10x Xenium
Human unknown
GSM9982051
silver Interactive viewer neuroblastoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 61117, 39822), (1, 30558, 19911), (1, 15279, 9955), (1, 7639, 4977), (1, 3819, 2488)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (60474, 39069), (30237, 19534), (15118, 9767), (7559, 4883), (3779, 2441)
│ └── 'nucleus_labels': DataTree[yx] (60427, 38663), (30213, 19331), (15106, 9665), (7553, 4832), (3776, 2416)
├── Points
│ └── 'transcripts': DataFrame with shape: (143333351, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (709176, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (709176, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (716451, 2) (2D shapes)
└── Tables
└── 'table': AnnData (709176, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("cEWWFwq5GBwHYM6H0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("cEWWFwq5GBwHYM6H") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download cEWWFwq5GBwHYM6H0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/cEWWFwq5GBwHYM6H
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid cEWWFwq5GBwHYM6HLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- unknown
- Condition
- neuroblastoma
- Modality
- RNA
- Observations (cells)
- 709,176
- Transcripts
- 143,333,351
- Tier
- silver
- Size
- 7.0 GB
- Sample ID
- GSM9982051
- License
- NCBI GEO policy
- Published
- Aug 20, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB