrosis
- Modality: RNA
- Observations (spots): 2,027
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273978
- Publication: https://doi.org/10.1124/jpet.124.002330
- Collections: [geo-gse273978](/collections/md/9.md#geo-gse273978)
- Load: `Catalog().dataset("F0wrvAY9gjv0VGrL0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-akdqhr1cigahwagj0000"></a>
## Macaque basal ganglion

- uid: `AKdQhR1cIgaHWagJ0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-akdqhr1cigahwagj0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 16,001
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("AKdQhR1cIgaHWagJ0000").to_sdata()`


<a id="merfish-brain-hp1d9bd3cukaju2r0000"></a>
## Mouse brain

- uid: `HP1d9bd3cUkAjU2r0000`
- Page: /datasets/merfish-brain-hp1d9bd3cukaju2r0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 24,821
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("HP1d9bd3cUkAjU2r0000").to_sdata()`


<a id="merfish-brain-4nt12f8qvxdznilm0000"></a>
## Mouse brain

- uid: `4NT12f8QVxDzNIlM0000`
- Page: /datasets/merfish-brain-4nt12f8qvxdznilm0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 26,705
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("4NT12f8QVxDzNIlM0000").to_sdata()`


<a id="mibi-tof-breast-0zlx7zdxxcpyykfa0000"></a>
## Human breast

- uid: `0zLx7ZdxXcpYykfA0000`
- Page: /datasets/mibi-tof-breast-0zlx7zdxxcpyykfa0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,351
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("0zLx7ZdxXcpYykfA0000").to_sdata()`


<a id="mibi-tof-breast-jcle1q5betzqacyo0000"></a>
## Human breast

- uid: `jcLE1q5bEtZqACyo0000`
- Page: /datasets/mibi-tof-breast-jcle1q5betzqacyo0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,176
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("jcLE1q5bEtZqACyo0000").to_sdata()`


<a id="stereo-seq-thymus-ka7ts3vhph9yduns0000"></a>
## Mouse thymus

- uid: `Ka7ts3vHpH9YdUNs0000`
- Page: /datasets/stereo-seq-thymus-ka7ts3vhph9yduns0000/
- Technology: Stereo-seq
- Organism: mouse
- Tissue: thymus
- Modality: RNA
- Observations: 20,196
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333479
- Collections: [geo-gse333479](/collections/md/4.md#geo-gse333479)
- Load: `Catalog().dataset("Ka7ts3vHpH9YdUNs0000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-bfgs5uvhtrsfezon0000"></a>
## Human skin of body

- uid: `bfGS5uVhtrsFezon0000`
- Page: /datasets/vizgen-merscope-skin-of-body-bfgs5uvhtrsfezon0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 17,791
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("bfGS5uVhtrsFezon0000").to_sdata()`


<a id="10x-xenium-common-carotid-artery-plus-branches-nqprxzf4my9mquj90000"></a>
## Human common carotid artery plus branches

- uid: `nqPRXZF4my9mqUj90000`
- Page: /datasets/10x-xenium-common-carotid-artery-plus-branches-nqprxzf4my9mquj90000/
- Technology: 10x Xenium
- Organism: human
- Tissue: common carotid artery plus branches
- Condition: atherosclerosis
- Modality: RNA
- Observations (cells): 30,205
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294466
- Publication: https://doi.org/10.1038/s41467-025-67679-4
- Load: `Catalog().dataset("nqPRXZF4my9mqUj90000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-placenta-1xpkmq8kxuah7xs90000"></a>
## Human placenta

- uid: `1xpkmq8KxUaH7xS90000`
- Page: /datasets/maldi-mass-spectrometry-imaging-placenta-1xpkmq8kxuah7xs90000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: placenta
- Modality: Metabolomics
- Observations: 1,563,408
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2026-05-10_23h27m05s
- Load: `Catalog().dataset("1xpkmq8KxUaH7xS90000").to_sdata()`


<a id="10x-xenium-common-carotid-artery-plus-branches-oqlehwbogeehteoe0000"></a>
## Human common carotid artery plus branches

- uid: `oqLEHWbOgEeHtEoE0000`
- Page: /datasets/10x-xenium-common-carotid-artery-plus-branches-oqlehwbogeehteoe0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: common carotid artery plus branches
- Condition: atherosclerosis
- Modality: RNA
- Observations (cells): 25,207
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294466
- Publication: https://doi.org/10.1038/s41467-025-67679-4
- Load: `Catalog().dataset("oqLEHWbOgEeHtEoE0000").to_sdata()`