10x Xenium
Human unknown
GSM9982049
silver Interactive viewer neuroblastoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 84850, 51101), (1, 42425, 25550), (1, 21212, 12775), (1, 10606, 6387), (1, 5303, 3193)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (84592, 50984), (42296, 25492), (21148, 12746), (10574, 6373), (5287, 3186)
│ └── 'nucleus_labels': DataTree[yx] (84545, 50955), (42272, 25477), (21136, 12738), (10568, 6369), (5284, 3184)
├── Points
│ └── 'transcripts': DataFrame with shape: (383198157, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (1281532, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (1281532, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (1292354, 2) (2D shapes)
└── Tables
└── 'table': AnnData (1281532, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("wHqCNv7BDmPiLwGP0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("wHqCNv7BDmPiLwGP") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download wHqCNv7BDmPiLwGP0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/wHqCNv7BDmPiLwGP
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid wHqCNv7BDmPiLwGPLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- unknown
- Condition
- neuroblastoma
- Modality
- RNA
- Observations (cells)
- 1,281,532
- Transcripts
- 383,198,157
- Tier
- silver
- Size
- 15.2 GB
- Sample ID
- GSM9982049
- License
- NCBI GEO policy
- Published
- Aug 20, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB