# SpatialData-DB datasets, shard 1c

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-tendon-o0ib5ucwslrqckw20000"></a>
## Mouse tendon

- uid: `o0iB5UCwslRqCKW20000`
- Page: /datasets/visium-spatial-gene-expression-tendon-o0ib5ucwslrqckw20000/
- Technology: Visium
- Organism: mouse
- Tissue: tendon
- Modality: RNA
- Observations (spots): 1,025
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216214
- Publication: https://doi.org/10.1016/j.celrep.2022.111706
- Collections: [geo-gse216214](/collections/md/c.md#geo-gse216214)
- Load: `Catalog().dataset("o0iB5UCwslRqCKW20000").to_sdata()`


<a id="spatial-transcriptomics-breast-dmqsldupjlpcjvng0000"></a>
## Human breast

- uid: `DMQSLduPjLPcjvng0000`
- Page: /datasets/spatial-transcriptomics-breast-dmqsldupjlpcjvng0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 423
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aaf2403
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("DMQSLduPjLPcjvng0000").to_sdata()`


<a id="spatial-transcriptomics-breast-pnfofvpxffu6sktb0000"></a>
## Human breast

- uid: `pNFoFvPxFfu6sktB0000`
- Page: /datasets/spatial-transcriptomics-breast-pnfofvpxffu6sktb0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 360
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://pubmed.ncbi.nlm.nih.gov/34650042/
- Publication: https://doi.org/10.1038/s41467-021-26271-2
- Collections: [doi-10-1038-s41467-021-26271-2](/collections/md/6.md#doi-10-1038-s41467-021-26271-2)
- Load: `Catalog().dataset("pNFoFvPxFfu6sktB0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-dhxrujgtdglrihom0000"></a>
## Mouse spinal cord

- uid: `DHXRUjGTdgLRiHOM0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-dhxrujgtdglrihom0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 367
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("DHXRUjGTdgLRiHOM0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-ttit4g0citskhuie0000"></a>
## Human intestine

- uid: `ttIt4G0cItSKhUIe0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-ttit4g0citskhuie0000/
- Technology: Visium
- Organism: human
- Tissue: intestine
- Condition: colon adenocarcinoma
- Modality: RNA
- Observations (spots): 4,078
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.cell.com/cell/fulltext/S0092-8674(23)01222-9?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867423012229%3Fshowall%3Dtrue#secsectitle0020
- Publication: https://doi.org/10.1016/j.cell.2023.11.006
- Collections: [doi-10-1016-j-cell-2023-11-006](/collections/md/1.md#doi-10-1016-j-cell-2023-11-006)
- Load: `Catalog().dataset("ttIt4G0cItSKhUIe0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-40eeez0ot8hpt2tl0000"></a>
## Human skin of body

- uid: `40eEez0ot8HpT2tL0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-40eeez0ot8hpt2tl0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: lichen planus
- Modality: RNA
- Observations (spots): 744
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("40eEez0ot8HpT2tL0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-l1d6xdvuxbro95kd0000"></a>
## Human brain

- uid: `l1d6xdVuxbRO95kd0000`
- Page: /datasets/visium-spatial-gene-expression-brain-l1d6xdvuxbro95kd0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: medulloblastoma
- Modality: RNA
- Observations (spots): 1,238
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-36071-5
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [doi-10-1038-s41467-023-36071-5](/collections/md/9.md#doi-10-1038-s41467-023-36071-5)
- Load: `Catalog().dataset("l1d6xdVuxbRO95kd0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-9ln3acfpohynlxx70000"></a>
## Human breast

- uid: `9LN3ACFPOHYnLxX70000`
- Page: /datasets/visium-spatial-gene-expression-breast-9ln3acfpohynlxx70000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 901
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210616
- Publication: https://doi.org/10.1158/0008-5472.CAN-22-2682
- Collections: [geo-gse210616](/collections/md/8.md#geo-gse210616)
- Load: `Catalog().dataset("9LN3ACFPOHYnLxX70000").to_sdata()`


<a id="visium-spatial-gene-expression-peritoneum-njhelnll9sjioqda0000"></a>
## Human peritoneum

- uid: `nJheLNll9sJIOqDa0000`
- Page: /datasets/visium-spatial-gene-expression-peritoneum-njhelnll9sjioqda0000/
- Technology: Visium
- Organism: human
- Tissue: peritoneum
- Condition: desmoplastic small round cell tumor
- Modality: RNA
- Observations (spots): 3,697
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE263523
- Publication: https://doi.org/10.1016/j.xcrm.2024.101582
- Collections: [geo-gse267806](/collections/md/4.md#geo-gse267806)
- Load: `Catalog().dataset("nJheLNll9sJIOqDa0000").to_sdata()`


<a id="visium-spatial-gene-expression-entorhinal-cortex-wkhd18gtaqypdbdt0000"></a>
## Human entorhinal cortex

- uid: `Wkhd18gTAqypdbdt0000`
- Page: /datasets/visium-spatial-gene-expression-entorhinal-cortex-wkhd18gtaqypdbdt0000/
- Technology: Visium
- Organism: human
- Tissue: entorhinal cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307990
- Publication: https://doi.org/10.1101/2025.11.20.689483
- Collections: [geo-gse307990](/collections/md/6.md#geo-gse307990)
- Load: `Catalog().dataset("Wkhd18gTAqypdbdt0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-7l6e7qw7exws5r680000"></a>
## Mouse brain

- uid: `7l6e7Qw7ExWS5r680000`
- Page: /datasets/visium-spatial-gene-expression-brain-7l6e7qw7exws5r680000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,221
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282203
- Publication: https://doi.org/10.64898/2026.01.26.701799
- Collections: [geo-gse282203](/collections/md/3.md#geo-gse282203)
- Load: `Catalog().dataset("7l6e7Qw7ExWS5r680000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-ftzkdnjdbyhky7is0000"></a>
## Mouse brain

- uid: `FtzkdNjDByHKy7Is0000`
- Page: /datasets/visium-spatial-gene-expression-brain-ftzkdnjdbyhky7is0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 1,152
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE240715
- Publication: https://doi.org/10.1242/bio.060151
- Collections: [geo-gse240715](/collections/md/4.md#geo-gse240715)
- Load: `Catalog().dataset("FtzkdNjDByHKy7Is0000").to_sdata()`


<a id="visium-spatial-gene-expression-anterior-cingulate-cortex-ntvwa3nyzjusgunc0000"></a>
## Human anterior cingulate cortex

- uid: `NtVwa3NYzJUsgUNc0000`
- Page: /datasets/visium-spatial-gene-expression-anterior-cingulate-cortex-ntvwa3nyzjusgunc0000/
- Technology: Visium
- Organism: human
- Tissue: anterior cingulate cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296789
- Publication: https://doi.org/10.1016/j.celrep.2026.117500
- Collections: [geo-gse296789](/collections/md/0.md#geo-gse296789)
- Load: `Catalog().dataset("NtVwa3NYzJUsgUNc0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-8edq7cuh9asqketz0000"></a>
## Mouse liver

- uid: `8eDQ7cUh9aSqkEtZ0000`
- Page: /datasets/visium-spatial-gene-expression-liver-8edq7cuh9asqketz0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 1,973
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE236424
- Collections: [geo-gse236424](/collections/md/3.md#geo-gse236424)
- Load: `Catalog().dataset("8eDQ7cUh9aSqkEtZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-bk6abzewatdc9a300000"></a>
## Mouse brain

- uid: `BK6ABZEWatDc9A300000`
- Page: /datasets/visium-spatial-gene-expression-brain-bk6abzewatdc9a300000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: traumatic brain injury
- Modality: RNA
- Observations (spots): 2,724
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313407
- Publication: https://doi.org/10.1177/08977151251390528
- Collections: [geo-gse313407](/collections/md/3.md#geo-gse313407)
- Load: `Catalog().dataset("BK6ABZEWatDc9A300000").to_sdata()`


<a id="visium-spatial-gene-expression-pleura-z43yqpqeaxuqnmlu0000"></a>
## Human pleura

- uid: `z43yqpQEAXuqnMlu0000`
- Page: /datasets/visium-spatial-gene-expression-pleura-z43yqpqeaxuqnmlu0000/
- Technology: Visium
- Organism: human
- Tissue: pleura
- Condition: non-small cell lung carcinoma
- Modality: RNA
- Observations (spots): 5,351
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8855718
- Collections: [geo-gse292299](/collections/md/c.md#geo-gse292299)
- Load: `Catalog().dataset("z43yqpQEAXuqnMlu0000").to_sdata()`


