# SpatialData-DB datasets, shard 0a

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-hd-breast-0zang78wueft49cl0001"></a>
## Human breast

- uid: `0zang78WuefT49cL0001`
- Page: /datasets/visium-hd-breast-0zang78wueft49cl0001/
- Technology: Visium HD
- Organism: human
- Tissue: breast
- Condition: breast cancer
- Modality: RNA
- Observations (bins): 1,466,755
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/visium-hd-cytassist-11mm-human-breast-cancer
- Load: `Catalog().dataset("0zang78WuefT49cL0001").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-b29nr7ts0svorisv0000"></a>
## Human pancreas

- uid: `B29NR7Ts0SVORISV0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-b29nr7ts0svorisv0000/
- Technology: Visium
- Organism: human
- Tissue: pancreas
- Condition: pancreatic adenocarcinoma
- Modality: RNA
- Observations (spots): 3,794
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41467-023-40314-w
- Publication: https://doi.org/10.1038/s41467-023-40314-w
- Collections: [doi-10-1038-s41467-023-40314-w](/collections/md/4.md#doi-10-1038-s41467-023-40314-w)
- Load: `Catalog().dataset("B29NR7Ts0SVORISV0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-fanbonbmuxuvb9m50000"></a>
## Mouse spinal cord

- uid: `FaNboNbMuXuvB9M50000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-fanbonbmuxuvb9m50000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 380
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("FaNboNbMuXuvB9M50000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-kkguu2ikar2pugut0000"></a>
## Mouse spinal cord

- uid: `KKguu2IKaR2PUGUT0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-kkguu2ikar2pugut0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 273
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("KKguu2IKaR2PUGUT0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-tnn05casdtpugq5b0000"></a>
## Mouse spinal cord

- uid: `TNN05CaSdtpuGQ5B0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-tnn05casdtpugq5b0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 301
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("TNN05CaSdtpuGQ5B0000").to_sdata()`


<a id="10x-xenium-kidney-cfj4xlrxnr43gbnr0000"></a>
## Mouse kidney

- uid: `CFj4xLRXNr43gBnR0000`
- Page: /datasets/10x-xenium-kidney-cfj4xlrxnr43gbnr0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: kidney
- Modality: RNA
- Observations (cells): 304,788
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9428105
- Collections: [geo-gse315435](/collections/md/f.md#geo-gse315435)
- Load: `Catalog().dataset("CFj4xLRXNr43gBnR0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-gyjdjznp863bio7r0000"></a>
## Mouse skin of body

- uid: `gyjDjZNp863bio7r0000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-gyjdjznp863bio7r0000/
- Technology: Visium
- Organism: mouse
- Tissue: skin of body
- Condition: skin neoplasm
- Modality: RNA
- Observations (spots): 1,396
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE235325
- Publication: https://doi.org/10.1038/s41586-024-07663-y
- Collections: [geo-gse235325](/collections/md/7.md#geo-gse235325)
- Load: `Catalog().dataset("gyjDjZNp863bio7r0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-bmoownf15h335jfb0000"></a>
## Rat brain

- uid: `bMoowNF15H335JFB0000`
- Page: /datasets/visium-spatial-gene-expression-brain-bmoownf15h335jfb0000/
- Technology: Visium
- Organism: rat
- Tissue: brain
- Condition: Alzheimer disease
- Modality: RNA
- Observations (spots): 7,451
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305314
- Publication: https://doi.org/10.1038/s42003-025-08959-z
- Collections: [geo-gse305314](/collections/md/2.md#geo-gse305314)
- Load: `Catalog().dataset("bMoowNF15H335JFB0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-oziqe0fofm9m4cg30000"></a>
## Mouse brain

- uid: `oZiqe0fofm9m4Cg30000`
- Page: /datasets/visium-spatial-gene-expression-brain-oziqe0fofm9m4cg30000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Condition: Alzheimer disease
- Modality: RNA
- Observations (spots): 2,775
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203424
- Publication: https://doi.org/10.1002/alz.12821
- Collections: [geo-gse203424](/collections/md/7.md#geo-gse203424)
- Load: `Catalog().dataset("oZiqe0fofm9m4Cg30000").to_sdata()`


<a id="visium-spatial-gene-expression-lung-idwuwzhpidhyb0iv0001"></a>
## Human lung

- uid: `IDwuWZhpIDhYb0iv0001`
- Page: /datasets/visium-spatial-gene-expression-lung-idwuwzhpidhyb0iv0001/
- Technology: Visium
- Organism: human
- Tissue: lung
- Modality: RNA
- Observations (spots): 2,599
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318039
- Publication: https://doi.org/10.1186/s40364-026-00960-w
- Collections: [geo-gse318039](/collections/md/6.md#geo-gse318039)
- Load: `Catalog().dataset("IDwuWZhpIDhYb0iv0001").to_sdata()`


<a id="10x-xenium-small-intestine-nyo8qnduqklzcyer0000"></a>
## Mouse small intestine

- uid: `NYO8qNduQkLzCYEr0000`
- Page: /datasets/10x-xenium-small-intestine-nyo8qnduqklzcyer0000/
- Technology: 10x Xenium
- Organism: mouse
- Tissue: small intestine
- Modality: RNA
- Observations (cells): 365,769
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8964407
- Publication: https://doi.org/10.1038/s41586-026-10531-6
- Collections: [geo-gse296053](/collections/md/8.md#geo-gse296053)
- Load: `Catalog().dataset("NYO8qNduQkLzCYEr0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-b02kl214hin4z6ao0000"></a>
## Mouse brain

- uid: `b02kl214Hin4Z6Ao0000`
- Page: /datasets/visium-spatial-gene-expression-brain-b02kl214hin4z6ao0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 3,051
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("b02kl214Hin4Z6Ao0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-sbasglxwkouczbap0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `SbaSGlxwkoucZbAP0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-sbasglxwkouczbap0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: major depressive disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("SbaSGlxwkoucZbAP0000").to_sdata()`


<a id="visium-spatial-gene-expression-ovary-s9ohp58eglwyvnch0000"></a>
## Human ovary

- uid: `s9ohp58eglWYVNch0000`
- Page: /datasets/visium-spatial-gene-expression-ovary-s9ohp58eglwyvnch0000/
- Technology: Visium
- Organism: human
- Tissue: ovary
- Condition: ovarian serous adenocarcinoma
- Modality: RNA
- Observations (spots): 3,509
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8207499
- Collections: [geo-gse263920](/collections/md/8.md#geo-gse263920)
- Load: `Catalog().dataset("s9ohp58eglWYVNch0000").to_sdata()`


<a id="visium-spatial-gene-expression-heart-ymlorasrfxpn63tz0000"></a>
## Mouse heart

- uid: `yMlORASrFXPN63TZ0000`
- Page: /datasets/visium-spatial-gene-expression-heart-ymlorasrfxpn63tz0000/
- Technology: Visium
- Organism: mouse
- Tissue: heart
- Condition: myocardial infarction
- Modality: RNA
- Observations (spots): 2,461
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM6613085
- Collections: [geo-gse214611](/collections/md/a.md#geo-gse214611)
- Load: `Catalog().dataset("yMlORASrFXPN63TZ0000").to_sdata()`


<a id="visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p9gdllbzkdwzaowh0000"></a>
## Human dorsolateral prefrontal cortex

- uid: `P9gdLLbZKdWzAowh0000`
- Page: /datasets/visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p9gdllbzkdwzaowh0000/
- Technology: Visium
- Organism: human
- Tissue: dorsolateral prefrontal cortex
- Condition: major depressive disorder
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974
- Collections: [geo-gse333974](/collections/md/c.md#geo-gse333974)
- Load: `Catalog().dataset("P9gdLLbZKdWzAowh0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-sybl962rkuzluhqy0000"></a>
## Mouse brain

- uid: `sybl962RKUzluHQy0000`
- Page: /datasets/visium-spatial-gene-expression-brain-sybl962rkuzluhqy0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,451
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("sybl962RKUzluHQy0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-0f7ft658lu9q6t7h0000"></a>
## Mouse liver

- uid: `0f7FT658lU9q6T7h0000`
- Page: /datasets/visium-spatial-gene-expression-liver-0f7ft658lu9q6t7h0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 1,790
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM8599602
- Collections: [geo-gse280515](/collections/md/7.md#geo-gse280515)
- Load: `Catalog().dataset("0f7FT658lU9q6T7h0000").to_sdata()`


<a id="visium-spatial-gene-expression-entorhinal-cortex-qma7jka95ejhvqsy0000"></a>
## Mouse entorhinal cortex

- uid: `QMA7jKa95ejhvQSY0000`
- Page: /datasets/visium-spatial-gene-expression-entorhinal-cortex-qma7jka95ejhvqsy0000/
- Technology: Visium
- Organism: mouse
- Tissue: entorhinal cortex
- Modality: RNA
- Observations (spots): 2,678
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347650
- Collections: [geo-gse347650](/collections/md/7.md#geo-gse347650)
- Load: `Catalog().dataset("QMA7jKa95ejhvQSY0000").to_sdata()`


<a id="merfish-brain-izvw805biv5r2wh50000"></a>
## Mouse brain

- uid: `Izvw805bIV5r2Wh50000`
- Page: /datasets/merfish-brain-izvw805biv5r2wh50000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 32,528
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-4.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-4](/collections/md/4.md#abc-zhuang-abca-4)
- Load: `Catalog().dataset("Izvw805bIV5r2Wh50000").to_sdata()`


<a id="merfish-brain-zcshs8hrtt5yzbni0000"></a>
## Mouse brain

- uid: `zCshS8HrTT5YzbnI0000`
- Page: /datasets/merfish-brain-zcshs8hrtt5yzbni0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 25,396
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("zCshS8HrTT5YzbnI0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-liver-ia0aajciwzjzh7zj0000"></a>
## Mouse liver

- uid: `iA0AAjcIwZJzH7zJ0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-liver-ia0aajciwzjzh7zj0000/
- Technology: MALDI mass spectrometry imaging
- Organism: mouse
- Tissue: liver
- Modality: Metabolomics
- Observations: 10,000
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-04-14_11h15m05s
- Publication: https://doi.org/10.1038/s42255-024-01118-4
- Load: `Catalog().dataset("iA0AAjcIwZJzH7zJ0000").to_sdata()`


<a id="mibi-tof-breast-nychp9w92ondhbsr0000"></a>
## Human breast

- uid: `nychP9W92onDhBSr0000`
- Page: /datasets/mibi-tof-breast-nychp9w92ondhbsr0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,457
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("nychP9W92onDhBSr0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-1unamhnjwcntb9ud0000"></a>
## Human kidney

- uid: `1UnaMhnjWcnTB9Ud0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-1unamhnjwcntb9ud0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 5,952
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2023-06-26_22h44m44s
- Load: `Catalog().dataset("1UnaMhnjWcnTB9Ud0000").to_sdata()`


<a id="mibi-tof-breast-nj3gcvuritm0nssv0000"></a>
## Human breast

- uid: `nJ3GcVuRitM0nSsV0000`
- Page: /datasets/mibi-tof-breast-nj3gcvuritm0nssv0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,090
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("nJ3GcVuRitM0nSsV0000").to_sdata()`


<a id="vizgen-merscope-skin-of-body-ejjy1k9dfiearkui0000"></a>
## Human skin of body

- uid: `Ejjy1K9dFiEaRKuI0000`
- Page: /datasets/vizgen-merscope-skin-of-body-ejjy1k9dfiearkui0000/
- Technology: Vizgen MERSCOPE
- Organism: human
- Tissue: skin of body
- Modality: RNA
- Observations (cells): 9,568
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2376
- Publication: https://doi.org/10.1038/s41588-026-02552-8
- Collections: [bia-s-biad2376](/collections/md/f.md#bia-s-biad2376)
- Load: `Catalog().dataset("Ejjy1K9dFiEaRKuI0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-lqqu34tlbfmogaq70000"></a>
## Human kidney

- uid: `lQqU34TLbfMoGaQ70000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-lqqu34tlbfmogaq70000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 5,929
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2022-01-31_21h56m23s
- Publication: https://doi.org/10.1681/asn.0000000000000393
- Load: `Catalog().dataset("lQqU34TLbfMoGaQ70000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-q9zy27o7zyyu2h5a0000"></a>
## Human lymph node

- uid: `q9zy27O7ZYyU2H5A0000`
- Page: /datasets/phenocycler-fusion-lymph-node-q9zy27o7zyyu2h5a0000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Modality: protein
- Observations (cells): 11,666
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("q9zy27O7ZYyU2H5A0000").to_sdata()`


<a id="phenocycler-fusion-lymph-node-x243nrcjjeoaf1s60000"></a>
## Human lymph node

- uid: `X243NrCjJeoAf1s60000`
- Page: /datasets/phenocycler-fusion-lymph-node-x243nrcjjeoaf1s60000/
- Technology: PhenoCycler-Fusion
- Organism: human
- Tissue: lymph node
- Condition: primary mediastinal large B-cell lymphoma
- Modality: protein
- Observations (cells): 8,023
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD2100
- Publication: https://doi.org/10.1101/2025.04.29.651202
- Collections: [bia-s-biad2100](/collections/md/a.md#bia-s-biad2100)
- Load: `Catalog().dataset("X243NrCjJeoAf1s60000").to_sdata()`


<a id="mibi-tof-breast-y6ra1nidzpbzizut0000"></a>
## Human breast

- uid: `y6ra1NidZpBzIZUt0000`
- Page: /datasets/mibi-tof-breast-y6ra1nidzpbzizut0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 3,823
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("y6ra1NidZpBzIZUt0000").to_sdata()`