# SpatialData-DB datasets, shard 0f

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-brain-murufcvxjcbstzl20000"></a>
## Mouse brain

- uid: `mUruFcVXJCBsTZL20000`
- Page: /datasets/visium-spatial-gene-expression-brain-murufcvxjcbstzl20000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 4,530
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319409
- Publication: https://doi.org/10.1186/s40478-025-02219-1
- Collections: [geo-gse319409](/collections/md/8.md#geo-gse319409)
- Load: `Catalog().dataset("mUruFcVXJCBsTZL20000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-kam4maj60qgfij4w0000"></a>
## Mouse spinal cord

- uid: `kaM4mAJ60qGfIJ4W0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-kam4maj60qgfij4w0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 303
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("kaM4mAJ60qGfIJ4W0000").to_sdata()`


<a id="visium-spatial-gene-expression-intestine-s4vxr3yuao15nhvg0000"></a>
## Human intestine

- uid: `S4VXR3yUaO15nHvG0000`
- Page: /datasets/visium-spatial-gene-expression-intestine-s4vxr3yuao15nhvg0000/
- Technology: Visium
- Organism: human
- Tissue: intestine
- Condition: colon adenocarcinoma
- Modality: RNA
- Observations (spots): 2,317
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.biorxiv.org/content/10.1101/2023.01.23.525135v2
- Publication: https://doi.org/10.1101/2023.01.23.525135
- Collections: [doi-10-1101-2023-01-23-525135](/collections/md/f.md#doi-10-1101-2023-01-23-525135)
- Load: `Catalog().dataset("S4VXR3yUaO15nHvG0000").to_sdata()`


<a id="visium-spatial-gene-expression-bone-element-rviiwwjljurgevlf0000"></a>
## Mouse bone element

- uid: `RviIwwJLjURgEVlF0000`
- Page: /datasets/visium-spatial-gene-expression-bone-element-rviiwwjljurgevlf0000/
- Technology: Visium
- Organism: mouse
- Tissue: bone element
- Modality: RNA
- Observations (spots): 1,305
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-36071-5
- Publication: https://doi.org/10.1038/s41467-023-36071-5
- Collections: [doi-10-1038-s41467-023-36071-5](/collections/md/9.md#doi-10-1038-s41467-023-36071-5)
- Load: `Catalog().dataset("RviIwwJLjURgEVlF0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-codkvx39kwejmhry0000"></a>
## Mouse heart

- uid: `cODKvx39kWejMHry0000`
- Page: /datasets/visium-spatial-gene-expression-heart-codkvx39kwejmhry0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Condition: ischemia reperfusion injury
- Modality: RNA
- Observations (spots): 1,962
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10203427/
- Publication: https://doi.org/10.3389/fphar.2023.1173649
- Collections: [doi-10-3389-fphar-2023-1173649](/collections/md/3.md#doi-10-3389-fphar-2023-1173649)
- Load: `Catalog().dataset("cODKvx39kWejMHry0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-pqfurdts5lpu686t0000"></a>
## Human skin of body

- uid: `pqFUrdtS5lPu686T0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-pqfurdts5lpu686t0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: lichen planus
- Modality: RNA
- Observations (spots): 450
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("pqFUrdtS5lPu686T0000").to_sdata()`


<a id="visium-spatial-gene-expression-prostate-gland-ks3asykvjyx3odeu0000"></a>
## Human prostate gland

- uid: `kS3AsyKVjyx3oDEu0000`
- Page: /datasets/visium-spatial-gene-expression-prostate-gland-ks3asykvjyx3odeu0000/
- Technology: Visium
- Organism: human
- Tissue: prostate gland
- Condition: prostatic acinar adenocarcinoma
- Modality: RNA
- Observations (spots): 1,964
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-022-05023-2
- Publication: https://doi.org/10.1038/s41586-022-05023-2
- Collections: [doi-10-1038-s41586-022-05023-2](/collections/md/5.md#doi-10-1038-s41586-022-05023-2)
- Load: `Catalog().dataset("kS3AsyKVjyx3oDEu0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-1lehzb5wv60degji0000"></a>
## Human skin of body

- uid: `1Lehzb5WV60DegjI0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-1lehzb5wv60degji0000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: lichen planus
- Modality: RNA
- Observations (spots): 1,117
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-022-35319-w
- Publication: https://doi.org/10.1038/s41467-022-35319-w
- Collections: [doi-10-1038-s41467-022-35319-w](/collections/md/f.md#doi-10-1038-s41467-022-35319-w)
- Load: `Catalog().dataset("1Lehzb5WV60DegjI0000").to_sdata()`