<a id="visium-spatial-gene-expression-perianal-skin-txuz4jrne9eprv1l0000"></a>
## Human perianal skin

- uid: `tXuz4jRNE9Eprv1l0000`
- Page: /datasets/visium-spatial-gene-expression-perianal-skin-txuz4jrne9eprv1l0000/
- Technology: Visium
- Organism: human
- Tissue: perianal skin
- Condition: Crohn disease
- Modality: RNA
- Observations (spots): 1,791
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8521500
- Collections: [geo-gse277387](/collections/md/8.md#geo-gse277387)
- Load: `Catalog().dataset("tXuz4jRNE9Eprv1l0000").to_sdata()`


<a id="visium-spatial-gene-expression-bone-tissue-lqb529rrpc5xiocj0000"></a>
## Human bone tissue

- uid: `LqB529rrPc5XIoCj0000`
- Page: /datasets/visium-spatial-gene-expression-bone-tissue-lqb529rrpc5xiocj0000/
- Technology: Visium
- Organism: human
- Tissue: bone tissue
- Condition: osteosarcoma
- Modality: RNA
- Observations (spots): 3,053
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299025
- Publication: https://doi.org/10.3390/cancers17132117
- Collections: [geo-gse299025](/collections/md/7.md#geo-gse299025)
- Load: `Catalog().dataset("LqB529rrPc5XIoCj0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-gizwrikghnpj7xci0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `GIzWRIKgHnPj7XcI0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-gizwrikghnpj7xci0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: major depressive disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("GIzWRIKgHnPj7XcI0000").to_sdata()`


<a id="10x-xenium-skin-of-body-bfx67jt3ppxrpvur0000"></a>
## Human skin of body

- uid: `Bfx67JT3ppxrpVUr0000`
- Page: /datasets/10x-xenium-skin-of-body-bfx67jt3ppxrpvur0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 10,079
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301280
- Load: `Catalog().dataset("Bfx67JT3ppxrpVUr0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-uwxscsmrvqm2dikv0000"></a>
## Mouse liver

- uid: `uwXscSMrVqM2diKV0000`
- Page: /datasets/visium-spatial-gene-expression-liver-uwxscsmrvqm2dikv0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 3,127
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("uwXscSMrVqM2diKV0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-rbvygtvok4yhehsd0000"></a>
## Mouse liver

- uid: `RBvYgtVOk4yheHSD0000`
- Page: /datasets/visium-spatial-gene-expression-liver-rbvygtvok4yhehsd0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 1,762
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE320442
- Collections: [geo-gse320442](/collections/md/7.md#geo-gse320442)
- Load: `Catalog().dataset("RBvYgtVOk4yheHSD0000").to_sdata()`


<a id="10x-xenium-lung-qaiiwbmxivrahgmf0000"></a>
## Human lung

- uid: `qaIiwbmXivraHGMF0000`
- Page: /datasets/10x-xenium-lung-qaiiwbmxivrahgmf0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: lung
- Condition: lung adenocarcinoma
- Modality: RNA
- Observations (cells): 137,993
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334763
- Publication: https://doi.org/10.1126/sciimmunol.aeb6645
- Load: `Catalog().dataset("qaIiwbmXivraHGMF0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-dneruitkjtqf8zsu0000"></a>
## Human kidney

- uid: `dneRUiTKjTqF8ZsU0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-dneruitkjtqf8zsu0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 6,075
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-01-21_21h05m56s
- Load: `Catalog().dataset("dneRUiTKjTqF8ZsU0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-mv2smxicunrplydc0000"></a>
## Macaque basal ganglion

- uid: `Mv2sMXICunRpLydc0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-mv2smxicunrplydc0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 30,531
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("Mv2sMXICunRpLydc0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-s2o7pgdgqjj6cjmp0000"></a>
## Macaque basal ganglion

- uid: `S2O7PgdgqJJ6CJMP0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-s2o7pgdgqjj6cjmp0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 74,716
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("S2O7PgdgqJJ6CJMP0000").to_sdata()`


<a id="mibi-tof-breast-aa94djql6nrefrun0000"></a>
## Human breast

- uid: `aa94DJqL6NREFrUn0000`
- Page: /datasets/mibi-tof-breast-aa94djql6nrefrun0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 1,630
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("aa94DJqL6NREFrUn0000").to_sdata()`