Datasets

Filters

Genes

symbols or Ensembl ids

Technology

Assay▾

Visium402210x Xenium1234MIBI-TOF801Vizgen MERSCOPE777spatial transcriptomics552MALDI mass spectrometry imaging421MERFISH239PhenoCycler-Fusion181Visium HD134Stereo-seq86Imaging Mass Cytometry9PhenoCycler4spatial CUT&Tag4CosMx310x Atera2spatial ATAC-seq2

Filtered, not on cards ·

Collections

Collection▾

bia-s-biad1507534Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis302bia-s-biad1288235bia-s-biad2100177Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection165abc-zhuang-abca-1147bia-s-biad2376115Overlapping yet distinct spatiomolecular profiles across mood disorders and biological sex in the human prefrontal cortex114In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics]108abc-hmba-merscope-qm23.50.001-bg86Integrating spatial gene expression and breast tumour morphology via deep learning84abc-hmba-merscope-h22.30.001-bg81Molecular Atlas of the Adult Mouse Brain75abc-zhuang-abca-266seaad-mtg-merfish64Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Visium]62Spatial transcriptomics landscape of non-communicable inflammatory skin diseases59abc-merfish-c57bl6j-63885059Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer57Single cell and spatial transcriptomics highlight the interaction of club-like cells with immunosuppressive myeloid cells in prostate cancer52Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium]48The spatiotemporal dynamics of postnatal vascularization in the mouse brain46Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics]45Spatial transcriptomics of triple negative breast cancer43Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus43COLON MAP: Colon Molecular Atlas Project41Spatially resolved multiomics of human cardiac niches41Spatial transcriptomics of high grade serous ovarian cancers38Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions36Spatiotemporal organisation of residual disease in mouse and human BRCA1-deficient mammary tumors and breast cancer36Spatially resolved transcriptomic profiling of degraded35Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes35Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease34Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics34Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis32Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment32bia-s-biad157932Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium]31Assessment of Spatial Genomics for Oncology Discovery29single-cell multiomics data for the developing human pelvic girdle [spatial]28Decoding spatial gene activity changes in multiple sclerosis lesion progression26Spatial transcriptomic analysis of tumor heterogeneity in HPV+ and HPV- Head and Neck Squamous Cell Carcinoma26Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.26Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer24Prostate needle biopsies pre- and post-ADT: Count matrices, histological-, and Androgen receptor immunohistochemistry images24Mapping the Secondary Response to Traumatic Brain Injury Using Spatial Transcriptomics Shows Acute 4-aminopyridine Treatment Mitigates Axonal and Molecular Pathology24Spatially resolved clonal copy number alterations in benign and malignant tissueJus23Spatial localization with Spatial Transcriptomics for an atlas of healthy and injured cell states and niches in the human kidney [Visium ST]23Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma23Immune profiling-based targeting of pathogenic T cells with ustekinumab in ANCA-associated glomerulonephritis23abc-zhuang-abca-323Multiomic analysis uncovers a continuous spectrum of differentiation and Wnt-MDK-driven immune evasion in hepatoblastoma [Spatial Transcriptomics]22Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-1922Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium]22Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [Spatial Transcriptomics]22Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics]21Single-nucleus transcriptomic landscape of human glomerular diseases [Xenium]21Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics]21geo-gse33347921A spatially resolved atlas of the human lung characterizes a gland-associated immune niche20Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]20DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics]20Deconvolution of regulatory T cell heterogeneity identifies cycling precursors as conductors of immune escape during breast carcinoma progression [Visium]20Clonal biases dictate availability of colonic cancer driver mutations for transformation20A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart19Multimodal decoding of human liver regeneration [st_mouse]19Spatial Multimodal Analysis: MALDI-MSI and Spatial Transcriptomics within the same tissue section19Integrative spatial analysis reveals a multi-layered organization of glioblastoma19Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq]19Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium)19Spatial Multimodal Analysis: MALDI-MSI and Spatial Transcriptomics within the same tissue section18Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity18Spatial transcriptomics dataset of non-human primates18A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium]18Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas17Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection17geo-gse28400517Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [ST]16The neurons that restore walking after paralysis [spatial transcriptomics]16Spatial heterogeneity of integrins and their ligands in primary breast tumors16A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression16A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP216Vascular invasion-associated gene expression is detectable in pre-surgical biopsies of stage I lung adenocarcinoma [Spatial Transcriptomics]16Distinct Molecular Patterns in R6/2 HD Mouse Brain: Insights from Spatiotemporal Transcriptomics [Spatial Transcriptomics]16Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics]16Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus16Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium]16Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia16SARS-CoV-2 Niches in Human Placenta Revealed by Spatial Transcriptomics15Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues15Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (spatial)15Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning15Blocking the Gut–Liver IgA Axis Attenuates Macrophage-Mediated Inflammation and Injury in Alcohol-Associated Liver Disease [Spatial Transcriptomics]15Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression14Charting the Heterogeneity of Colorectal Cancer Consensus Molecular Subtypes using Spatial Transcriptomics: datasets14Spatiotemporal transcriptome analysis reveals critical roles for mechano-sensing genes at the border zone in remodeling after myocardial infarction14Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes14Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury14Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples14Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells14Spatial transcriptomics unveils novel potential disease mechanisms associated with the microenvironment in Multiple Myeloma14CITEgeist: Cellular Indexing of Transcriptomes and Epitopes for Guided Exploration of Intrinsic Spatial Trends14Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition14Perturbed liver gene zonation in a mouse model of non-alcoholic steatohepatitis13Spatial Proteomics and Transcriptomics Reveal Early Immune Cell Organization in Pancreatic Intraepithelial Neoplasia13Eye-conic' spatial transcriptomics of keratoconus corneas1310x-xenium-ffpe-human-breast-biomarkers12spatialLIBD12INPP5D limits plaque formation and glial reactivity in the APP/PS1 mouse model of Alzheimer’s disease12Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment12Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response12Cell and Transcriptomic Diversity of Infrapatellar Fat Pad during Knee Osteoarthritis [Spatial Transcriptomics]12Safety and reactogenicity of a controlled human infection model of sand fly-transmitted cutaneous leishmaniasis12Cell state dynamics during early stages of serous endometrial carcinoma12INFLAMMATION-INDUCED SENESCENT-LIKE GLIA REWIRE CELLULAR NETWORKS IN MULTIPLE SCLEROSIS [Spatial transcriptomic]12IL-32 producing CD8+ memory T cells and Tregs define the IDO1 / PD-L1 niche in human cutaneous leishmaniasis skin lesions12In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics12Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction12The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa12A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease12Spatial Transcriptomics of Human Fetal Lungs12A Phase II Trial of Pembrolizumab plus Granulocyte Macrophage Colony Stimulating Factor in Advanced Biliary Cancer [Spatial Transcriptomics]12Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases12Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium]12Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles12Spatial analysis reveals the evolving organization of IDH-mutant glioma12geo-gse33373712geo-gse26990612oliveira-2024-colorectal11Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy [Spatial Transcriptomics]11Spatial gene expression and microenvironmental changes in the transition of nevus to melanoma11Rhythmic nephron formation in the developing kidney11Spatial multi-omics identifies rheumatoid arthritis synovial niches and de-novo laminar histological patterns of fibroblasts subtypes11A single cell and spatial atlas of preinvasive breast cancer [Visium ST]11mousemodel_Heptablastoma spatial transcriptomics10geo-gse32264010Spatial transcriptomics of HIV-associated non-Hodgkin lymphomas by EBV status and cell of origin10Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus10Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk10Spatial transcriptomics and in situ immune cell profiling of the host ectocervical landscape of HIV infected Kenyan sex working women10Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics]10Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia10Spatial gene expression profiling of aortitis samples.10Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling10Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling10Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]10Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [MERFISH]10Spatial mapping of Ethiopian cutaneous leishmaniasis lesions reveals patient-defined immune signatures10Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis10zenodo-1259524110Hepatocyte-macrophage crosstalk via the PGRN-EGFR axis modulates ADAR1-mediated immunity in the liver -Spatial Transcriptomics9Spatial transcriptomics analysis identifies a unique tumor-promoting function of the meningeal stroma in melanoma leptomeningeal disease.9Regional and Cell Specific Bioactivity of Injectable ECM Biomaterials in MI through Spatial and Single Nucleus Transcriptomics9An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium]9Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma9Spatially resolved atlas of IPF fibroblastic foci identifies that PAK2 kinase activation is involved in fibrogenesis9Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients9Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease9geo-gse2958159bia-s-biad36949Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease8Zika virus co-opts miRNA networks to persist in placental microenvironments detected by spatial transcriptomics [visium]8spatialRNAseq_heart_raw_suppdata8Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics8Visium Analysis of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution8Spatial transcriptomic profiling of the aging mouse brain [spatial scRNA-seq]8Spatial RNA-sequencing of day7 and day 21 post-LCMV Cl13 infection following transient CD4+ T cell depletion (Visium)8Multimodal human thymic profiling reveals trajectories and cellular milieu for T agonist selection [Spatial transcriptomics]8Spatial transcriptomics reveals ovarian cancer subclones with different microenvironments8In vivo macrophage engineering reshapes the tumor microenvironment leading to eradication of liver metastases [Visium]8Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs novel combination cancer therapy strategies [visium]8Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function8Spatial RNA sequencing of bleomycin-treated young and old mice lungs at day 14 and day 28 post injection8Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression8Neuromodulatory co-expression in cardiac vagal motor neurons of the Dorsal Motor Nucleus of the Vagus [spatial transcriptomics]8Histological Signatures Reveal Anti-Fibrotic Factors in Mouse and Human Lungs [Visium]8Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset3]8Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer8Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics]8CH6824025, potent and selective DDR1 inhibitor, reduces kidney fibrosis in UUO mice8Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages8Integrated Methylation and Spatial Transcriptomic Profiling of Metaplastic Breast Cancer to Investigate Intra-tumoral Heterogeneity.8Cellular cartography reveals mouse prostate organization and determinants of castration resistance [Spatial Transcriptomics]8Integrated single-cell and spatial analysis identifies context-dependent myeloid-T cell interactions in head and neck cancer immune checkpoint blockade response8Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy8A spatiotemporal atlas of orchiectomy-induced modulation of cellular composition and gene expression in the mouse prostate8Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors8Eosinophils Orchestrate Intestinal Remodeling and Promote Innate Defense During Reproduction8Spatial Transcriptomic Analysis of Mouse Parathyroid Gland Cells Expressing an Activating Variant of Gcm28Spatial transcriptomics unveils estrogen-modulated immune responses and structural alterations in the ectocervical mucosa of depot medroxyprogesterone acetate users8Spatial transcriptomic profiling of the human aortic valve reveals cellular sex differences near sites of calcification8Single-cell-scale spatial transcriptome of the developing and adult mouse ovary8Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses8Spatial Transcriptomic Mapping of Postnatal Mouse Uterine Development8Spatial Transcriptomics Reveals Compartment-Specific Cytotoxic T cells Crosstalk with AT2 and Goblet cells in Advanced COPD8Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model8geo-gse2750268geo-gse2211068A Spatial Transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease7Spatial Total RNA-Sequencing of regenerating mouse hindlimb muscle and Type 1-Lang reovirus-infected mouse heart7Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain7Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture7Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial]7Seeing the whole transcriptomics picture: Spatial gene expression analysis reveals photoreceptor stress as modulator of retinal vascular changes7Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases7Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial]7Spatial Transcriptomic Profiling of the Type 2 Diabetic Coronary Microcirculation Reveals Heterogeneity Varied by Regions of the Heart [Visium]7Ontogeny-independent expression of LPCAT2 in granuloma macrophages during experimental visceral leishmaniasis [Spatial Transcriptomics]7Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types7Identification of a long-term surviving human mesenchymal stromal cell subpopulation upon intradermal injection in immunodeficient mice7Phenylalanine Reprograms TLS Maturation and Plasma cell differentiation in MASH-HCC [Spatial Transcriptomics]7Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.7Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics]7geo-gsm92387347geo-gsm92387327Spatial transcriptomics of the mouse brain across three age groups6Neuroinflammatory astrocyte subtypes in the mouse brain [Visium]6Spatial transcriptomics of human brain metastases6Spatial sequencing of young and aged lungs following influenza A virus infection6Spatial epigenome-transcriptome co-profiling of mammalian tissues6Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics6The transcription factor Zfp281 serves redundantly with Zfp148 to support CD4+ T cell development and functions [Thymus Visium]6Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Visium]6Recirculating regulatory T cells mediate thymic regeneration [visium]6Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics]6Single-nucleus and spatial transcriptomics of human ovary: Molecular insights into signaling pathways underlying primary ovarian insufficiency in classic galactosemia [Spatial transcriptomics]6High resolution mapping of erythroid niches in mice using subcellular spatial transcriptomics6Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion6Single-Cell and Spatial Multi-omics Reveal Interferon Signaling in the Pathogenesis of Perianal Fistulizing Crohn’s Disease6In situ targeted gene expression analysis of healing skin on SD0 post-wounding in Wildtype and Rnasel knock out wounds6Integrative Spatial Multi-Omics Reveal Niche-Specific Inflammatory Signaling and Differentiation Hierarchies in Acute Myeloid Leukemia6Spatial Gene Expression of Human Coronary Arteries Revealed the Molecular Features of Diffuse Intimal Thickening in Explanted Hearts6A skeletal muscle atlas shows neuromuscular junction adaptations to growth and atrophy6HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression6Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning6Spatial transcriptomic profiling of human saphenous vein grafts reveals molecular remodeling and smooth muscle cell phenotypic transition during early neointima proliferation6Neoadjuvant modified FOLFIRINOX plus nivolumab in borderline-resectable pancreatic ductal adenocarcinoma: a pilot phase 1 trial6Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium]6Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium6Custom Probe-Based Spatial Transcriptomics Enables Microbiome Detection in FFPE Colorectal Cancer Tissue6Spatial transcriptomic dissection of intratumoral heterogeneity and microenvironment in sinonasal and skull base adenoid cystic carcinoma6Visium CytAssist Gene Expression of Post-Xenium vs Control5Ex-ST5GENE EXPRESSION WITHIN A HUMAN CHOROIDAL NEOVASCULAR MEMBRANE USING SPATIAL TRANSCRIPTOMICS5Spatially resolved transcriptomic analysis of acute kidney injury in a female murine model5mousemodel_Heptablastoma spatial transcriptomics5geo-gse3427385Time-series spatial transcriptomic analysis of murine colon undergoing AOM-DSS tumorigenesis with and without LXR activation5Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics]5Spatial transcriptomics on treatment-naïve pancreatic ductal adenocarcinoma (PDAC) patients5Multi-omic analysis reveals retinoic acid molecular drivers for fibrosis and regenerative repair in skin fibrosis [Spatial transcriptomics]5Mapping the Evolution of Acinar cell derived Pancreatic Preneoplastic Lesions in a Mouse Model: A Detailed Transcriptomic and Pathological Characterization5Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences5Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer5Prostate ST Internal5Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.5geo-gse2431205A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum4Spatiotemporally Deciphering the Unknown Role of Persistent HPV Infection in Precancer to Cervical Cancer Progression: Integrating Single-Cell RNA-Sequencing Landscape and Spatial Transcriptomics Atlas [Spatial Transcriptomics]4A novel model of binge ethanol exposure reveals enhanced neurodegeneration with advanced age4Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients4Schwann Cells Shape Tumor Cells and Cancer-Associated Fibroblasts in the Pancreatic Ductal Adenocarcinoma Microenvironment [ST]4Human ileum, Visium4Visium spatial transcriptomics analysis of lacrimal gland during chronic inflammation progression.4Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [ST]4Single cell- Cluster-RNA seq and Spatial Transcriptomics from the trunk of mouse embryos of different genotypes (wild type, Pax2-GFP, Pax2-GFP; Gata3 knockout) and developmental stages (E8.75, E9.5, E11.5) [Spatial Transcriptomics]4Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling4Integrated spatial multi-omics reveals fibroblast fate during tissue repair4Spatial transcriptomics of the ageing ovary4Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics [spatial]4Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium)4Perturb-map coupled with spatial transcriptomics identifies mutation associated gene signatures in a mouse model of lung adenocarcinoma4Spatial Transcriptomics of Joint-Draining Popliteal Lymph Nodes from Wild-type and TNF-Tg Mice with Early and Advanced Inflammatory-Erosive Arthritis4Spatial transcriptomics (Visium, 10x Genomics) data of Duchenne mouse models4Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction4scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice4Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.4Liver metastases originating from 4 colorectal cancer patients (CRC-LM).4Insulin-like growth factor I reduces coronary atherosclerosis in pigs with familial hypercholesterolemia4Spatial Multi-omics Reveals the Heterogeneity of Tumor Microenvironment in the OSF-Associated OSCC4PREGNANCY-RESPONSIVE POOLS OF ADULT NEURAL STEM CELLS FOR TRANSIENT NEUROGENESIS IN MOTHERS4Visium Spatial transcriptomics analysis of human primary colorectal cancer4Time-series spatial transcriptomic analysis of murine small intestine (SI) undergoing irradiation induced injury-repair with and without LXR activation4Molecular reframing of fibroblasts during resolution of arthritis [Visium]4Orthotopic 4T1 tumors spatial transcriptomics4In vivo single-cell CRISPR uncovers distinct TNF-α programs in tumor evolution4Nextflow Pipeline for Visium and H&E Data from Patient-Derived Xenograft Samples4Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver4Spatial transcriptomics map of the embryonic mouse brain: a tool to explore neurogenesis4Cancer-associated Fibroblast Spatial Heterogeneity and EMILIN1 Expression in Cancer Stroma Modulate TGF-b Activity and CD8+ T-Cell Infiltration in Breast Cancer4Spatial transcriptome analysis for squamous cell carcinoma arising from mature teratoma4Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition4Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen [Spatial transcriptomics]4Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver4Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis4Role of copper in progression of clear cell renal cell carcinoma [Spatial transcriptomics]4Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics]4Dynamic fibroblast-immune interactions shape recovery after brain injury [Visium]4Comparing 10x Visium spatial transcriptomic technologies4Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis4Spatial transcriptomic sequencing data of human small cell lung cancer4Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics]410X Visium Spatial transcriptomics of murine small intestine 6 and 14 days post Heligmosomoides polygyrus infection with or without LXR agonist GW39654Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution (VISIUM)4Spatial characterization of the transcriptome of the adult healthy and mutant FUS mouse spinal cords [Spatial transcriptomics]4Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome]4Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice (Spatial Transcriptomics)4Lgr5 Marks Stem/Progenitor Cells Contributing to Epithelial and Muscle Development in the Mouse Esophagus4Mid-Lobular Hepatocytes Exhibit Transient Proliferation Pause and Stress Response through Atf4-Ddit3 axis in Early Acute Liver Injury (10x Visium)4The roles of glioma-associated macrophages/microglia in human GBM4Extraction of a Stromal Metastatic Gene Signature in Breast Cancer via Spatial Profiling4Mapping the genetic landscape establishing a tumor immune microenvironment favorable for anti-PD-1 response in mice and humans (Visium).4Differential Activity of MAPK signalling Defines Fibroblast Subtypes in Pancreatic Cancer (Spatial Transcriptomics)4Effects of inhibiting stearoyl-CoA desaturase (SCD) on the spatial transcriptome in a mouse model of Alzheimer's disease (AD)4Single cell deletion of the transcription factors Sox9 and Trps1 reveals novel functions in adult cortical astrocytes [Spatial transcriptomics]4Reprogramming of epidermal keratinocytes by PITX1 transforms the cutaneous cellular landscape and promotes wound healing [Xenium]4Spatial component of: CELSR3 deficiency leads to tic-related behaviors and dopaminergic alterations in the striatum4FOXA1 loss drives basal/squamous de-differentiation of prostate cancer and induces an immunosuppressive tumor microenvironment4CDK12/13 inactivation triggers STING-mediated antitumor immunity in preclinical models4Spatial transcriptomics of the human first trimester decidua4Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front4Fibroblast-Derived Thrombospondin 2 Shapes the Immune-Exclusionary Environment at Invasive Fronts in Colorectal Cancer [Visium4Gas6-Axl signaling drives oral regenerative wound repair4Mouse uterine gene expressions during decidual processes [Visium]4Breast Cancer Remodels Lymphatics in Sentinel Lymph Nodes4Defining Cellular Diversity at the Swine Maternal-Fetal Interface Using Spatial Transcriptomics and Organoids [MFI017_Visium]4Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC4Spatial transcriptomics and scRNA-sequencing on gastrocnemius muscle form B6-mdx and D2-mdx mice4Molecular pathology of acute spinal cord injury in middle-aged mice4Spatial transcriptomic profiling of seborrhoeic keratoses4Spatial tumour-immune ecosystems shape the efficacy of anti-PD1 immunotherapy in primary cutaneous melanoma [Spatial Transcriptomics]4Dysmorphic neurons express markers of inhibitory glycinergic signaling in focal cortical dysplasia44R-Tau Seeding Activity Reveals Molecular Subtypes in Progressive Supranuclear Palsy4Spatial transcriptional features of MYCN niche in liver tumorigenesis.4Single-cell and spatial transcriptomic analyses of gene therapy-associated retinal inflammation in non-human primates4Intercellular signaling and synaptic deconstruction uncovered by single-cell and spatial transcriptomics in an AD tauopathy model4Comparative Eye Transcriptome Atlas4Translational profiling of ET-insensitive cell populations in ER+ breast cancer reveals new therapeutic vulnerabilities4The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages4Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy4HIF regulatory network reflects kidney disease progression in diabetes and reversal with SGLT2 inhibition4Single cell and spatial sequencing analysis of cancer associated fibroblasts in the brain metastasis tumor microenvironment4Spatial Transcriptomics Analysis of inflamed versus healthy Dental Pulps4Single-cell and Spatial Transcriptomic Profiling of the Bone Metastatic Microenvironment4TREM2⁺ macrophages from distinct origins mediate compartment-specific protection in diabetic kidney disease [Spatial Transcriptomics]4Spatial transcriptomic analysis of mouse liver in a high-fat diet model with kimchi supplementation4Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma using 10x Genomics Visium platform4Cellular Signatures of Melanocortin Pathway Genes Across the Locus Coeruleus [Spatial Transcriptomics]4Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses4Epicardial fat drives macrophage response in atrial cardiomyopathy4Spatial transcriptomics profiling of NDMA-induced liver injury in Mgmt-deficient mice across sex and time4Spatial transcriptomic landscape of protein-coding genes in descended and undescended testes of dogs with unilateral cryptorchidism4A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics]4Targeting JAK1/3-STAT1 signaling attenuates cytotoxic T lymphocytes activation for the treatment in Stevens-Johnson syndrome and toxic epidermal necrolysis4Integrated bulk and spatial transcriptomic analysis identifies progression-associated molecular signatures in biopsy-proven hypertensive nephropathy [Spatial Transcriptomics]4Regional differential gene expression analyses of brains from four 24w-old Nf1+- mice4Spatial transcriptomics reveals microenvironmental heterogeneity in osteoarthritic subchondral bone4A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states4A new epithelial cell subpopulation predicts response to surgery, chemotherapy, and immunotherapy in bladder cancer4geo-gse2983144geo-gse2620834geo-gse2673154High resolution mapping of erythroid niches in human using subcellular spatial transcriptomics310x-mouse-bone-data-with-custom-add-on-panel-1-standard310x-human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard3A cellular hierarchy in melanoma uncouples growth and metastasis3Spatial RNA sequencing of regenerating mouse hindlimb muscle3The spatial landscape of gene expression isoforms in tissue sections3Cardiac reprogramming and Gata4 overexpression reduce fibrosis and improve diastolic dysfunction in heart failure with preserved ejection fraction [Visium]3Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces3ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution (spatial transcriptomics subset)3Spatial transcriptome gene expression profile in 2 patients with Hashimoto's thyroiditis and 2 patients with papillary thyroid cancer combined with Hashimoto's thyroiditis.3Spatial Transcriptomic profiling of day2 wounds and intact tissues of Hgfac WT and KO mice3Spatial transcriptomics of primary human hepatoblastomas3Mouse uterine gene expressions during peri-implantation period3snPATHO-seq: unlocking the FFPE archives for single nucleus RNA profiling [Visium]3Specific oncogenic drivers differently shaped the composition and functional diversity of immune cells in the microenvironment of experimental gliomas3Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state3Spatial transcriptomics for platinum-resistant high-grade serous ovarian carcinoma3Spatial transcriptomical analysis of livers from patients with COVID193Spatially-restricted and ontogenically-distinct hepatic macrophages are required for tissue repair.3Multi-Omic Single-Cell Dissection of Leukemic T-Cell Lymphoma Following CAR T-Cell Therapy [Spatial Transcriptomics]3Multi-omics analysis identifies erythroid cells as the major population in mouse placentas expressing the MHC class II antigen presentation, chemokine, and antibacterial immune response genes [Spatial Transcriptomics]3Intratumoral spatiotemporal heterogeneity of HPV status in HPV-associated oropharyngeal squamous cell carcinoma with clinical record3Hypoxia shapes both therapeutic response and resistance in metastatic clear cell renal cell carcinoma [Spatial Transcriptomics]3Region- and cell type-specific changes in gene expression in the cerebellum after classical fear conditioning [Spatial Transcriptomics]3Profiling the Microenvironment in Tuberous Sclerosis Complex-Associated Angiomyolipoma: Insights from Spatial Gene Expression Analysis3High resolution spatial trancrioptomics combined with deep learning-based image segmentation enables single-cell spatial profiling of archival FFPE kidney tissue from patients with idiopathic nephrotic syndrome3Spatial transcriptomics reveals injury-responsive compartments and coordinated immune–fibrotic signaling in ANCA-associated renal vasculitis3Integrated Spatial Transcriptomics and Single-Cell RNA Sequencing Reveal Lars2-Mediated Spatiotemporal Dynamics of Myocardial Remodeling in a Mouse Model of Transverse Aortic Constriction (TAC)3High-resolution spatial transcriptomics of human liver with VisiumHD3Spatial transcriptomics of MRGPRX4-driven melanoma3Spatially resolved gene expression and tumour-microenvironment interactions across malignant transformation in IDH-mutant glioma3Vascular STING activation facilitates NK cell anti-tumor immunity in small cell lung cancer [Spatial_Transcriptome]3Inflammatory immune modulators of AML lung infiltration and respiratory failure3Polarized neocortical organoids with areal signatures upon the formation of anterior and posterior organizers. [Spatial Transcriptomics]3Integration of spatial and single cell transcriptomics localizes epithelial-immune cross-talk in kidney injury3Mapping the Tissue Architecture and Endothelial-PEC Network in Hepatic Angiomyolipoma Using Single-cell and Spatial Transcriptomics [Spatial Transcriptomics]3abc-zhuang-abca-43geo-gsm92387333geo-gse2921563geo-gse2947593geo-gse2744473Morphological and Functional Diversity of Spatially Resolved Vestibular Ganglion Neuron Cell Types2Immune Dynamics in Palmoplantar Pustulosis Unveiled by Single-Cell and High-Resolution Spatial Transcriptomics [Spatial Transcriptomics]2Gain-of-function ENL YEATS domain mutations impede nephrogenesis through gene expression control [Spatial Transcriptomics]2Inference of cell-cell communication in human fetal liver from high definition spatial profiling using Renoir2figshare-251235382bia-s-biad8592bia-s-biad2491210x-xenium-human-lung-cancer-post-xenium-technote210x-xenium-comparison-fresh-frozen-human-ovarian-cancer210x-human-skin-data-xenium-human-multi-tissue-and-cancer-panel-1-standard210x-human-kidney-preview-data-xenium-human-multi-tissue-and-cancer-panel-1-standard210x-human-tonsil-data-xenium-human-multi-tissue-and-cancer-panel-1-standard210x-human-colon-preview-data-xenium-human-colon-gene-expression-panel-1-standard210x-human-liver-data-xenium-human-multi-tissue-and-cancer-panel-1-standard2Batf3-dendritic cells and 4-1BB-4-1BB ligand axis are required at the effector phase within the tumor microenvironment for PD-1-PD-L1 blockade efficacy210X Visium Spatial transcriptomics of murine colon in steady state and during recovery after DSS colitis2A single-cell transcriptomic analysis of endometriosis2Identification of TREM1+CD163+ myeloid cells as a deleterious immune subset in HCC [Spatial Transcriptomics]2Distinct mesenchymal cell states mediate prostate cancer progression [Spatial Transcriptomics]2Single-nucleus Ribonucleic Acid-sequencing and Spatial Transcriptomics Reveal the Cardioprotection of Shexiang Baoxin Pill (MUSKARDIA) in Mice with Myocardial Ischemia-Reperfusion Injury2Spotiphy: generative modeling in single-cell spatial whole transcriptomics210X Visium Spatial transcriptomics of murine colon in steady state and during recovery after DSS colitis2Cell type inference in human lung tissue by domain adaptation of single-cell and spatial transcriptomic data2Epithelial Plasticity and Innate Immune Activation Promote Lung Tissue Remodeling following Respiratory Viral Infection.2Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues2Interleukin 7 therapy changes tumor immune environment to pro-inflammatory through myeloid and T cell interactions [Visium]2A cellular hierarchy in melanoma uncouples growth and metastasis2Fragment-sequencing unveils local tissue microenvironments at single cell resolution2Spatial transcriptomic analysis of a pre-clinical NF1 pseudarthrosis fracture model2Reconstruction of 3-dimensional tissue organization at the single-cell resolution [ST]2Visium spatial gene expression analyses of ovarian clear cell carcinoma (OCCC) [visium OCCC]2Shared inflammatory glial cell signature after brain injury, revealed by spatial, temporal and cell-type-specific profiling of the murine cerebral cortex [spatial transcriptomics]2Spatial Transcriptomics of Brains Infected with VEEV2Human and Murine Kidneys Contain Transcriptionally and Spatially Orthologous Resident Macrophage Subpopulations in Acute Kidney Injury2Human Cortical Kidney Sections2Synovial Th17 transdifferentiation into exTh17 sustains chronic IL-17-independent inflammatory arthritis [Visium]2Pharmacological targeting Netrin-1 inhibits EMT in cancer [Visium]2Spatiotemporal trajectory analysis and validation of microglia activation in traumatic brain injury2Age-related epithelial defects limit thymic function and regeneration [visium]2Spatial Transcriptomics reveals that cells that experience intratumoral hypoxia retain hypoxia-associated transcriptional programs after invading into oxygenated tumor regions.2A Proteomic Atlas of Atherosclerosis: The Contribution of Proteoglycans to Sex Differences, Plaque Phenotypes and Outcomes2Clonal proliferation of smooth muscle cell in human atherosclerosis2Spatial transcriptomics reveal signatures of histopathological changes in muscular sarcoidosis2Identification of TREM1+CD163+ myeloid cells as a deleterious immune subset in HCC [Spatial Transcriptomics]2Spatial transcriptomics to dissect molecular signature of cardiac fibroblasts in experimental autoimmune myocarditis2Double-negative B cells and DNASE1L3 colocalise with microbiota in gut-associated lymphoid tissue2High-resolution analysis of mononuclear phagocytes reveals clinically relevant markers in human colo-rectal liver metastasis - Visium Spatial Transcriptomics2Spatial transcriptomics reveals C10 tumor transcriptomic changes generated by Smarta cell transfer2Glycolysis in hepatic stellate cells coordinates fibrogenic extracellular vesicle release in a spatial manner to amplify liver fibrosis2Germinal Center Dark Zone harbors ATR-dependent determinants of T-cell exclusion that are also identified in aggressive lymphoma – Visium_FFPE_Spatial_Trasciptomics_project2Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Visium]2Spatial transcriptome analysis for placental tissue of preeclampsia2spatialGE is a User-Friendly Web Application that Facilitates Spatial Transcriptomics Data Analysis2Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii2Creeping fat-derived mechanosensitive fibroblasts drive intestinal fibrosis in Crohn’s disease strictures [Visium]2Distinct Myeloid Derived Suppressor Cell Populations in Human Glioblastoma210X Visium Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD)2A blueprint for local and distal glioblastoma invasion programs2Spatial transcriptomic profiling of the lung tissues from a patient with recurrent anti-synthetase syndrome associated interstitial lung disease after bilateral lung transplantation and one untreated patient2Glioma-neuronal circuit remodeling induces regional immunosuppression [visium]2Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [VisiumHD]2Salivary gland transcriptomic analysis in the IL-14α transgenic mouse model of Sjögren’s disease using Visium V1 3' spatial gene expression assay2Polyamines regulate adaptive antitumor immunity by functional specialization of regulatory T cells [Visium]2Targeting circulating mechanoresponsive monocytes and macrophages to reduce fibrosis2Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process2Spatial transcriptomics of Atg7 knockout mice reveals ATG7’s role in antimicrobial immunity against nontuberculous mycobacteria2IL-17A Neutralization Prevents Immune Checkpoint Inhibitor-Associated Myocarditis and Synergistically Enhances Immune Checkpoint Blockade Therapy2Immunosuppressive tumor microenvironment of osteosarcoma [Spatial transcriptomics]2Subclinical Neonatal HSV-1 Infection Triggers Immune Responses and Modulates Neurological Pathways Leading to Long-Term Sequelae [Visium]2A novel CAF population coordinates hyper-suppressive regulatory T cell recruitment and localization in lung cancer [Spatial Transcriptomics]2Genetic deletion of Usp22 in KRASG12D-p53-null driven mouse lung cancer [Visium]2Integrated single-cell and spatial transcriptomics of ovarian immune landscape reveal role of distinct macrophages in classic galactosemia associated with premature ovarian insufficiency2A targetable developmental program co-regulates angiogenesis and immune evasion [Spatial Transcriptomics]2Spatially-guided metabolomics profiling of heterogeneous human tumor tissues2Targeting the lipid metabolism proteins FASN and GPAM in alveolar type II cells decreases lung metastasis2Spatial transcriptomic profiling of TOP2B-driven anthracycline-induced cardiotoxicity in mouse hearts2High-resolution and noninvasive profiling of the tumor microenvironment with spatial ecotypes [Visium]2Spatial transcriptomic analysis of human iPSC-derived hemanoids at day 16 and day 282Interleukin-34 induced Arg1+ macrophages play a key role in breast cancer brain metastasis2Spatial transcriptomic analysis of patient- and cell line-derived high grade serous ovarian cancer spheroids2MALADAPTIVE IMMUNE-FIBROTIC AXIS DRIVES IMPAIRED LONG BONE REGENERATION UNDER MECHANICAL INSTABILITY2Ultrasound-Mediated BBB Opening Promotes Microglial Reprogramming and Enhanced Endothelial Interactions in the Human Peritumoral Brain [Visium]2YAP Drives Assembly of a Spatially Colocalized Cellular Triad Required for Heart Renewal2Xenium spatial transcriptomics identifies mesenchymal fibroblast expansion and conserved fibrotic ECM programs in keloid210X Visium Spatial transcriptomics of murine colon at d14 (mucosa healing) in B cell sufficient-deficient mice2geo-gse2684922geo-gse334924-camr-kidney1geo-gse2609261geo-gse345644110x-ffpe-human-brain-cancer-human-immuno-oncology-profiling-panel-custom-add-on110x-preview-ffpe-human-lung-cancer-xenium-multimodal-cell-segmentation110x-ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation110x-fresh-frozen-mouse-colon-xenium-multimodal-cell-segmentation1geo-gse3494111zenodo-77424741geo-gsm92387301zenodo-236726661geo-gse2760631geo-gse3089521zenodo-176176261geo-gse2944421geo-gse3245351geo-gse2223831

Biology

Organism▾

human5194mouse2982macaque110rat94ambystoma mexicanum30crab-eating macaque20dog13leucoraja erinaceus8pig8golden hamster4zebra finch4arabidopsis thaliana1branchiostoma floridae1glycine max1zebrafish1

Filtered, not on cards ·

Tissue▾

brain2324

▸nervous system1258

▸central nervous system1067

▸spinal cord380

lumbar spinal cord3

▸gray matter333

basal ganglion238

▸cerebral cortex317

dorsolateral prefrontal cortex202

▸neocortex31

temporal cortex10

primary motor cortex4

▸white matter44

brain white matter12

leptomeninx5

▸forebrain213

▸telencephalon184

▸cerebral hemisphere175

▸temporal lobe80

middle temporal gyrus68

superior temporal gyrus2

▸amygdala57

central amygdaloid nucleus2

medial amygdaloid nucleus2

intercalated amygdaloid nuclei1

olfactory lobe18

▸frontal lobe14

prefrontal cortex12

middle frontal gyrus2

nucleus accumbens4

parietal lobe2

caudate nucleus5

striatum4

hypothalamus13

▸brainstem62

pons4

▸hindbrain50

locus ceruleus47

myelencephalon3

hippocampal formation24

anterior cingulate cortex21

▸ganglion20

dorsal root ganglion18

cranial ganglion2

peripheral nervous system16

cerebellum12

nerve plexus8

corpus striatum5

dentate gyrus of hippocampal formation4

midbrain1

▸digestive system964

▸digestive tract549

▸colon210

sigmoid colon15

descending colon7

ascending colon6

transverse colon3

▸intestine202

▸small intestine54

ileum12

jejunum5

rectum39

▸mouth36

oral cavity18

submandibular gland11

oral opening2

▸pharynx25

oropharynx20

hypopharynx2

▸lower digestive tract14

colorectum9

foregut6

upper digestive tract5

caecum4

bile duct12

breast963

▸viscus844

▸pancreas314

pancreatic lymph node15

urinary bladder17

gland648

▸kidney546

cortex of kidney10

▸immune system545

▸lymphoid system380

▸lymph node348

mediastinal lymph node8

pelvic lymph node4

▸lymphoid tissue32

▸gut-associated lymphoid tissue22

▸tonsil20

palatine tonsil7

▸integument500

▸zone of skin45

hair follicle6

perianal skin6

skin of back3

▸respiratory system487

lung430

▸respiratory airway13

larynx10

upper respiratory tract3

▸endocrine system465

thyroid gland20

parathyroid gland8

adrenal gland7

▸exocrine system440

▸liver395

left lobe of liver4

▸right lobe of liver4

caudate lobe of liver3

capsule of liver1

▸reproductive system417

▸female reproductive system241

ovary137

▸oviduct53

▸uterus52

uterine cervix7

fallopian tube1

placenta51

▸male reproductive system146

prostate gland138

testis6

penis2

ectocervix30

▸circulatory system349

▸heart273

▸cardiac ventricle33

heart left ventricle29

▸cardiac valve9

aortic valve8

cardiac atrium4

▸cardiovascular system126

▸artery94

▸coronary artery50

right coronary artery4

common carotid artery plus branches29

carotid artery segment2

▸aorta22

abdominal aorta10

thoracic aorta10

▸musculoskeletal system198

▸skeletal system197

▸appendicular skeleton37

pelvic girdle skeleton28

▸long bone9

zone of long bone4

▸hindlimb skeleton7

femur5

tibia2

cranium4

▸skeletal element195

▸bone element189

bone marrow80

▸endochondral bone35

limb bone7

bone tissue22

periosteum2

calcareous tooth4

growth plate cartilage1

intervertebral disk1

▸vasculature126

vasculature of brain2

▸hematopoietic system87

spleen50

thymus35

▸limb79

▸knee17

infrapatellar fat pad12

stylopod10

cephalic vein8

saphenous vein6

forelimb zeugopod1

▸entire sense organ system67

visual system45

▸sense organ43

▸eye35

▸retina22

macula lutea7

tongue8

▸vestibulo-auditory system10

vestibulocochlear nerve8

barrel cortex4

▸serous membrane65

synovial membrane of synovial joint29

peritoneum20

pleura14

mesentery2

▸musculature of body54

skeletal muscle tissue24

gastrocnemius9

diaphragm8

plantaris6

quadriceps femoris4

tibialis anterior3

▸integumental system47

mammary gland34

▸hypodermis13

subcutaneous adipose tissue12

entorhinal cortex45

▸craniocervical region39

▸head31

cranial nerve II10

skull4

▸cheek2

buccal mucosa1

skin of face2

skin of temple1

▸mucosa34

endometrium1

tail22

embryo14

cornea13

▸tendon12

calcaneal tendon4

▸skeletal joint8

synovial joint4

nasal cavity7

▸extraembryonic structure4

decidua basalis2

decidua parietalis2

membranous labyrinth2

eyelid1

renal system1

Not recorded83

Filtered, not on cards ·

Condition▾

▸neoplasm3051

▸cancer2580

▸integumentary system cancer185

breast adenocarcinoma124

respiratory system cancer169

▸high grade malignant neoplasm153

malignant glioma142

▸in situ carcinoma11

adenocarcinoma in situ11

breast carcinoma in situ11

immune system cancer73

▸sarcoma52

osteosarcoma29

small cell sarcoma6

musculoskeletal system cancer19

secondary malignant neoplasm12

▸epithelial neoplasm1944

▸carcinoma1936

▸invasive carcinoma121

invasive ductal breast carcinoma113

metaplastic breast carcinoma8

transitional cell carcinoma6

large cell carcinoma5

▸glandular cell neoplasm721

▸adenocarcinoma721

tubular adenocarcinoma210

serous adenocarcinoma71

clear cell adenocarcinoma36

acinar cell carcinoma27

adenoid cystic carcinoma7

diffuse type adenocarcinoma2

serous neoplasm71

squamous cell neoplasm151

adenoma7

transitional cell neoplasm6

basal cell neoplasm4

▸neoplasm of thorax1303

thoracic cancer1285

▸breast neoplasm1149

▸breast cancer1131

▸breast carcinoma1042

▸breast carcinoma by gene expression profile848

estrogen-receptor negative breast cancer832

Her2-receptor negative breast cancer832

progesterone-receptor negative breast cancer832

estrogen-receptor positive breast cancer16

intraductal breast neoplasm11

neoplasm of mediastinum6

▸digestive system neoplasm531

▸digestive system cancer505

digestive system carcinoma437

▸pancreatic neoplasm235

malignant pancreatic neoplasm234

▸pancreatic exocrine neoplasm227

pancreatic adenocarcinoma220

▸intestinal neoplasm151

▸colorectal neoplasm141

▸colonic neoplasm47

malignant colon neoplasm47

▸epithelial tumor of colon44

colon adenocarcinoma43

▸rectal neoplasm4

epithelial neoplasm of rectum4

rectal cancer4

▸intestinal cancer134

▸colorectal carcinoma76

colorectal adenocarcinoma50

▸small intestine neoplasm10

mesenchymal tumor of small intestine2

▸hepatobiliary neoplasm104

▸liver cancer97

▸carcinoma of liver and intrahepatic biliary tract95

hepatocellular carcinoma83

▸biliary tract neoplasm12

▸bile duct neoplasm12

▸bile duct cancer12

▸bile duct carcinoma12

bile duct adenocarcinoma12

extrahepatic bile duct carcinoma12

malignant tumor of extrahepatic bile duct12

extrahepatic bile duct neoplasm12

biliary tract cancer12

oral cavity neoplasm20

▸pharynx neoplasm17

▸carcinoma of pharynx17

pharyngeal squamous cell carcinoma14

neoplasm of oropharynx12

nasopharyngeal neoplasm3

neoplasm of hypopharynx2

▸gastric neoplasm3

gastric carcinoma2

▸nervous system neoplasm328

▸neuroepithelial neoplasm294

▸glioma290

▸astrocytic tumor114

high grade astrocytic tumor111

astrocytoma (excluding glioblastoma)3

▸low grade glioma78

grade II glioma70

ependymal tumor70

▸central nervous system neoplasm170

▸brain neoplasm49

▸brain cancer33

brain glioma31

infratentorial cancer14

cerebellar neoplasm16

▸brainstem neoplasm14

▸brain stem glioma14

diffuse midline glioma, H3 K27M-mutant4

childhood brain stem neoplasm14

infratentorial neoplasm14

▸nervous system cancer160

central nervous system cancer154

peripheral nervous system neoplasm8

tumor of cranial and spinal nerves8

▸hematopoietic and lymphoid system neoplasm239

▸hematopoietic and lymphoid cell neoplasm238

▸lymphoid neoplasm219

T-cell and NK-cell neoplasm3

neoplasm of immature B and T cells1

precursor lymphoblastic lymphoma/leukemia1

myeloid neoplasm67

▸leukemia11

acute leukemia11

myeloid leukemia10

lymphoid leukemia1

▸lymphoid hemopathy219

▸B-cell neoplasm205

▸neoplasm of mature B-cells165

▸plasma cell neoplasm48

smoldering plasma cell myeloma6

▸non-Hodgkin lymphoma168

▸B-cell non-Hodgkin lymphoma157

▸aggressive B-cell non-Hodgkin lymphoma117

diffuse large B-cell lymphoma98

indolent B-cell non-Hodgkin lymphoma40

spleen neoplasm40

▸myeloid hemopathy20

myelodysplastic syndrome1

bone marrow neoplasm19

▸reproductive system neoplasm226

reproductive system cancer226

▸male reproductive system neoplasm117

prostate carcinoma35

prostate neoplasm117

▸female reproductive system neoplasm109

female reproductive organ cancer109

▸ovarian neoplasm104

ovarian cancer104

▸ovarian epithelial tumor79

▸malignant epithelial tumor of ovary79

ovarian adenocarcinoma73

ovarian squamous cell neoplasm4

ovarian clear cell tumor2

▸tumor of uterus5

▸uterine cancer5

▸uterine carcinoma3

cervical carcinoma2

uterine cervix neoplasm4

endometrium neoplasm1

▸respiratory tract neoplasm167

▸lung neoplasm148

▸lung carcinoma116

▸non-small cell lung carcinoma86

lung adenocarcinoma44

squamous cell lung carcinoma7

pleural neoplasm12

laryngeal neoplasm4

▸endocrine gland neoplasm155

malignant endocrine neoplasm140

▸neuroendocrine neoplasm33

▸neuroendocrine carcinoma25

small cell carcinoma14

lung neuroendocrine neoplasm14

digestive system neuroendocrine neoplasm8

thyroid tumor12

thymus neoplasm6

▸head and neck neoplasm108

▸head and neck cancer107

head and neck squamous cell carcinoma104

▸lip and oral cavity carcinoma20

lip and oral cavity squamous cell carcinoma20

oral cavity carcinoma20

neoplasm of neck17

odontogenic neoplasm1

melanocytic neoplasm90

▸embryonal neoplasm79

hepatoblastoma39

▸Ewing sarcoma/peripheral primitive neuroectodermal tumor13

Ewing sarcoma10

central nervous system Ewing sarcoma/peripheral primitive neuroectodermal tumor3

primitive neuroectodermal tumor4

▸skin neoplasm69

skin cancer61

▸epithelial skin neoplasm41

skin squamous cell carcinoma35

melanocytic skin neoplasm20

dermis tumor6

▸urinary system neoplasm47

malignant urinary system neoplasm47

▸kidney neoplasm34

nonpapillary renal cell carcinoma33

renal cell adenocarcinoma33

urinary bladder neoplasm13

▸virus associated tumor28

▸Epstein-Barr virus-related tumor22

Epstein-Barr virus-associated malignant lymphoproliferative disorder19

Epstein-Barr virus-associated carcinoma3

▸connective tissue neoplasm19

myelofibrosis9

▸connective and soft tissue neoplasm17

▸malignant soft tissue neoplasm13

central nervous system sarcoma7

rhabdoid tumor7

▸neoplasm with perivascular epithelioid cell differentiation4

angiomyolipoma3

lymphangioleiomyomatosis1

▸childhood neoplasm14

childhood infratentorial neoplasm14

childhood malignant neoplasm14

mesothelial neoplasm12

▸benign neoplasm1

benign epithelial neoplasm1

musculoskeletal system benign neoplasm1

amyotrophic lateral sclerosis302

▸kidney disorder166

diabetic kidney disease35

acute kidney failure26

pauci-immune glomerulonephritis with ANCA23

acute tubulointerstitial nephritis9

renal fibrosis7

nephrolithiasis6

membranous glomerulonephritis5

hypertensive nephropathy4

IgA glomerulonephritis4

lipoid nephrosis4

lupus nephritis4

nephrotic syndrome2

Balkan nephropathy1

focal segmental glomerulosclerosis1

▸liver disorder150

▸fatty liver disease20

▸metabolic dysfunction-associated steatotic liver disease17

metabolic dysfunction-associated steatohepatitis13

drug-induced liver injury8

alcoholic liver diseases7

▸liver failure6

acute liver failure5

fibrotic liver disease2

▸heart disorder109

myocardial infarction46

▸cardiomyopathy27

cardiac sarcoidosis18

▸myocarditis5

viral myocarditis2

aortic valve stenosis11

▸heart failure11

diastolic heart failure2

▸coronary artery disorder5

coronary atherosclerosis4

DiGeorge syndrome2

endocardial fibroelastosis2

▸tauopathy94

Alzheimer disease92

▸colitis83

ulcerative colitis49

▸injury78

▸brain injury50

traumatic brain injury48

spinal cord injury16

ischemia reperfusion injury3

bone fracture2

radiation injury1

atherosclerosis74

schizophrenia62

▸demyelinating disease of central nervous system57

multiple sclerosis50

bipolar disorder40

major depressive disorder36

▸diabetes mellitus35

type 2 diabetes mellitus17

type 1 diabetes mellitus16

Crohn disease34

cutaneous leishmaniasis34

sarcoidosis33

malaria29

▸interstitial lung disease24

pulmonary fibrosis22

systemic sclerosis24

COVID-1923

lichen planus23

acne19

atopic eczema19

obsolete idiopathic pulmonary fibrosis19

▸osteoarthritis18

osteoarthritis, knee12

▸psoriasis18

pustulosis palmaris et plantaris2

simian immunodeficiency virus infection18

chronic obstructive pulmonary disease17

▸rheumatoid arthritis15

psoriatic arthritis4

anti-neutrophil cytoplasmic antibody-associated vasculitis12

▸cholestasis12

biliary atresia8

▸juvenile idiopathic arthritis12

oligoarticular juvenile idiopathic arthritis6

rheumatoid factor-negative juvenile idiopathic arthritis3

systemic-onset juvenile idiopathic arthritis1

Duchenne muscular dystrophy11

Huntington disease11

Parkinson disease10

cryptococcosis9

asthma8

graft versus host disease8

keratoconus8

lymphocytic choriomeningitis8

obesity disorder8

temporal lobe epilepsy8

wet macular degeneration8

influenza7

▸mycobacterial infectious disease7

tuberculosis5

▸synucleinopathy7

Lewy body dementia6

bronchopulmonary dysplasia6

▸cholangitis6

primary sclerosing cholangitis5

Down syndrome6

hidradenitis suppurativa6

Invasive Ductal Carcinoma6

pancreatitis6

▸polyneuropathy6

chronic inflammatory demyelinating polyradiculoneuropathy2

temporal arteritis6

HIV infectious disease5

Zika virus infectious disease5

benign prostatic hyperplasia4

cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 14

drug allergy4

isolated focal cortical dysplasia type II4

Loeys-Dietz syndrome4

MONDO:10150274

MONDO:10601714

primary hyperparathyroidism4

▸primary ovarian failure4

classic galactosemia3

progressive supranuclear palsy4

radiation-induced disorder4

visceral leishmaniasis4

anal fistula3

Endometrial Adenocarcinoma3

Hashimoto thyroiditis3

pulpitis3

Sjogren syndrome3

tuberous sclerosis3

autism spectrum disorder2

clonal hematopoiesis of indeterminate potential2

cryptorchidism2

endometriosis2

herpes simplex type 1 infectious disease2

Invasive Lobular Carcinoma2

keloid2

monoclonal gammopathy of uncertain significance2

pityriasis rubra pilaris2

tic disorder2

uveitis2

bacterial infectious disease with sepsis1

cervical intraepithelial neoplasia grade 2/31

coccidioidomycosis1

glioblastoma multiforme1

human papilloma virus infection1

IgG4-related disease1

intracerebral hemorrhage1

lipodystrophy1

pancreatic cancer1

peritonitis1

preeclampsia1

sensorineural hearing loss disorder1

stroke disorder1

Venezuelan equine encephalitis1

Filtered, not on cards ·

Quality

Tier▾

bronze4391silver4061

Filtered, not on cards ·

H&E image▾

H&E5143

Filtered, not on cards ·

Magnification▾

other111020x38640x377

Filtered, not on cards ·

Interactive viewer▾

Vitessce7510

Data

Modality▾

RNA7048protein997Metabolomics421Epigenomics6

Rights

Commercial use▾

Commercial use OK6853NonCommercial1618

Filtered, not on cards ·

8,471 of 8,471 datasets

Show on cards

ThumbnailAssayOrganismTissueConditionSizeTierH&EObs countGenesLicenseMagnification

No datasets match these filters.

Can't find a dataset? Request it