<a id="visium-spatial-gene-expression-uterine-cervix-jgcramtoluyc0nux0000"></a>
## Human uterine cervix

- uid: `jgcrAMTOLuyC0nUx0000`
- Page: /datasets/visium-spatial-gene-expression-uterine-cervix-jgcramtoluyc0nux0000/
- Technology: Visium
- Organism: human
- Tissue: uterine cervix
- Condition: cervical carcinoma
- Modality: RNA
- Observations (spots): 1,757
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10040725/
- Publication: https://doi.org/10.1002/ctm2.1219
- Collections: [doi-10-1002-ctm2-1219](/collections/md/9.md#doi-10-1002-ctm2-1219)
- Load: `Catalog().dataset("jgcrAMTOLuyC0nUx0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-gahuikaiqrp7cad20000"></a>
## Human skin of body

- uid: `gAhuIKaIqRp7caD20000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-gahuikaiqrp7cad20000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: skin squamous cell carcinoma
- Modality: RNA
- Observations (spots): 2,496
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7391009/
- Publication: https://doi.org/10.1016/j.cell.2020.05.039
- Collections: [doi-10-1016-j-cell-2020-05-039](/collections/md/0.md#doi-10-1016-j-cell-2020-05-039)
- Load: `Catalog().dataset("gAhuIKaIqRp7caD20000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-cw7ovjqvam8ljx1o0000"></a>
## Human brain

- uid: `cW7ovJQVAm8lJX1o0000`
- Page: /datasets/visium-spatial-gene-expression-brain-cw7ovjqvam8ljx1o0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: brain glioma
- Modality: RNA
- Observations (spots): 4,891
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242352
- Publication: https://doi.org/10.1038/s41467-025-59805-z
- Collections: [geo-gse242352](/collections/md/d.md#geo-gse242352)
- Load: `Catalog().dataset("cW7ovJQVAm8lJX1o0000").to_sdata()`


<a id="phenocycler-fusion-tonsil-efldlbq4e6qbcl4d0000"></a>
## Human tonsil

- uid: `Efldlbq4e6qbCL4d0000`
- Page: /datasets/phenocycler-fusion-tonsil-efldlbq4e6qbcl4d0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: tonsil
- Modality: protein
- Observations (cells): 315,579
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2491
- Collections: [bia-s-biad2491](/collections/md/4.md#bia-s-biad2491)
- Load: `Catalog().dataset("Efldlbq4e6qbCL4d0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-zpd4a4bt7jz9jclv0000"></a>
## Human basal ganglion

- uid: `zPd4a4bt7jz9jclv0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-zpd4a4bt7jz9jclv0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 54,292
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-h22-30-001-bg](/collections/md/b.md#abc-hmba-merscope-h22-30-001-bg)
- Load: `Catalog().dataset("zPd4a4bt7jz9jclv0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-9nemekdceaz6b1gm0000"></a>
## Human ovary

- uid: `9nEmeKDCEAZ6B1GM0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-9nemekdceaz6b1gm0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 4,038
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8207503
- Collections: [geo-gse263920](/collections/md/8.md#geo-gse263920)
- Load: `Catalog().dataset("9nEmeKDCEAZ6B1GM0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-eghbacnc3hddcp4p0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `EGhbAcnc3hDDcP4P0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-eghbacnc3hddcp4p0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: major depressive disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("EGhbAcnc3hDDcP4P0000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-wgewy0eimuexgxeb0000"></a>
## Human pancreas

- uid: `wGEwy0eiMuExGxeb0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-wgewy0eimuexgxeb0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,672
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE282302
- Publication: https://doi.org/10.1016/j.celrep.2025.116827
- Collections: [geo-gse282302](/collections/md/d.md#geo-gse282302)
- Load: `Catalog().dataset("wGEwy0eiMuExGxeb0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-va7u3vvb1msgkcbl0000"></a>
## Human liver

- uid: `va7u3VVB1MSgkCBl0000`
- Page: /datasets/visium-spatial-gene-expression-liver-va7u3vvb1msgkcbl0000/
- Technology: Visium
- Organism: human
- Tissue: liver
- Condition: pancreatic ductal adenocarcinoma
- Modality: RNA
- Observations (spots): 2,686
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8452880
- Collections: [geo-gse274557](/collections/md/1.md#geo-gse274557)
- Load: `Catalog().dataset("va7u3VVB1MSgkCBl0000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-rhcfqyzjiesseufa0000"></a>
## Human breast

- uid: `RhCfQyzjIEsSEufa0000`
- Page: /datasets/visium-spatial-gene-expression-breast-rhcfqyzjiesseufa0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: breast cancer
- Modality: RNA
- Observations (spots): 849
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7777523
- Collections: [geo-gse243022](/collections/md/4.md#geo-gse243022)
- Load: `Catalog().dataset("RhCfQyzjIEsSEufa0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-zccvdkq90pjwsyat0000"></a>
## Human kidney

- uid: `ZCCvdkQ90PJwSYat0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-zccvdkq90pjwsyat0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 41,625
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2019-04-13_00h14m09s
- Load: `Catalog().dataset("ZCCvdkQ90PJwSYat0000").to_sdata()`


<a id="mibi-tof-breast-99kbatmtlpnqaqmq0000"></a>
## Human breast

- uid: `99KbAtmTlPnqAQmQ0000`
- Page: /datasets/mibi-tof-breast-99kbatmtlpnqaqmq0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,493
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("99KbAtmTlPnqAQmQ0000").to_sdata()`


<a id="stereo-seq-prefrontal-cortex-z9wpq9vtilufnl830000"></a>
## Human prefrontal cortex

- uid: `z9wPq9VTILUFNl830000`
- Page: /datasets/stereo-seq-prefrontal-cortex-z9wpq9vtilufnl830000/
- Technology: Stereo-seq
- Organism: human
- Tissue: prefrontal cortex
- Condition: Alzheimer disease
- Modality: RNA
- Observations: 72,490
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269906
- Collections: [geo-gse269906](/collections/md/5.md#geo-gse269906)
- Load: `Catalog().dataset("z9wPq9VTILUFNl830000").to_sdata()`


<a id="vizgen-merscope-unknown-fggxurmws6elvm740000"></a>
## Human unknown

- uid: `FgGXURMWs6ELvm740000`
- Page: /datasets/vizgen-merscope-unknown-fggxurmws6elvm740000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: unknown
- Condition: cancer
- Modality: RNA
- Observations (cells): 9,776
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308147
- Publication: https://doi.org/10.1038/s41467-025-64990-y
- Collections: [geo-gsm9238732](/collections/md/9.md#geo-gsm9238732)
- Load: `Catalog().dataset("FgGXURMWs6ELvm740000").to_sdata()`


<a id="vizgen-merscope-unknown-qkudzolq8uzxm4wb0000"></a>
## Human unknown

- uid: `qkudZoLq8uZXM4Wb0000`
- Page: /datasets/vizgen-merscope-unknown-qkudzolq8uzxm4wb0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: unknown
- Modality: RNA
- Observations (cells): 24,946
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308147
- Publication: https://doi.org/10.1038/s41467-025-64990-y
- Collections: [geo-gsm9238734](/collections/md/8.md#geo-gsm9238734)
- Load: `Catalog().dataset("qkudZoLq8uZXM4Wb0000").to_sdata()`


<a id="mibi-tof-breast-y3mwehtd44lpnbix0000"></a>
## Human breast

- uid: `Y3mweHtD44LPnbiX0000`
- Page: /datasets/mibi-tof-breast-y3mwehtd44lpnbix0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,868
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("Y3mweHtD44LPnbiX0000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-2esfsjwrg0pj7vra0000"></a>
## Human skin of body

- uid: `2eSfSjWRg0PJ7vRA0000`
- Page: /datasets/vizgen-merscope-skin-of-body-2esfsjwrg0pj7vra0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 12,486
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("2eSfSjWRg0PJ7vRA0000").to_sdata()`


<a id="10x-xenium-bone-marrow-lse0gcszptmorift0000"></a>
## Human bone marrow

- uid: `lse0GCSzptMoRifT0000`
- Page: /datasets/10x-xenium-bone-marrow-lse0gcszptmorift0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: bone marrow
- Condition: plasma cell myeloma
- Modality: RNA
- Observations (cells): 68,334
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299207
- Publication: https://doi.org/10.1182/blood.2025028896
- Load: `Catalog().dataset("lse0GCSzptMoRifT0000").to_sdata()`