# SpatialData-DB datasets, shard 06

Generated from catalog release catalog-2026-11-01. Each dataset has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="visium-spatial-gene-expression-brain-rmaeij5vkfyyb66t0000"></a>
## Mouse brain

- uid: `rmAeiJ5VKFYYb66t0000`
- Page: /datasets/visium-spatial-gene-expression-brain-rmaeij5vkfyyb66t0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,702
- Licence: CC BY 4.0
- Source: https://www.10xgenomics.com/datasets/mouse-brain-section-coronal-1-standard-1-1-0
- Load: `Catalog().dataset("rmAeiJ5VKFYYb66t0000").to_sdata()`


<a id="spatial-transcriptomics-spinal-cord-r8emknxnxnhkjgge0000"></a>
## Mouse spinal cord

- uid: `r8emknXnxnhKJGge0000`
- Page: /datasets/spatial-transcriptomics-spinal-cord-r8emknxnxnhkjgge0000/
- Technology: spatial transcriptomics
- Organism: mouse
- Tissue: spinal cord
- Condition: amyotrophic lateral sclerosis
- Modality: RNA
- Observations (spots): 57
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aav9776?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
- Publication: https://doi.org/10.1126/science.aav9776
- Collections: [doi-10-1126-science-aav9776](/collections/md/1.md#doi-10-1126-science-aav9776)
- Load: `Catalog().dataset("r8emknXnxnhKJGge0000").to_sdata()`


<a id="spatial-transcriptomics-breast-uiqxjzsgf2vnw4jp0000"></a>
## Human breast

- uid: `UiQxjZSGf2VnW4jP0000`
- Page: /datasets/spatial-transcriptomics-breast-uiqxjzsgf2vnw4jp0000/
- Technology: spatial transcriptomics
- Organism: human
- Tissue: breast
- Condition: invasive ductal breast carcinoma
- Modality: RNA
- Observations (spots): 587
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.science.org/doi/10.1126/science.aaf2403
- Publication: https://doi.org/10.1126/science.aaf2403
- Collections: [doi-10-1126-science-aaf2403](/collections/md/4.md#doi-10-1126-science-aaf2403)
- Load: `Catalog().dataset("UiQxjZSGf2VnW4jP0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-r39duszohn56tang0000"></a>
## Human brain

- uid: `R39dUszohN56TANg0000`
- Page: /datasets/visium-spatial-gene-expression-brain-r39duszohn56tang0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: ependymoma
- Modality: RNA
- Observations (spots): 1,616
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://academic.oup.com/neuro-oncology/article/24/Supplement_1/i45/6600572
- Publication: https://doi.org/10.1093/neuonc/noac079.165
- Collections: [doi-10-1093-neuonc-noac079-165](/collections/md/6.md#doi-10-1093-neuonc-noac079-165)
- Load: `Catalog().dataset("R39dUszohN56TANg0000").to_sdata()`


<a id="visium-spatial-gene-expression-liver-koccep2mimsg0jwa0000"></a>
## Mouse liver

- uid: `KoCCEp2MImSg0jWA0000`
- Page: /datasets/visium-spatial-gene-expression-liver-koccep2mimsg0jwa0000/
- Technology: Visium
- Organism: mouse
- Tissue: liver
- Modality: RNA
- Observations (spots): 4,992
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.nature.com/articles/s41586-024-07376-2
- Publication: https://doi.org/10.1038/s41586-024-07376-2
- Collections: [doi-10-1038-s41586-024-07376-2](/collections/md/7.md#doi-10-1038-s41586-024-07376-2)
- Load: `Catalog().dataset("KoCCEp2MImSg0jWA0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-ndlvhxq2xduawgex0000"></a>
## Mouse brain

- uid: `nDlvhxQ2xdUAwgEx0000`
- Page: /datasets/visium-spatial-gene-expression-brain-ndlvhxq2xduawgex0000/
- Technology: Visium
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (spots): 2,889
- Licence: CC BY-NC-SA 4.0 (non-commercial)
- Source: https://www.sciencedirect.com/science/article/abs/pii/S0889159123004166#:~:text=These%20data%20suggest%20binge%20drinking,heightened%20neuroinflammatory%20responses%20to%20ethanol.
- Publication: https://doi.org/10.1016/j.bbi.2023.12.034
- Collections: [doi-10-1016-j-bbi-2023-12-034](/collections/md/7.md#doi-10-1016-j-bbi-2023-12-034)
- Load: `Catalog().dataset("nDlvhxQ2xdUAwgEx0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-cng4vwtznpggkwr50000"></a>
## Human skin of body

- uid: `CNG4vwTZNPGGkwr50000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-cng4vwtznpggkwr50000/
- Technology: Visium
- Organism: human
- Tissue: skin of body
- Condition: skin squamous cell carcinoma
- Modality: RNA
- Observations (spots): 3,650
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144239
- Publication: https://doi.org/10.1016/j.cell.2020.05.039
- Collections: [geo-gse144239](/collections/md/0.md#geo-gse144239)
- Load: `Catalog().dataset("CNG4vwTZNPGGkwr50000").to_sdata()`


<a id="visium-spatial-gene-expression-breast-hlk0uwhcr1mogn5i0000"></a>
## Human breast

- uid: `hLK0UwHcr1mOGn5i0000`
- Page: /datasets/visium-spatial-gene-expression-breast-hlk0uwhcr1mogn5i0000/
- Technology: Visium
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: RNA
- Observations (spots): 1,266
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210616
- Publication: https://doi.org/10.1158/0008-5472.CAN-22-2682
- Collections: [geo-gse210616](/collections/md/8.md#geo-gse210616)
- Load: `Catalog().dataset("hLK0UwHcr1mOGn5i0000").to_sdata()`


<a id="visium-spatial-gene-expression-anterior-cingulate-cortex-n8km6ht6vqgpvqsb0000"></a>
## Human anterior cingulate cortex

- uid: `N8Km6HT6vqGPvqsB0000`
- Page: /datasets/visium-spatial-gene-expression-anterior-cingulate-cortex-n8km6ht6vqgpvqsb0000/
- Technology: Visium
- Organism: human
- Tissue: anterior cingulate cortex
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE296789
- Publication: https://doi.org/10.1016/j.celrep.2026.117500
- Collections: [geo-gse296789](/collections/md/0.md#geo-gse296789)
- Load: `Catalog().dataset("N8Km6HT6vqGPvqsB0000").to_sdata()`


<a id="visium-spatial-gene-expression-skin-of-body-uafvolysrwkenwu40000"></a>
## Mouse skin of body

- uid: `UAfVOLYsRWKenWu40000`
- Page: /datasets/visium-spatial-gene-expression-skin-of-body-uafvolysrwkenwu40000/
- Technology: Visium
- Organism: mouse
- Tissue: skin of body
- Modality: RNA
- Observations (spots): 4,992
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE245582
- Publication: https://doi.org/10.1158/0008-5472.CAN-24-0690
- Collections: [geo-gse245582](/collections/md/8.md#geo-gse245582)
- Load: `Catalog().dataset("UAfVOLYsRWKenWu40000").to_sdata()`


<a id="visium-spatial-gene-expression-pancreas-itqdlevmbniiwzen0000"></a>
## Mouse pancreas

- uid: `ItQdLEvmbniIWZeN0000`
- Page: /datasets/visium-spatial-gene-expression-pancreas-itqdlevmbniiwzen0000/
- Technology: Visium
- Organism: mouse
- Tissue: pancreas
- Modality: RNA
- Observations (spots): 788
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249121
- Publication: https://doi.org/10.1186/s13073-025-01452-6
- Collections: [geo-gse249121](/collections/md/d.md#geo-gse249121)
- Load: `Catalog().dataset("ItQdLEvmbniIWZeN0000").to_sdata()`


<a id="visium-spatial-gene-expression-kidney-jemkpllvhobfvxbn0000"></a>
## Mouse kidney

- uid: `jemKplLVhobfVxbn0000`
- Page: /datasets/visium-spatial-gene-expression-kidney-jemkpllvhobfvxbn0000/
- Technology: Visium
- Organism: mouse
- Tissue: kidney
- Modality: RNA
- Observations (spots): 3,722
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Collections: [geo-gse283283](/collections/md/4.md#geo-gse283283)
- Load: `Catalog().dataset("jemKplLVhobfVxbn0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-white-matter-l01eagvuttawordy0000"></a>
## Human brain white matter

- uid: `l01eagVuTtAWORDy0000`
- Page: /datasets/visium-spatial-gene-expression-brain-white-matter-l01eagvuttawordy0000/
- Technology: Visium
- Organism: human
- Tissue: brain white matter
- Condition: multiple sclerosis
- Modality: RNA
- Observations (spots): 2,195
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE277435
- Publication: https://doi.org/10.1038/s41467-025-63371-9
- Collections: [geo-gse277435](/collections/md/0.md#geo-gse277435)
- Load: `Catalog().dataset("l01eagVuTtAWORDy0000").to_sdata()`


<a id="visium-spatial-gene-expression-brain-rkye9wx00papgmnf0000"></a>
## Human brain

- uid: `rkye9WX00PAPgMnf0000`
- Page: /datasets/visium-spatial-gene-expression-brain-rkye9wx00papgmnf0000/
- Technology: Visium
- Organism: human
- Tissue: brain
- Condition: glioblastoma
- Modality: RNA
- Observations (spots): 2,850
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM9497625
- Collections: [geo-gse318562](/collections/md/3.md#geo-gse318562)
- Load: `Catalog().dataset("rkye9WX00PAPgMnf0000").to_sdata()`


<a id="10x-xenium-corpus-striatum-hkbl8nmcuugu5pyn0000"></a>
## Human corpus striatum

- uid: `hkBl8nmCUUgu5pYN0000`
- Page: /datasets/10x-xenium-corpus-striatum-hkbl8nmcuugu5pyn0000/
- Technology: 10x Xenium
- Organism: human
- Tissue: corpus striatum
- Modality: RNA
- Observations (cells): 35,125
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE343854
- Load: `Catalog().dataset("hkBl8nmCUUgu5pYN0000").to_sdata()`


<a id="vizgen-merscope-basal-ganglion-qnatw9z4iq7htoye0000"></a>
## Macaque basal ganglion

- uid: `qnATW9Z4iq7HTOYe0000`
- Page: /datasets/vizgen-merscope-basal-ganglion-qnatw9z4iq7htoye0000/
- Technology: Vizgen MERSCOPE
- Organism: macaque
- Tissue: basal ganglion
- Modality: RNA
- Observations (cells): 107,396
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/HMBA-Spatial-BG.html
- Publication: https://doi.org/10.1101/2025.11.22.688128
- Collections: [abc-hmba-merscope-qm23-50-001-bg](/collections/md/d.md#abc-hmba-merscope-qm23-50-001-bg)
- Load: `Catalog().dataset("qnATW9Z4iq7HTOYe0000").to_sdata()`


<a id="maldi-mass-spectrometry-imaging-kidney-iuvwqntsqsrj6e4p0000"></a>
## Human kidney

- uid: `IuVwQnTsQsRj6E4P0000`
- Page: /datasets/maldi-mass-spectrometry-imaging-kidney-iuvwqntsqsrj6e4p0000/
- Technology: MALDI mass spectrometry imaging
- Organism: human
- Tissue: kidney
- Modality: Metabolomics
- Observations: 29,237
- Licence: CC BY 4.0
- Source: https://metaspace2020.org/dataset/2021-07-14_18h48m41s
- Load: `Catalog().dataset("IuVwQnTsQsRj6E4P0000").to_sdata()`


<a id="mibi-tof-breast-kmmshf9jidfjhews0000"></a>
## Human breast

- uid: `kmMShF9jIdfJHEWs0000`
- Page: /datasets/mibi-tof-breast-kmmshf9jidfjhews0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 4,663
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("kmMShF9jIdfJHEWs0000").to_sdata()`


<a id="mibi-tof-breast-qniqqnfqtog2uxe70000"></a>
## Human breast

- uid: `QniQqnFqtOG2UxE70000`
- Page: /datasets/mibi-tof-breast-qniqqnfqtog2uxe70000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,201
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("QniQqnFqtOG2UxE70000").to_sdata()`


<a id="mibi-tof-lymph-node-devebu5nrgex8erb0000"></a>
## Human lymph node

- uid: `dEvEbu5NrGEX8ErB0000`
- Page: /datasets/mibi-tof-lymph-node-devebu5nrgex8erb0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: lymph node
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 2,257
- Licence: CC0 1.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1288
- Collections: [bia-s-biad1288](/collections/md/b.md#bia-s-biad1288)
- Load: `Catalog().dataset("dEvEbu5NrGEX8ErB0000").to_sdata()`


<a id="vizgen-merscope-brain-9k8ebet7wguyp2tm0000"></a>
## Mouse brain

- uid: `9k8eBET7wGuyP2tM0000`
- Page: /datasets/vizgen-merscope-brain-9k8ebet7wguyp2tm0000/
- Technology: Vizgen MERSCOPE
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 393,954
- Licence: NCBI GEO policy
- Source: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269617
- Load: `Catalog().dataset("9k8eBET7wGuyP2tM0000").to_sdata()`


<a id="mibi-tof-breast-vges1ru3htzex9cc0000"></a>
## Human breast

- uid: `vges1RU3HTZex9Cc0000`
- Page: /datasets/mibi-tof-breast-vges1ru3htzex9cc0000/
- Technology: MIBI-TOF
- Organism: human
- Tissue: breast
- Condition: triple-negative breast carcinoma
- Modality: protein
- Observations: 5,236
- Licence: CC BY 4.0
- Source: https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD1507
- Collections: [bia-s-biad1507](/collections/md/b.md#bia-s-biad1507)
- Load: `Catalog().dataset("vges1RU3HTZex9Cc0000").to_sdata()`


<a id="merfish-brain-zpffws0kbmtm8qqy0000"></a>
## Mouse brain

- uid: `zpFfWS0KBmtM8QqY0000`
- Page: /datasets/merfish-brain-zpffws0kbmtm8qqy0000/
- Technology: MERFISH
- Organism: mouse
- Tissue: brain
- Modality: RNA
- Observations (cells): 25,528
- Licence: Allen Institute Terms of Use (non-commercial)
- Source: https://alleninstitute.github.io/abc_atlas_access/descriptions/Zhuang-ABCA-1.html
- Publication: https://doi.org/10.1038/s41586-023-06808-9
- Collections: [abc-zhuang-abca-1](/collections/md/5.md#abc-zhuang-abca-1)
- Load: `Catalog().dataset("zpFfWS0KBmtM8QqY0000").to_sdata()`