10x Xenium
Leucoraja erinaceus trunk
GSM9901433
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 95159, 17127), (1, 47579, 8563), (1, 23789, 4281), (1, 11894, 2140), (1, 5947, 1070)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (93982, 15561), (46991, 7780), (23495, 3890), (11747, 1945), (5873, 972)
│ └── 'nucleus_labels': DataTree[yx] (93955, 15553), (46977, 7776), (23488, 3888), (11744, 1944), (5872, 972)
├── Points
│ └── 'transcripts': DataFrame with shape: (26266070, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (162075, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (162075, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (162510, 2) (2D shapes)
└── Tables
└── 'table': AnnData (162075, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("56WlqEikEqRf3vub0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("56WlqEikEqRf3vub") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download 56WlqEikEqRf3vub0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/56WlqEikEqRf3vub
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 56WlqEikEqRf3vubLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- leucoraja erinaceus
- Tissue
- trunk
- Modality
- RNA
- Observations (cells)
- 162,075
- Transcripts
- 26,266,070
- Tier
- silver
- Size
- 1.6 GB
- Sample ID
- GSM9901433
- License
- NCBI GEO policy
- Published
- Jul 28, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB