CosMx SMI
Human skin of body
GSM9853380
silver Interactive viewer mycosis fungoides No linked publication
print(sdata)
SpatialData object
├── Shapes
│ └── 'cell_circles': GeoDataFrame shape: (2820, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2820, 1000)
with coordinate systems:
▸ 'global', with elements:
cell_circles (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("dnfCdfPkBdvqqqkQ0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("dnfCdfPkBdvqqqkQ") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download dnfCdfPkBdvqqqkQ0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/dnfCdfPkBdvqqqkQ
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid dnfCdfPkBdvqqqkQLicense: NCBI GEO policy
Metadata
- Technology
- CosMx SMI
- Vendor
- Bruker
- Organism
- human
- Tissue
- skin of body
- Condition
- mycosis fungoides
- Modality
- RNA
- Observations (cells)
- 2,820
- Tier
- silver
- Size
- 1.7 MB
- Sample ID
- GSM9853380
- License
- NCBI GEO policy
- Published
- Jul 7, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB