10x Xenium
Human urinary bladder
GSM9181143
bronze Interactive viewer urinary bladder carcinoma Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 34118, 54004), (1, 17059, 27002), (1, 8529, 13501), (1, 4264, 6750), (1, 2132, 3375)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (34118, 54004), (17059, 27002), (8529, 13501), (4264, 6750), (2132, 3375)
│ └── 'nucleus_labels': DataTree[yx] (34098, 53993), (17049, 26996), (8524, 13498), (4262, 6749), (2131, 3374)
├── Points
│ └── 'transcripts': DataFrame with shape: (8995697, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (155081, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (155081, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (155037, 2) (2D shapes)
└── Tables
└── 'table': AnnData (155081, 426)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("72peU7wMR7VtVq980000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("72peU7wMR7VtVq98") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download 72peU7wMR7VtVq980000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/72peU7wMR7VtVq98
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 72peU7wMR7VtVq98License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- urinary bladder
- Condition
- urinary bladder carcinoma
- Modality
- RNA
- Observations (cells)
- 155,081
- Transcripts
- 8,995,697
- Tier
- bronze
- Size
- 2.2 GB
- Sample ID
- GSM9181143
- License
- NCBI GEO policy
- Published
- Feb 6, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB